Selected Publications

Matthew P. Ayres

Weed, A.S., M.P. Ayres, and J.A. Hicke. 2013. Consequences of climate change for biotic disturbances in North American forests. Ecological Monographs, in press

Martinson, S. J., T. Ylioja, B. T. Sullivan, R. F. Billings, and M. P. Ayres. 2013. Alternate attractors in the population dynamics of a tree-killing bark beetle. Population Ecology 55:95-106.

Valtonen, A., F. Molleman, C.A. Chapman, J.R. Carey, M.P. Ayres, and H. Roininen. 2013. Tropical phenology: bi-annual rhythms and interannual variation in an Afrotropical butterfly assemblage. Ecography, in press.

Marini, L., M. P. Ayres, A. Battisti, and M. Faccoli. 2012. Climate affects severity and altitudinal distribution of outbreaks in an eruptive bark beetle. Climatic Change 115:327-341.

Shi, Peijan, Bo Wang, MP Ayres, Feng Gea, Ling Zhong, and Bai-Lian Li. 2012. Influence of temperature on the northern distribution limits of Scirpophaga incertulas Walker (Lepidoptera: Pyralidae) in China. Journal of Thermal Biology 37:130-137.

Garnas, JR., DR Houston, MP Ayres, and C. Evans. 2011. Disease ontogeny overshadows effects of climate and species interactions on population dynamics in a nonnative forest disease complex. Ecography 34: 1-10.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Garnas, JR., MP Ayres, AM Liebhold, and C Evans. 2011. Subcontinental impacts of an invasive tree disease on forest structure and dynamics. Journal of Ecology 99: 532-541.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Valtonen, A, MP Ayres, H Roininen, J Pöyry and R Leinonen. 2011. Environmental controls on the phenology of moths - predicting plasticity and constraint under climate change. Oecologia 165: 237-248.

Seppälä, R., A. Buck, and P. Katila. (eds.). 2009. Adaptation of Forests and People to Climate Change: A Global Assessment Report. International Union of Forest Research Organizations, Helsinki. IUFRO World Series Volume 22. 224 p.

Lombardero, M.J., P. Vázquez-Mejuto, and M.P. Ayres. 2008. Role of plant enemies in the forestry of indigenous versus nonindigenous pines. Ecological Applications 18: 1171-1181.

Martinson, S.J., R.W. Hofstetter, and M.P.Ayres. 2007. Why does longleaf pine have low susceptibility to southern pine beetle? Canadian Journal of Forest Research 37: 1966–1977.

Friedenberg, N.A., J.A. Powell and M.P. Ayres. 2007 Synchrony's double edge: transient dynamics and the Allee effect in stage-structured populations. Ecology Letters 10: 564–573.

Tran , J.K., T. Ylioja, R. Billings, J. Régnière, and M.P. Ayres. 2007. Impact of minimum winter temperatures on the population dynamics of Dendroctonus frontalis (Coleoptera: Scolytinae)  Ecological Applications 17: 882-899.

Reynolds, L.V., M.P. Ayres, T.G. Siccama, and R.T. Holmes. 2007. Climatic effects on caterpillar fluctuations in northern hardwood forests. Canadian Journal of Forest Research 37: 481-491

Hofstetter, R.W., J.T. Cronin, K.D. Klepzig, J.C. Moser, and M.P. Ayres. 2006. Antagonisms, mutualisms and commensalisms affect outbreak dynamics of the southern pine beetle. Oecologia 147: 679-691.

Lombardero, M.J., M. P. Ayres, R. W. Hofstetter, J.C. Moser, and K.D. Klepzig. 2003. Strong indirect interactions of Tarsonemus mites (Acarina, Tarsonemidae) and Dendroctonus frontalis (Coleoptera:Scolytidae).Oikos 102: 243-252.

Lombardero, M.J., M.P. Ayres, P.L. Lorio, Jr., and J.J. Ruel. 2000. Environmental effects on constitutive and inducible resin defenses of loblolly pine.Ecology Letters 3:329-339.

Ayres, M.P., Wilkens, R.T., Ruel, J.J., M.J. Lombardero, and E. Vallery. 2000. Nitrogen budgets of phloem-feeding bark beetles with and without symbiotic fungi (Coleoptera: Scolytidae).Ecology 81:2198-2210.

Ruel, J. J., and M.P. Ayres. 1999. Jensen's inequality predicts effects of environmental variation. Trends in Ecology and Evolution 14:361-366.

Ayres, M. P., T. P. Clausen, S. F. MacLean, Jr., A. M. Redman, and P. B. Reichardt. 1997. Diversity of structure and anti-herbivore activity in condensed tannins.Ecology 78: 1696-1712.

Ayres, M.P., and J.M. Scriber. 1994. Local adaptation to regional climates in Papilio canadensis (Lepidoptera:Papilionidae).Ecological Monographs 64: 465-482.

Schamel, D., and M. P. Ayres. 1992. The "minds-on" approach: student creativity and personal involvement in the undergraduate science laboratory. Journal of College Science Teaching 21:226-229.

Ayres, M.P. and S.F. MacLean, Jr. 1987. Development of birch leaves and the growth energetics of Epirrita autumnata (Geometridae).Ecology 68:558-568.

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Edward Michael Berger

Dubrovskaya, V, E Dubrovsky and E Berger, “Inhibition of Micro-RNA Induced RNA Silencing by 2’-O-methyl Oligonucleotides in Drosophila S2 Cells;” Vitro , 41 (2005) 12-18.

Berger, E, and E Dubrovsky, “Juvenile Hormone: Molecular Actions and Interactions during Development of Drosophila ,” Vitamins and Hormones , 75 (2005) 175-215.

Dubrovsky, E, V Dubrovskaya and E Berger, “Hormonal Regulation and Functional Role of Drosophila E75A Orphan Nuclear Receptor in the Juvenile Hormone Signaling Pathway,” Developmental Biology , 268 (2004) 258-270.

Dubrovskaya, V, E Berger and E Dubrovsky, “Juvenile Hormone Regulation of the E75 Nuclear Receptor is conserved in Diptera and Lepidoptera,” Gene 340 (2004) 171-177.

Sempere, L, E Dubrovsky, N Sokol, E Berger and V Ambros, “Temporal Regulation of MicroRNAs is mediated by Hormonal Inputs and Broad-Complex Pupal-Specific Transcription Factor in Drosophila Melanogaster ,” Developmental Biology , 259 (2003) 9-18.

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Sharon E. Bickel

Subramanian, V.V. and Bickel, S.E. (2009) Heterochromatin-mediated association of achiasmate homologues declines with age when cohesion is compromised. Genetics 181:1207-1218.

Subramanian, V.V. and Bickel, S.E. (2008) Aging predisposes oocytes to meiotic nondisjunction when the cohesin subunit Smc1 is reduced. PLoS Genet. Nov;4(11):e1000263. doi: 10.1371/journal.pgen.1000263.

PageS.L., Khetani, R.S.,Lake, C.M., Nielsen, R.J., Jeffress J.K., Bickel, ^^ S.E., and Hawley, R.S. (2008) corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes . PLoS Genet 4(9): e1000194. doi: 10.1371/journal.pgen.1000194.

Gause, M., Webber, H., Misulovin, Z., Haller, G., Rollins, R.A., Eissenberg, J.C., Bickel, S.E. and Dorsett, D. (2008) Functional links between Drosophila Nipped-B and cohesin in somatic and meiotic cells. Chromosoma 17:51-66

Khetani, R. and Bickel, S.E. (2007) Regulation of cohesion and chromosome core morphogenesis during pachytene in Drosophila oocytes. Journal of Cell Science 120: 3123-3137.

Bickel, S E, “Aging (Not So) Gracefully,” Nature Genetics , 37 (2005) 1303-1304.

Webber, H., Howard, L. and Bickel S.E. (2004) The cohesion protein ORD is required for homolog bias during meiotic recombination. Journal of Cell Biology: 164:819-829.

Balicky, E.M., Young, L., Orr-Weaver, T.L. and Bickel, S.E. (2004) A proposed role for the Polycomb Group protein dRING in meiotic sister-chromatid cohesion. Chromosoma: 112:231-239.

Jeffreys, C.A, Burrage, P.S, and Bickel, S.E. (2003) A model system for increased meiotic nondisjunction in older oocytes. Current Biology 13:498-503.

Balicky, E.M., Endres, M.W. Lai, C, and Bickel, S.E. (2002) Meiotic cohesion requires accumulation of ORD on chromosomes prior to condensation. Mol. Biol. Cell 21:3890-3900.

Bickel, S.E., Orr-Weaver, T.L. and Balicky, E.M. (2002) The sister-chromatid cohesion protein ORD is required for chiasma maintenance in Drosophila oocytes. Current Biology 12:925-929.

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Douglas Thomas Bolger

Morrison, T.A., J. Yoshizaki, J.D. Nichols, D.T. Bolger. 2011. Estimating survival in photographic capture-recapture studies: overcoming misidentification error. In press, Methods in Ecology and Evolution.

Wolkovich, E.M., D. Lipson, R.A. Virginia, K. Cottingham, and D.T. Bolger. 2009. Grass invasion causes rapid increases in ecosystem carbon and nitrogen storage in a semi-arid shrubland. Global Change Biology. 16: 1351–1365.

Bolger, D.T., W.D. Newmark, T.A. Morrison and D.F. Doak. 2008. The need for integrative approaches to understand and conserve migratory ungulates. Ecology Letters, 11: 63-77.

Bolger, D.T. 2007. Spatial and temporal variation in the Argentine ant edge effect: Implications for the mechanism of edge limitation. Biological Conservation, 136:295-305.

Bolger, D T, M A Patten, and D C Bostock, “Avian Reproductive Failure in Response to an Extreme Climatic Event,” Oecologia 142:3 (January 2005) 398-406.

Lowe W.H., K.H. Nislow, and D.T. Bolger, 2004. Stage-specific and interactive effects of sedimentation and trout on a headwater stream salamander. Ecological Applications 14: 164-172.

Crooks, K., A. Suarez, and D.T. Bolger, 2004. Avian assemblages along a gradient of urbanization in a highly fragmented landscape. Biological Conservation 115: 451-462.

Patten, M.A. and D.T. Bolger. 2003. Variation in Top-down Control of Avian Reproductive Success Across a Fragmentation Gradient. Oikos 101:479-488.

Bolger, D.T. 2002. Fragmentation effects on birds in southern California: Contrast to the top-down paradigm. Studies in Avian Biology 25:141-157.

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Ryan Calsbeek

Calsbeek, R and E Marnocha, “Context Dependent Neighbour Recognition in Anolis Sagrei : The Importance of Habitat Structure to Territory Defense,” Ethology , 112 (2006) 537-543.

Calsbeek, R, J H Knouft, and T B Smith, “Variation in Scale Numbers is Consistent with Ecologically Based Natural Selection Acting within and between Lizard Species,” Evolutionary Ecology , 20 (2006) 377-394.

Sinervo, B and R Calsbeek, “The Physiological, Behavioral, and Genetical Causes and Consequences of Frequency Dependent Selection in the Wild,” Annual Review of Ecology Evolution and Systematics 37 (2006) 581-610.

Sinervo, B, R Calsbeek, T Commendant, C Both, C Adamopoulou, and J Clobert, “Genetic and Maternal Determinants of Dispersal in Color Morphs of Side-blotched Lizards,” American Naturalist , 168 (2006) 88-89.

Sinervo, B, A Chaine, J Clobert, R Calsbeek, L Hazard, L Lancaster, A MacAdam, S Alonzo, G Corrigan, and M E Hochberg, “Color Morphs and Genetic Cycles of Greenbeard Altruism and Greenbeard Mutualism,” Proceedings of the National Academy of Sciences, U.S.A. , 103 (2006) 7372-7377.

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Celia Y. Chen

Dijkstra, J.A., K.L. Buckman, D. Ward, D.W. Evans, M. Dionne, C.Y. Chen. 2013. Experimental and natural warming elevates mercury concentrations in estuarine fish. PLOS ONE  8(3)e58401.

Schartup, A.T., R.P. Mason, P.H. Balcolm, T.A. Hollweg, C.Y. Chen. 2013. Methylmercury production in pristine and anthropogenically impacted sediments. Environmental Science and Technology  2013; 47:695-700. (PMCID in process)

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Schmitt, C.V., Serrell, N.S., and Sunderland, E.M. Sources to Seafood: Mercury Pollution in the Marine Environment. Hanover, NH: Toxic Metals Superfund Research Program, Dartmouth College 2012.

Driscoll, C.T., Chen, C.Y., Hammerschmidt, C.R., Mason, R.P., Gilmour, C.C., Sunderland, E.M., Greenfield, B.K., Buckman, K.L., Lamborg, C. H. 2012. Nutrient supply and mercury dynamics in marine ecosystems: A conceptual model. Environmental Research 119: 118-131.

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Serrell, N.S., and Sunderland, E.M.  2012. Marine mercury fate: From sources to seafood consumers. Environmental Research 119:1-2.

Glaholt, S.T., Chen, C.Y., Demidenko, E., Bugge, D.M., Folt, C. L., Shaw, J.R. 2012. Adaptive iterative design (AID): A novel approach for evaluating the effects of multiple stressor on aquatic organisms. Science of the Total Environment 432: 57-64. doi:10.1016/j.scitotenv.2012.05.074

Jackson, B.P., Bugge, D., Ranville, J.F., Chen, C.Y. 2012. Bioavailability toxicity, and Bioaccumulation of quantum dot nanoparticles to the amphipod Leptocheirus plumulosus. Environmental Science and Technology 46: 5550-5556.

Sunderland, E., Amirbahman, A., Burgess, N.M., Dalziel, J., Harding, G., Jones, S.H., Kamai, E., Karagas, M.R., Shi, X., Chen, C.Y. 2012. Mercury sources and fate in the Gulf of Maine. Environmental Research 119:27-41.

Brooks, R.T., Eggert, S.L., Nislow, K.H., Kolka, R.K., Chen, C.Y., Ward, D.M. 2012. Preliminary assessment of mercury accumulation in Massachusetts and Minnesota seasonal forest pools. Wetlands 32: 653-663. DOI 10.1007/s13157-012-0298-4.

Ward, D.M., Mayes, B, Sturup, S. Folt, C.L., Chen, C.Y. 2012. Assessing element-specific patterns of bioaccumulation across New England lakes. Science of the Total Environment 421-422: 230-237.

Chen, C.Y., Driscoll, C.T., Kamman, N.C. Mercury Hotspots in Freshwater Ecosystems: Drivers, Processes, and Patterns. 2012. In: Mercury in the Environment: Pattern and Process, (ed.) M. Bank, University of California Press, pp. 143-166.

Chen, C., Kamman, N., Williams, J., Bugge, D., Taylor, V., Jackson, B., Miller, E. 2012. Spatial and temporal variation in mercury bioaccumulation by zooplankton in Lake Champlain. Environmental Pollution 161: 343-349.

Miller, E.K., Chen, C., Kamman, N., Shanley, J., Chalmers, A., Jackson, B., Taylor, V., Smeltzer, E., Stangel, P., Shambaugh, A. 2011. Mercury in the pelagic food web of Lake Champlain. Ecotoxicology (in press) DOI 10.1007/s10646-011-0829-4.

Fisher, N.S. and Chen, C.Y. 2011. Interdisciplinary approaches for addressing marine contamination issues. Environmental Conservation 38: 187-198.

Williams, J.J., J. Dutton, C.Y. Chen, N.S. Fisher. 2010. Metal (As, Cd, Hg, and CH3Hg) bioaccumulation from water and food by the benthic amphipod Leptocheirus plumulosus. Environ. Toxicol. Chem. 29: 1755-1761.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2010. Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams. Environ. Sci. Techol. 44: 3245-3251.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2009. Rapid, efficient growth reduces mercury concentrations in stream-dwelling Atlantic salmon. Trans. Amer. Fish. Soc. 139:1-10. DOI: 10.1577/T09-032.1.

Chen, C.Y. 2009. China’s mercury problem: A sleeping giant? Woodrow Wilson International Center for Scholars. China Environment Series 2008/9 10:57-62.

Chen, C., Dionne, M., Mayes, B., Ward, D., Sturup, S., Jackson, B. 2009. Mercury bioavailability and bioaccumulation in estuarine food webs in the Gulf of Maine. Environ. Sci. Technol. 43: 1804-1810. DOI: 10.1021/es8017122.

Evers, D.C., Mason, R.P., Kamman, N.C., Chen, C.Y., Bogomolni, A.L., Taylor, D.L., Hammerschmidt, C.R., Jones, S.H., Burgess, N.M., Munney, K. Parson, K.C. 2008. An integrated mercury monitoring program for temperate estuarine and marine ecosystems on the North American Atlantic Coast. Ecohealth 5: 426-441. DOI: 10.1007/s10393-008-0205-x

Chen, C., Amirbahman, A., Fisher, N., Harding, G., Lamborg, C., Nacci, D., Taylor, D. 2008. Methylmercury in marine ecosystems: spatial patterns and processes of production, bioaccumulation, and biomagnification. Ecohealth 5: 399-408. DOI: 10.1007/s10393-008-0201-1.

Chen, C.Y., Serrell, N., Evers, D.C., Fleishman, B.J., Lambert, K.F., Weiss, J., Mason, R.P., Bank, M.S.  2008. Methylmercury in marine ecosystems: From sources to seafood consumers – A workshop report.  Environ. Health Perspectives 116: 1706-1712. DOI:10.1289/ehp.1121.

Chen, C.Y., Hathaway, K.M., Thompson, D.G., Folt, C.L. 2008. Multiple stressor effects of Release, pH, and food on the zooplankton, Simocephalus vetulus and larval amphibian, Rana pipiens. Ecotoxicol. and Environ. Safety 71: 209-218.

Chen, C.Y., Pickhardt, P.C., Xu, M.Q., Folt, C.L. 2008.  Mercury and arsenic bioaccumulation and eutrophication in Baiyandian Lake, China. Water, Air, Soil Poll. DOI 10.1007/s11270-007-9585-8.

Karimi, R., Chen C.Y., Fisher N.S., Pickhardt P.C., Folt C.L. 2007. Stoichiometric controls of mercury dilution by growth. Proceedings of the National Academy of Sciences 104:7477-7482.

Evers, D.C., Han, Y.J., Driscoll, C.T., Kamman, N.C., Goodale, M.W., Lambert, K.F., Holsen, T.M., Chen, C.Y., Clair, T.A., Butler, T. 2007. Identification and evaluation of biological hotspots of mercury in the Northeastern U.S. and Eastern Canada. Bioscience 57:29-43.

Driscoll, C.T., Han, Y.J., Chen, C.Y., Evers, D.C., Lambert, K.F., Holsen, T., Kamman, N.C., Munson, R. 2007. Mercury contamination in remote forest and aquatic ecosystems in the Northeastern U.S.: sources, transformations and management options. Bioscience 57:17-28.

Chen, C.Y., Stemberger, R.S., Kamman, N.C., Mayes, B.,M.,  Folt, C.L. 2005. Patterns of Hg bioaccumulation and transfer in aquatic food webs across multi-lake studies in the Northeast US. Ecotoxicology 14:135-147.

Chen, C.Y., Folt, C.L. 2005. High plankton biomass reduces mercury biomagnification. Environ. Sci. Technol. 39: 115-121.

Pickhardt, P.C., Folt, C.L., Chen, C.Y., Klaue, B. and Blum, J.D.  2002.  Algal blooms reduce the uptake of methylmercury in freshwater food webs.  Proceedings of the National Academy of Sciences 99: 4419-4423.

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Kathryn L. Cottingham

O’Donnell+, D.R., S.B. Fey#, and K.L. Cottingham. 2013. Nutrient availability influences kairomone-induced defenses in Scenedesmus acutus (Chlorophyceae). Journal of Plankton Research 35(1):191-200.

Fey#, S.B. and K.L. Cottingham. 2012. Thermal sensitivity predicts the establishment success of non-native species in a mesocosm warming experiment. Ecology 93(11):2313–2320.

Carey#, C.C., H.A. Ewing, K.L. Cottingham, K.C. Weathers, R.Q. Thomas#, and J.F. Haney. 2012. Occurrence, toxicity, and potential ecological consequences of the cyanobacterium Gloeotrichia echinulata for low-nutrient lakes in the northeastern United States. Aquatic Ecology 46(4) 395-409.

Davis#, M.A., T.A. MacKenzie, K.L. Cottingham, D. Gilbert-Diamond, T. Punshon, and M.R. Karagas. 2012. Rice consumption and urinary arsenic concentrations in U.S. children. Environmental Health Perspectives 120(10):1418-24.

Gruber+, J.F., M.R. Karagas, D. Gilbert-Diamond, P. Bagley, M.S. Zens, V. Sayarath, T. Punshon, J.S. Morris, and K.L. Cottingham*.  2012. Associations between toenail arsenic accumulation and dietary factors in a New Hampshire population. Nutrition Journal 11:45. (* = corresponding author)

Jackson, B P, V F Taylor, M R Karagas, T Punshon and K L Cottingham. 2012. Arsenic, organic foods, and brown rice syrup. Environmental Health Perspectives 120(5):623-626.

Jackson, B.P., T. Punshon, V.F. Taylor, and K.L. Cottingham. 2012. Arsenic concentration and speciation in infant formulas and first foods. Pure and Applied Chemistry 84(2): 215–223.

Gilbert-Diamond*, D, K L Cottingham*, J F Gruber, T Punshon, V Sayarath, A J Gandolfi, E R Baker, B Jackson, and M R Karagas. 2011. Arsenic exposure from rice consumption raises a health concern. Proceedings of the National Academy of Sciences 108:20656-20660. (* = co-first authors)

Adler, P B, and 57 co-authors. 2011. Productivity is a poor predictor of plant species richness. Science 333:1750-1753.

Fey, S B and K L Cottingham. 2011. Linking biotic interactions and climate change to the success of exotic Daphnia lumholtzi . Freshwater Biology 56:2196-2209.

Fey, S B, Z A Mayer, S C Davis, and K L Cottingham. 2010. Zooplankton grazing of Gloeotrichia echinulata and associated life history consequences. Journal of Plankton Research 32(9):1337-1347. [Winner of the 2010 David Cushing Prize for the best paper in JPR by a lead author under age 35.]

Carey, C C, K C Weathers, and K L Cottingham. 2008. Gloeotrichia echinulata in an oligotrophic lake: helpful insights from eutrophic lakes. Journal of Plankton Research __ 30:893-904.

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Michael R. Dietrich

Outsider Scientists: Routes to Innovation in Biology. Oren Harman and Michael R. Dietrich, Editors. (Chicago, IL: University of Chicago Press, 2013).

“Molecular Evolution” in The Philosophy of Biology: A Companion for Educators. Kostas Kampourakis, Editor, (Dordrecht: Springer Verlag, 2013), 239-248.

The Educated Eye: Visual Culture and Pedagogy in the Life Sciences. Nancy Anderson and Michael R. Dietrich, Editors. (Hanover, NH: University Press of New England, 2012).

Nancy Anderson and Michael R. Dietrich, “Visual Lessons and the Life Sciences ,” The Educated Eye: Visual Culture and Pedagogy in the Life Sciences, Nancy Anderson and Michael R. Dietrich, Editors. (Hanover, NH: University Press of New England, 2012), 1-13.

Robert A. Skipper, Jr. and Michael R. Dietrich, “Sewall Wright's Adaptive Landscape: Philosophical Reflections on Heuristic Value,” inThe Adaptive Landscape in Evolutionary Biology, Erik Svensson & Ryan Calsbeek, Editors. (Oxford: Oxford University Press, 2012), 3-15.

Michael R. Dietrich and Robert A. Skipper, Jr., “A Shifting Terrain: A Brief History of the Adaptive Landscape,” in The Adaptive Landscape in Evolutionary Biology, Erik Svensson & Ryan Calsbeek, Editors. (Oxford: Oxford University Press, 2012), 16-25.

"Editorial Introduction," Journal of the History of Biology 45 (2012), 1.

Book Review, "Manfred Laubichler and Gerd B. Mueller, Editors,Modeling Biology: Structures, Behaviors, Evolution," History and Philosophy of the LIfe Sciences 34 (2012), 503-504.

“Reinventing Richard Goldschmidt: Reputation, Memory, and Biography,” Journal of the History of Biology 44(2011), 693-712.

Book Review, “Beyond The Double Helix: A Review of Robert Olby’sFrancis Crick: Hunter of Life’s Secrets,” The Mendel Newsletter 18 (2010), 22-24. http://www.amphilsoc.org/library/mendel

Book Review, “Philip Thurtle, The Emergence of Genetic Rationality,”Journal of the History of Biology 43 (2010), 621-622.

Roberta L. Millstein, Robert A. Skipper, Jr., and Michael R. Dietrich, “(Mis)interpreting Mathematical Models of Drift: Drift as a Physical Process,” Philosophy and Theory in Biology 1:e002 (2009), 1-13. http://hdl.handle.net/2027/spo.6959004.0001.002

“Microevolution and Macroevolution Are Governed by the Same Processes” in Contemporary Debates in Philosophy of Biology. Francisco J. Ayala and Robert Arp, Editors. (Blackwell Publishing, 2009), 169-179.

Kevin J. Peterson, Michael R. Dietrich, and Mark A. McPeek, “miRNAs and Metazoan Macroevolution: Insights into Canalization, Complexity, and the Cambrian Explosion,” Bioessays 31 (2009), 736-747.

Gregory K. Davis, Michael R. Dietrich, and David Jacobs, "Homeotic Mutants and the Assimilation of Developmental Genetics into the Evolutionary Synthesis," in Joe Cain and Michael Ruse, Eds.,Descended from Darwin: Insights into American Evolutionary Studies, 1900-1970 (Philadelphia: American Philosophical Society, Transactions of the American Philosophical Society, volume 99, part 1, 2009), pp. 133-154.

“The Genetic Basis of Evolutionary Change,” Evolution: The First Four Billion Years. Michael Ruse and Joe Travis, Eds., (Cambridge, MA: Harvard University Press, 2009), pp. 602-603.

Book Review, "The Rise of the Classical Gene: Review of James Schwartz’ In Pursuit of the Gene,” Evolution and Development 11 (2009), 326-327.

Book Review, “Frederick Grinnell, Everyday Practice of Science: Where Intuition and passion Meet Objectivity and Logic,” The Quarterly Review of Biology 84 (2009), 278.

Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich,Editors. (New Haven, CT: Yale University Press, 2008).

Oren Harman and Michael R. Dietrich, “On Rebels, Icons, and the Value of Dissent” in Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich, Editors. (New Haven, CT: Yale University Press, 2008), pp. 1-19.

“Striking the Hornet’s Nest: Richard Goldschmidt’s Rejection of the Particulate Gene” in Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich, Editors. (New Haven, CT: Yale University Press, 2008), pp. 119-136.

Oren Harman and Michael R. Dietrich, “Dynamic Dissent: Iconoclasts, both visionary and misguided, have advanced modern biology,“ The Chronicle Review 54 (July 11, 2008), B7-8.

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Patrick Dolph

Roles of the Drosophila SK channel (dSK) in courtship memory. Abou Tayoun AN, Pikielny C, Dolph PJ. PLoS One. 2012;7(4):e34665. doi: 10.1371/journal.pone.0034665. Epub 2012 Apr 11. PMID: 22509342 [PubMed - indexed for MEDLINE]

Cathepsin proteases mediate photoreceptor cell degeneration in Drosophila. Kinser RD, Dolph PJ. Neurobiol Dis. 2012 Jun;46(3):655-62. doi: 10.1016/j.nbd.2012.03.004. Epub 2012 Mar 9. PMID: 22426392[Pu bMed - indexed for MEDLINE]

Gavin, B A, M J Dolph, N R Deleault, J C Geoghegan, V Khurana, M B Feany, P J Dolph, and S Supattapone, “Accelerated Accumulation of Misfolded Prion Protein and Spongiform Degeneration in a Drosophila Model of Gerstmann-Sträussler-Scheinker Syndrome,” The Journal of Neuroscience , 26:48 (November 2006) 12408-12414.

Alternative pathway of cell death in Drosophila mediated by NF-κB transcription factor Relish. Chinchore Y, Gerber GF, Dolph PJ. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E605-12. doi: 10.1073/pnas.1110666109. Epub 2012 Feb 10. PMID: 22328149 [PubMed - indexed for MEDLINE]

Characterization of two dominant alleles of the major rhodopsin-encoding gene ninaE in Drosophila. Mitra A, Chinchore Y, Kinser R, Dolph PJ. Mol Vis. 2011;17:3224-33. Epub 2011 Dec 14. PMID: 22194648 [PubMed - indexed for MEDLINE]

The Drosophila SK channel (dSK) contributes to photoreceptor performance by mediating sensitivity control at the first visual network. Abou Tayoun AN, Li X, Chu B, Hardie RC, Juusola M, Dolph PJ. J Neurosci. 2011 Sep 28;31(39):13897-910. doi: 10.1523/JNEUROSCI.3134-11.2011. PMID: 21957252 [PubMed - indexed for MEDLINE]

Cell-autonomous requirement for DNaseII in nonapoptotic cell death. Bass BP, Tanner EA, Mateos San Martín D, Blute T, Kinser RD, Dolph PJ, McCall K. Cell Death Differ. 2009 Oct;16(10):1362-71. doi: 10.1038/cdd.2009.79. Epub 2009 Jun 26. PMID: 19557011 [PubMed - indexed for MEDLINE]

Accumulation of rhodopsin in late endosomes triggers photoreceptor cell degeneration. Chinchore Y, Mitra A, Dolph PJ. PLoS Genet. 2009 Feb;5(2):e1000377. doi: 10.1371/journal.pgen.1000377. Epub 2009 Feb 13. PMID: 19214218 [PubMed - indexed for MEDLINE]

 

The role of carcinine in signaling at the Drosophila photoreceptor synapse. Gavin BA, Arruda SE, Dolph PJ. PLoS Genet. 2007 Dec;3(12):e206. PMID: 18069895 [PubMed - indexed for MEDLINE]

 

Accelerated accumulation of misfolded prion protein and spongiform degeneration in a Drosophila model of Gerstmann-Sträussler-Scheinker syndrome. Gavin BA, Dolph MJ, Deleault NR, Geoghegan JC, Khurana V, Feany MB, Dolph PJ, Supattapone S. J Neurosci. 2006 Nov 29;26(48):12408-14. PMID: 17135402 [PubMed - indexed for MEDLINE]

An essential role for endocytosis of rhodopsin through interaction of visual arrestin with the AP-2 adaptor. Orem NR, Xia L, Dolph PJ. J Cell Sci. 2006 Aug 1;119(Pt 15):3141-8. Epub 2006 Jul 11. PMID: 16835270 [PubMed - indexed for MEDLINE]

Molecular cloning of the pawn locus from Drosophila melanogaster. Arruda SE, Dolph PJ. Gene. 2003 May 22;310:169-73. PMID: 12801644 [PubMed - indexed for MEDLINE]

 

Post-transcriptional suppression of pathogenic prion protein expression in Drosophila neurons. Deleault NR, Dolph PJ, Feany MB, Cook ME, Nishina K, Harris DA, Supattapone S. J Neurochem. 2003 Jun;85(6):1614-23. PMID: 12787080

Epitope masking of rhabdomeric rhodopsin during endocytosis-induced retinal degeneration. Orem NR, Dolph PJ. Mol Vis. 2002 Dec 2;8:455-61. PMID: 12486400

Arrestin: roles in the life and death of retinal neurons. Dolph PJ. Neuroscientist. 2002 Aug;8(4):347-55. Review. PMID: 12194503

Orem, N R, and P J Dolph, “Loss of the Phospholipase C Gene Product Induces Massive Endocytosis of Rhodopsin and Arrestin in Drosophila Photoreceptors,” Vision Research , 42:4 (February 2002) 497-505.

The formation of stable rhodopsin-arrestin complexes induces apoptosis and photoreceptor cell degeneration. Alloway PG, Howard L, Dolph PJ. Neuron. 2000 Oct;28(1):129-38. PMID: 11086989

A role for the light-dependent phosphorylation of visual arrestin. Alloway PG, Dolph PJ. Proc Natl Acad Sci U S A. 1999 May 25;96(11):6072-7. PMID: 10339543

An eye-specific G beta subunit essential for termination of the phototransduction cascade. Dolph PJ, Man-Son-Hing H, Yarfitz S, Colley NJ, Deer JR, Spencer M, Hurley JB, Zuker CS. Nature. 1994 Jul 7;370(6484):59-61. PMID: 8015606

Arrestin function in inactivation of G protein-coupled receptor rhodopsin in vivo. Dolph PJ, Ranganathan R, Colley NJ, Hardy RW, Socolich M, Zuker CS. Science. 1993 Jun 25;260(5116):1910-6. PMID: 8316831

olation of a novel visual-system-specific arrestin: an in vivo substrate for light-dependent phosphorylation. LeVine H 3rd, Smith DP, Whitney M, Malicki DM, Dolph PJ, Smith GF, Burkhart W, Zuker CS. Mech Dev. 1990 Dec;33(1):19-25. PMID: 2129011

Translation by the adenovirus tripartite leader: elements which determine independence from cap-binding protein complex. Dolph PJ, Huang JT, Schneider RJ. J Virol. 1990 Jun;64(6):2669-77. Erratum in: J Virol 1990 Aug;64(8):4042. PMID: 1692346

 

Secondary structure analysis of adenovirus tripartite leader. Zhang Y, Dolph PJ, Schneider RJ. J Biol Chem. 1989 Jun 25;264(18):10679-84. PMID: 2732243

The adenovirus tripartite leader may eliminate the requirement for cap-binding protein complex during translation initiation. Dolph PJ, Racaniello V, Villamarin A, Palladino F, Schneider RJ. J Virol. 1988 Jun;62(6):2059-66. PMID: 2835510

Characterization of a gene cluster for exopolysaccharide biosynthesis and virulence in Erwinia stewartii. Dolph PJ, Majerczak DR, Coplin DL. J Bacteriol. 1988 Feb;170(2):865-71. PMID: 2828330

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Nathaniel J. Dominy

Kraft TS, Venkataraman VV, Dominy NJ (2014). A natural history of human tree climbing. Journal of Human Evolution (in press). doi: 10.1016/j.jhevol.2014.02.002

Patin E, Siddle K, Laval G, Quach H, Harmant C, Becker N, Froment A, Régnault B, Lemée L, Gravel S, Hombert J-M, Van der Veen L, Dominy NJ, Perry GH, Barreiro LB, Verdu P, Heyer E, Quintana-Murci L (2014). The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nature Communications 5:3163.

Yeakel JD, Dominy NJ, Koch PL, Mangel M (2014). Stable isotopes, functional morphology, and human evolution: A model of consilience. Evolution 68:190-203.

Moritz GL, Lim NT-L, Neitz M, Peichl L, Dominy NJ (2013). Expression and evolution of short wavelength sensitive opsins in colugos: A nocturnal lineage that informs debate on primate origins. Evolutionary Biology 40:542-553.

Melin AD, Matsushita Y, Moritz GL, Dominy NJ, Kawamura S (2013). Inferred L/M cone opsin polymorphism of ancestral tarsiers sheds dim light on the origin of anthropoid primates. Proceedings of the Royal Society B 280:20130189.

Bernstein RM, Dominy NJ (2013). Mount Pinatubo, inflammatory cytokines, and the immunological ecology of Aeta hunter-gatherers. Human Biology 85:231-250.

Venkataraman VV, Kraft TS, DeSilva JM, Dominy NJ (2013). Phenotypic plasticity of climbing-related traits in the ankle joint of great apes and rainforest hunter-gatherers. Human Biology 85:309-328.

Venkataraman VV, Kraft TS, Dominy NJ (2013). Tree climbing and human evolution. Proceedings of the National Academy of Sciences USA 110:1237-1242.

Dominy NJ (2012). Hominins living on the sedge. Proceedings of the National Academy of Sciences USA 109:20171-20172.

Moore BA, Kamilar JM, Collin SP, Bininda-Emonds ORP, Dominy NJ, Hall MI, Heesy CP, Johnsen S, Lisney TJ, Loew ER, Moritz G, Nava SS, Warrant E, Yopak KE, Fernández-Juricic E (2012). A novel method for comparative analysis of retinal specialization traits from topographic maps. Journal of Vision 12:13, 1-24.

Villanea FA, Perry GH, Gutiérrez-Espeleta G, Dominy NJ (2012). ASPM and the evolution of cerebral cortical size in a community of New World monkeys. PLoS ONE 7:e44928.

Ramsier MA, Dominy NJ (2012). Receiver bias and the acoustic ecology of aye-ayes (Daubentonia madagascariensis). Communicative and Integrative Biology 5:6, 1-4.

Moritz GL, Fourie N, Yeakel JD, Phillips-Conroy JE, Jolly CJ, Koch PL, Dominy NJ (2012). Baboons, water, and the ecology of oxygen stable isotopes in an arid hybrid zone. Physiological and Biochemical Zoology 85:421-430.

Crowley BE, Godfrey LR, Guilderson TP, Zermeño P, Koch PL, Dominy NJ (2012) Extinction and ecological retreat in a community of primates. Proceedings of the Royal Society of London B 279:3597-3605.

Ramsier MA, Cunningham AJ, Moritz GL, Finneran JJ, Williams CV, Ong PS, Gursky-Doyen SL, Dominy NJ (2012). Primate communication in the pure ultrasound. Biology Letters 8:508-511.

Ramsier MA, Cunningham AJ, Finneran JJ, Dominy NJ (2012). Social drive and the evolution of primate hearing. Philosophical Transactions of the Royal Society B 367:1860-1868

Vogel ER, Knott CD, Crowley BE, Blakely MD, Dominy NJ (2012). Bornean orangutans on the brink of protein bankruptcy. Biology Letters 8:333-336.

Melin AD, Moritz GL, Fosbury RAE, Kawamura S, Dominy NJ (2012). Why aye-ayes see blue. American Journal of Primatology 74:185-192.

Moritz GL, Dominy NJ (2012). Thermal imaging of aye-ayes (Daubentonia madagascariensis) reveals a dynamic vascular supply during haptic sensation. International Journal of Primatology 33:588-597.

Vogel ER, Crowley BE, Knott CD, Blakely MD, Larsen MD, Dominy NJ (2012). A noninvasive method for estimating nitrogen balance in free-ranging primates. International Journal of Primatology 33:567-587.

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Carol L. Folt

Ward, D M, K H Nislow, and C L Folt, Increased Population Density and Suppressed Prey Biomass: Relative Impacts on Juvenile Atlantic Salmon Growth, Transactions of the American Fisheries Society , 138:1 (2009) 135-143.

Chen, C Y, P C Pickhardt, M Q Xum, and C L Folt, “Mercury and Arsenic Bioaccumulation and Eutrophication in Baiyangdian Lake,” Water, AirandSoil Pollution , 190:1-4 (2008) 115-127.

Kennedy B P, K H Nislow, and C L Folt, “Linking Consumption Rates to Habitat, Growth and Survival of Juvenile Atlantic Salmon,” Ecology , 89:9 (2008) 2529-2541.

Ward, D M, K H Nislow, and C L Folt, “Do Native Species Limit Survival of Reintroduced Altantic Salmon in Historic Rearing Streams?” Biological Conservation , 141:1 (2008) 146-152.

Karimi, R, C Y Chen, N S Fisher, P C Pickhardt, and C L Folt, “Stoichiometric Controls of Mercury Dilution by Growth,” Proceedings of the National Academy of Sciences 104:18 (2007) 7477-7482.

Shaw, J R, J K Colbourne, J C Davey, S P Glaholt, T H Hampton, C Y Chen, C L Folt, and J W Hamilton, “Gene Response Profiles for Daphnia pulex Exposed to the Environmental Stressor Cadmium Reveals Novel Crustacean Metallothioneins,” BMC Genomics , 8:477 (2007).

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Andrew J. Friedland

Friedland, A.J., R. Relyea, and D. Courard-Hauri. Essentials of Environmental Science . New York: W.H. Freeman. 2012. 403 pages.

Stankwitz, C., J.M. Kaste and A.J. Friedland. 2012. Threshold increases in lead and mercury from tropospheric deposition across an elevational gradient. Environmental Science and Technology . dx.doi.org/10.1021/es204208w.

Zummo, L.M. and A.J. Friedland. 2011. Soil carbon release along a gradient of physical disturbance in a harvested northern hardwood forest. Forest Ecology and Management 261:1016-1026.

Kaste, J.M., B.C. Bostick, A.M. Heimsath, E. Steinnes, and A.J. Friedland. 2011. The dynamics of Al, Fe and Mn in aging organic matter: Insights from the dating of soil layers. Geochimica et Cosmochimica Acta 75:1642-1661.

Friedland, A.J. and K.T. Gillingham. 2010. Carbon accounting a tricky business (letter). Science 327:410-411.

Friedland, A.J., C.L. Folt, Writing Successful Science Proposals , Second Edition (2009).

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John J. Gilbert

Gilbert, J.J. and M.A. McPeek. In press. Maternal age and spine development in a rotifer: ecological implications and evolution. Ecology.

Gilbert, J.J. 2013. The cost of predator-induced morphological defense in rotifers: experimental studies and synthesis. J. Plankton Res. 35: 461-472. 

Gilbert, J.J. 2012. Predator-induced defense in rotifers: developmental lags for morph transformations, and effect on population growth. Aquatic Ecol. 46: 475-486.

Gilbert, J.J. 2012. Effects of an ostracod (Cypris pubera) on the rotifer Keratella tropica: predation and reduced spine development. Internat. Rev. Hydrobiol. 97: 445-453.

Gilbert, J.J. 2011. Temperature, kairomones, and phenotypic plasticity in the rotifer Keratella tropica (Apstein, 1907). Hydrobiologia 678: 179-190.

Gilbert, J.J. 2011. Induction of different defenses by two enemies in the rotifer Keratella tropica: response priority and sensitivity to enemy density. Freshwat. Biol. 56: 926-938.

Gilbert, J.J. 2010. Effect of food concentration on the production and viability of resting eggs of the rotifer Brachionus: implications for the timing of sexual reproduction. Freshwat. Biol. 55: 2437-2446

Gilbert, J.J. and M.C. Diéguez. 2010. Low crowding threshold for induction of sexual reproduction and diapause in a Patagonian rotifer. Freshwat. Biol. 55: 1705-1718.

Gilbert, J.J. 2009. Predator-specific inducible defenses in the rotifer Keratella tropica. Freshwat. Biol. 54: 1933-1946.

Schröder, T and J.J. Gilbert. 2009. Maternal age and spine development in the rotifer Brachionus calyciflorus: increase of spine length with birth order. Freshwat. Biol. 54: 1054-1065.

Gilbert, J.J. 2007. Timing of diapause in monogonont rotifers. In: Diapause in aquatic invertebrates: theory and human use (V. Alekseev, J. J. Gilbert and B. De Stasio, eds.). Springer, Dordrecht, The Netherlands. pp. 11-27.

Gilbert, J.J. 2007. Induction of mictic females in the rotifer Brachionus: oocytes of amictic females respond individually to population-density signal only during oogenesis shortly before oviposition. Freshwat. Biol. 52: 1417-1426.

Gilbert, J.J. and E.J. Walsh. 2005. Brachionus calyciflorus is a species complex: mating behavior and genetic differentiation among four geographically isolated strains. Hydrobiologia 546: 257-265.

Gilbert, J. J. and T. Schröder. 2004. Rotifers from diapausing, fertilized eggs: unique features and emergence. Limnol. Oceanogr. 49: 1341-1354.

Gilbert, J.J. 2004. Females from resting eggs and parthenogenetic eggs in the rotifer Brachionus calyciflorus: lipid droplets, starvation resistance and reproduction. Freshwat. Biol. 49: 1505-1515.

Schröder, T. and J.J. Gilbert. 2004. Transgenerational plasticity for sexual reproduction and diapause in the life cycle of monogonont rotifers: intraclonal, intraspecific and interspecific variation in the response to crowding. Functional Ecology 18: 458-466.

Gilbert, J.J. 2003. Environmental and endogenous control of sexuality in a rotifer life cycle: developmental and population biology. Evolution & Development 5: 19-24.

Diéguez, M.C. and J.J. Gilbert. 2003. Predation by Buenoa macrotibialis (Insecta, Hemiptera) on zooplankton: effect of light on selection and consumption of prey. J. Plankton Res. 25: 759-769.

Gilbert, J.J. and T. Schröder. 2003. The ciliate epibiont Epistylis pygmaeum: selection for zooplankton hosts, reproduction and effect on two rotifer hosts. Freshwat. Biol. 48: 878-893.

Gilbert, J.J. 2003. Specificity of crowding response that induces sexuality in the rotifer Brachionus. Limnol. Oceanogr. 48: 1297-1303.

Gilbert, J.J. 2002. Endogenous regulation of environmentally-induced sexuality in a rotifer: a multi-generational parental effect induced by fertilization. Freshwat. Biol. 47: 1633-1641.

Diéguez, M.C. and J.J. Gilbert. 2002. Suppression of the rotifer Polyarthra remata by the omnivorous copepod Tropocyclops extensus: predation or competition. J. Plankton Res. 24: 359-369.

Gilbert, J.J. 1999. Kairomone-induced morphological defenses in rotifers. In: The ecology and evolution of inducible defenses (R. Tollrian and C.D. Harvell, eds.). Princeton University Press. pp. 127-141.

Gilbert, J.J. 1988. Suppression of rotifer populations by Daphnia: a review of the evidence, the mechanisms, and the effects on zooplankton community structure. Limnol. Oceanogr. 33: 1286-1303.

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Amy S. Gladfelter

Meseroll RA, Occhipinti P, Gladfelter AS. Septin phosphorylation and coiled-coil domains function in cell and septin ring morphology in the filamentous fungus ashbya gossypii. Eukaryot Cell. 2013 Feb;12(2):182-93. doi: 10.1128/EC.00251-12. Epub 2012 Nov 30. PubMed PMID: 23204191; PubMed Central PMCID: PMC3571309.

Meseroll RA, Howard L, Gladfelter AS. Septin ring size scaling and dynamics require the coiled-coil region of Shs1p. Mol Biol Cell. 2012 Sep;23(17):3391-406. doi: 10.1091/mbc.E12-03-0207. Epub 2012 Jul 5. PubMed PMID: 22767579; PubMed Central PMCID: PMC3431940.

Gerstenberger JP, Occhipinti P, Gladfelter AS. Heterogeneity in mitochondrial morphology and membrane potential is independent of the nuclear division cycle in multinucleate fungal cells. Eukaryot Cell. 2012 Mar;11(3):353-67. doi: 10.1128/EC.05257-11. Epub 2012 Jan 20. PubMed PMID: 22267774; PubMed Central PMCID: PMC3294448.

Anker JF, Gladfelter AS. Axl2 integrates polarity establishment, maintenance, and environmental stress response in the filamentous fungus Ashbya gossypii. Eukaryot Cell. 2011 Dec;10(12):1679-93. doi: 10.1128/EC.05183-11. Epub 2011 Oct 7. PubMed PMID: 21984708; PubMed Central PMCID: PMC3232731.

Spiliotis ET, Gladfelter AS. Spatial guidance of cell asymmetry: septin GTPases show the way. Traffic. 2012 Feb;13(2):195-203. doi: 10.1111/j.1600-0854.2011.01268.x. Epub 2011 Sep 19. Review. PubMed PMID: 21883761; PubMed Central PMCID: PMC3245886.

DeMay BS, Noda N, Gladfelter AS, Oldenbourg R. Rapid and quantitative imaging of excitation polarized fluorescence reveals ordered septin dynamics in live yeast. Biophys J. 2011 Aug 17;101(4):985-94. doi: 10.1016/j.bpj.2011.07.008. PubMed PMID: 21843491; PubMed Central PMCID: PMC3175061.

DeMay BS, Bai X, Howard L, Occhipinti P, Meseroll RA, Spiliotis ET, Oldenbourg R, Gladfelter AS. Septin filaments exhibit a dynamic, paired organization that is conserved from yeast to mammals. J Cell Biol. 2011 Jun 13;193(6):1065-81. doi: 10.1083/jcb.201012143. PubMed PMID: 21670216; PubMed Central PMCID: PMC3115802.

Gladfelter AS. Guides to the final frontier of the cytoskeleton: septins in filamentous fungi. Curr Opin Microbiol. 2010 Dec;13(6):720-6. doi: 10.1016/j.mib.2010.09.012. Epub 2010 Oct 9. Review. PubMed PMID: 20934902.

Nair DR, D'Ausilio CA, Occhipinti P, Borsuk ME, Gladfelter AS. A conserved G₁ regulatory circuit promotes asynchronous behavior of nuclei sharing a common cytoplasm. Cell Cycle. 2010 Sep 15;9(18):3771-9. doi: 10.4161/cc.9.18.12999. Epub 2010 Sep 13. PubMed PMID: 20930528; PubMed Central PMCID: PMC3047801.

Chen CH, DeMay BS, Gladfelter AS, Dunlap JC, Loros JJ. Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16715-20. doi: 10.1073/pnas.1011190107. Epub 2010 Aug 23. PubMed PMID: 20733070; PubMed Central PMCID: PMC2944764.

DeMay BS, Meseroll RA, Occhipinti P, Gladfelter AS. Cellular requirements for the small molecule forchlorfenuron to stabilize the septin cytoskeleton. Cytoskeleton (Hoboken). 2010 Jun;67(6):383-99. doi: 10.1002/cm.20452. PubMed PMID: 20517926.

DeMay BS, Meseroll RA, Occhipinti P, Gladfelter AS. Regulation of distinct septin rings in a single cell by Elm1p and Gin4p kinases. Mol Biol Cell. 2009 Apr;20(8):2311-26. doi: 10.1091/mbc.E08-12-1169. Epub 2009 Feb 18. PubMed PMID: 19225152; PubMed Central PMCID: PMC2669037.

Gladfelter AS, Montagna C. Seeking truth on Monte Verita. Workshop on the molecular biology and biochemistry of septins and septin function. EMBO Rep. 2007 Dec;8(12):1120-6. Epub 2007 Nov 2. PubMed PMID: 17975554; PubMed Central PMCID: PMC2267226.

Sudbery PE, Gladfelter AS. Pathocycles. Fungal Genet Biol. 2008 Jan;45(1):1-5. Epub 2007 Feb 28. PubMed PMID: 17964832.

Gladfelter AS, Sustreanu N, Hungerbuehler AK, Voegeli S, Galati V, Philippsen P. The anaphase-promoting complex/cyclosome is required for anaphase progression in multinucleated Ashbya gossypii cells. Eukaryot Cell. 2007 Feb;6(2):182-97. Epub 2006 Dec 8. PubMed PMID: 17158735; PubMed Central PMCID: PMC1797942.

Hungerbuehler AK, Philippsen P, Gladfelter AS. Limited functional redundancy and oscillation of cyclins in multinucleated Ashbya gossypii fungal cells. Eukaryot Cell. 2007 Mar;6(3):473-86. Epub 2006 Nov 22. PubMed PMID: 17122387; PubMed Central PMCID: PMC1828934.

Gladfelter AS. Nuclear anarchy: asynchronous mitosis in multinucleated fungal hyphae. Curr Opin Microbiol. 2006 Dec;9(6):547-52. Epub 2006 Oct 11. Review. PubMed PMID: 17045513.

Helfer H, Gladfelter AS. AgSwe1p regulates mitosis in response to morphogenesis and nutrients in multinucleated Ashbya gossypii cells. Mol Biol Cell. 2006 Oct;17(10):4494-512. Epub 2006 Aug 9. PubMed PMID: 16899511; PubMed Central PMCID: PMC1635347.

Gladfelter AS, Hungerbuehler AK, Philippsen P. Asynchronous nuclear division cycles in multinucleated cells. J Cell Biol. 2006 Jan 30;172(3):347-62. PubMed PMID: 16449188; PubMed Central PMCID: PMC2063645.

Gladfelter AS. Control of filamentous fungal cell shape by septins and formins. Nat Rev Microbiol. 2006 Mar;4(3):223-9. Review. Erratum in: Nat Rev Microbiol. 2006 Apr;4(4):318. PubMed PMID: 16429163.

Gladfelter AS, Kozubowski L, Zyla TR, Lew DJ. Interplay between septin organization, cell cycle and cell shape in yeast. J Cell Sci. 2005 Apr 15;118(Pt 8):1617-28. Epub 2005 Mar 22. PubMed PMID: 15784684.

Gladfelter AS, Zyla TR, Lew DJ. Genetic interactions among regulators of septin organization. Eukaryot Cell. 2004 Aug;3(4):847-54. PubMed PMID: 15302817; PubMed Central PMCID: PMC500892.

Irazoqui JE, Gladfelter AS, Lew DJ. Cdc42p, GTP hydrolysis, and the cell's sense of direction. Cell Cycle. 2004 Jul;3(7):861-4. Epub 2004 Jul 26. Review. PubMed PMID: 15190213.

Irazoqui JE, Gladfelter AS, Lew DJ. Scaffold-mediated symmetry breaking by Cdc42p. Nat Cell Biol. 2003 Dec;5(12):1062-70. Epub 2003 Nov 16. PubMed PMID: 14625559.

Gladfelter AS, Bose I, Zyla TR, Bardes ES, Lew DJ. Septin ring assembly involves cycles of GTP loading and hydrolysis by Cdc42p. J Cell Biol. 2002 Jan 21;156(2):315-26. Epub 2002 Jan 21. PubMed PMID: 11807094; PubMed Central PMCID: PMC2199227.

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William R. Green

Green KA, Cook WJ, Green WR Myeloid-derived suppressor cells in murine retrovirus-induced AIDS inhibit T- and B-cell responses in vitro that are used to define the immunodeficiency. J Virol 2013 Feb; 87(4):2058-71 PMID: 23221564

Li W, Green WR Immunotherapy of murine retrovirus-induced acquired immunodeficiency by CD4 T regulatory cell depletion and PD-1 blockade. J Virol 2011 Dec; 85(24):13342-53 PMID: 21917983

Li W, Carlson TL, Green WR Stimulation-dependent induction of CD154 on a subset of CD4+ FoxP3+ T-regulatory cells. Int Immunopharmacol 2011 Sep; 11(9):1205-10 PMID: 21496498

Rutkowski MR, Stevens CA, Green WR Impaired memory CD8 T cell responses against an immunodominant retroviral cryptic epitope. Virology 2011 Apr 10; 412(2):256-68 PMID: 21295815

Carlson TL, Green KA, Green WR Alternative translational reading frames as a novel source of epitopes for an expanded CD8 T-cell repertoire: use of a retroviral system to assess the translational requirements for CTL recognition and lysis. Viral Immunol 2010 Dec; 23(6):577-83 PMID: 21142443

Rutkowski MR, Ho O, Green WR Defining the mechanism(s) of protection by cytolytic CD8 T cells against a cryptic epitope derived from a retroviral alternative reading frame. Virology 2009 Aug 1; 390(2):228-38 PMID: 19539970

Green KA, Okazaki T, Honjo T, Cook WJ, Green WR The programmed death-1 and interleukin-10 pathways play a down-modulatory role in LP-BM5 retrovirus-induced murine immunodeficiency syndrome. J Virol 2008 Mar; 82(5):2456-69 PMID: 18094175

Ho O, Green WR Alternative translational products and cryptic T cell epitopes: expecting the unexpected. J Immunol 2006 Dec 15; 177(12):8283-9 PMID: 17142722

Li W, Green WR Murine AIDS requires CD154/CD40L expression by the CD4 T cells that mediate retrovirus-induced disease: Is CD4 T cell receptor ligation needed? Virology 2007 Mar 30; 360(1):58-71 PMID: 17113120

Rich RF, Green WR Apoptosis of epitope-specific antiretroviral cytotoxic T lymphocytes via Fas ligand-Fas interactions. Viral Immunol 2006 Summer; 19(3):424-33 PMID: 16987061

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Erik Griffin

Griffin EE, Odde DJ, Seydoux G (2011) Regulation of the MEX-5 gradient by a spatially separated kinase/phosphatase cycle. Cell , Vol 146: 955-968.

Motegi F, Zonies S, Hao Y, Cuenca AA, Griffin EE, Seydoux G (2011)  Microtubules induce self-organization of polarized PAR domains in Caenorhabditis elegans zygotes. Nature Cell Biology, Published online October 9, 2011.

Griffin EE, Chan DC (2006) Domain interactions within Fzo1 oligomers are essential for mitochondrial fusion.  Journal of Biological Chemistry, 281: 16599-16606.

Griffin EE, Detmer SA, Chan DC (2006) Molecular mechanism of mitochondrial fusion.  Biochimica et Biophysica Acta - Molecular Cell Reviews, 1763:482-489.

Griffin EE, Graumann J, Chan DC (2005) The WD40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondria.  Journal of Cell Biology, 170: 237-248.

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Gevorg Grigoryan

"Absolute Free Energies of Biomolecules from Unperturbed Ensembles", G. Grigoryan,Journal of Computational Chemistry34: 2726–2741, 2013 [DOI].

"Mining Tertiary Structural Motifs for Assessment of Designability", J. Zhang, G. Grigoryan, Methods in Enzymology, 523: 21-40, 2013 [DOI].

"Structural Informatics, Modeling and Design with an Open Source Molecular Software Library (MSL)", D. W. Kulp, S. Subramaniam, J. E. Donald, B. T. Hannigan, B. K. Mueller, G. Grigoryan, A. Senes, Journal of Computational Chemistry, 33(20): 1645-1661, 2012 [DOI].

"Capture and Imaging of a Prehairpin Fusion Intermediate of the Paramyxovirus PIV5", Y. H. Kim, J. E. Donald, G. Grigoryan, G. P. Leser, A. Y. Fadeev , R. A. Lamb, W. F. DeGrado, Proc. Natl. Acad. Sci. USA, 108(52): 20992-20997, 2011 [DOI].

"Computational Design of Virus-like Protein Assemblies on Carbon Nanotube Surfaces", G. Grigoryan, Y. H. Kim, R. Acharya, K. Axelrod, R. M. Jain, L. Willis, M. Drndic, J. M. Kikkawa, and W. F. DeGrado, Science, 332(6033): 1071-1076, 2011 [DOI].

"Transmembrane Communication: General Principles and Lessons from the Structure and Function of the M2 Proton Channel, K+ Channels, and Integrin Receptors", G. Grigoryan, D. T. Moore, and W. F. DeGrado, Annual Review of Biochemistry, 80: 211-237, 2011 [DOI].

"Probing Designability via a Generalized Model of Helical Bundle Geometry", G. Grigoryan and W. F. DeGrado, Journal of Molecular Biology, 405(4): 1079-1100, 2011 [PubMED] [DOI].

"Identifying and Reducing Error in Cluster Expansion Approximations of Protein Energies", S. Hahn, O. Ashenberg, G. Grigoryan, and A. E. Keating, Journal of Computational Chemistry, 31(16): 2900-2914, 2010 [PubMED] [DOI].

"Identification of bZIP Interaction Partners of Viral Proteins HBZ, MEQ, BZLF1, and K-bZIP Using Coiled-Coil Arrays", A. W. Reinke, G. Grigoryan, and A. E. Keating, Biochemistry, 49(9): 1985-1997, 2010 [PubMED] [DOI].

"Design of Protein-interaction Specificity Gives Selective bZIP-binding Peptides", G. Grigoryan, A. W. Reinke, and A. E. Keating, Nature, 458: 859-864, 2009 [PubMED] [DOI].

"Cluster-Expansion Models for Flexible-Backbone Protein Energetics", J. R. Apgar, S. Hahn, G. Grigoryan, and A. E. Keating, Journal of Computational Chemistry, 30(15): 2402-2413, 2009 [PubMED] [DOI].

"Structural Specificity in Coiled-coil Interactions", G. Grigoryan and A. E. Keating, Current Opinion in Structural Biology, 18(4): 477-483, 2008 [PubMED] [DOI].

"Modest Membrane Hydrogen Bonds Deliver Rich Results", G. Grigoryan and W. F. DeGrado, Nature Chemical Biology, 4: 393-394, 2008 [PubMED] [DOI].

"Computing van der Waals Energies in the Context of the Rotamer Approximation", G. Grigoryan, A. Ochoa, and A. E. Keating, Proteins: Structure, Function, and Bioinformatics, 68(4): 863-878, 2007 [PubMED] [DOI].

"Ultra-fast Evaluation of Protein Conformational Energies Directly from Sequence", G. Grigoryan, F. Zhou, S. R. Lustig, G. Ceder, D. Morgan and A. E. Keating, PLoS Computational Biology, 2(6): e63, 2006 [PubMED] [DOI].

"Structure-based Prediction of bZIP Partnering Specificity", G. Grigoryan and A. E. Keating, Journal of Molecular Biology, 355(5): 1125-1142, 2006 [PubMED] [DOI].

"Coarse-Graining Protein Energetics in Sequence Variables", F. Zhou, G. Grigoryan, S. R. Lustig, A. E. Keating, G. Ceder, and D. Morgan, Physical Review Letters, 95(14): 148103, 2005 [PubMED] [DOI].

"Design of a Heterospecific, Tetrameric, 21-Residue Miniprotein with Mixed alpha/beta Structure", M. H. Ali, C. M. Taylor, G. Grigoryan, K. N. Allen, B. Imperiali, and A. E. Keating, Structure, 13(2): 225-234, 2005 [PubMED] [DOI].

"Point-based probabilistic surfaces to show surface uncertainty", G. Grigoryan and P. Rheingans, IEEE Transactions On Visualization And Computer Graphics, 10(5): 564-573, 2004 [PubMED] [DOI].

"Probabilistic Surfaces: Point Based Primitives to Show Surface Uncertainty", G. Grigoryan and P. Rheingans, Proceedings of IEEE Visualization, pp. 147-153, 2002 [DOI].

"Using Color to Understand Light Transmission", G. Grigoryan, I.T. Lima, Jr., T. Yu, V.S. Grigoryan, and C.R. Menyuk, Optics and Photonics News, 11(8): 44-50, 2000 [DOI].

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Karl E. Griswold

Lamppa J.W., Tanyos S.A., Griswold K.E. Engineering Escherichia coli for Soluble Expression and Single Step Purification of Active Human Lysozyme. Journal of Biotechnology (2013), 164, pp. 1-8

Choi Y., Griswold K.E., Bailey-Kellogg C. Structure-based Redesign of Proteins for Minimal T cell Epitope Content. Journal of Computational Chemistry (2013), 34(10), pp. 879-891

Lamppa J.W. and Griswold K.E. Alginate Lyase Exhibits Catalysis-Independent Biofilm Dispersion and Antibiotic Synergy. Antimicrobial Agents and Chemotherapy (2013), 57(1), pp. 137-145

Parker A.S., Choi Y.J., Griswold K.E., Bailey-Kellogg C. Structure-Guided Deimmunization of Therapeutic Proteins. Journal of Computational Biology (2013), 20(2), pp. 152-165

Osipovitch D.C., Parker A.S., Makokha C.D., Desrosiers J., Kett W.C., Moise L., Bailey-Kellogg C., Griswold K.E. Design and Analysis of Immune-Evading Enzymes for ADEPT Therapy. Protein Engineering, Design & Selection (2012), 25(10), pp. 613-624

Parker A.S., Griswold K.E., Bailey-Kellogg C. Optimization of combinatorial mutagenesis. Journal of Computational Biology (2011), 18(11), pp. 1-14

Parker A.S., Griswold K.E., Bailey-Kellogg C. Optimization of Therapeutic Proteins to Delete T-Cell Epitopes While Maintaining Beneficial Residue Interactions. Journal of Bioinformatics and Computational Biology (2011), 9(2), pp. 207-229

Lamppa J.W., Ackerman M.E., Lai J.I., Scanlon T.C., Griswold K.E. Genetically Engineered Alginate Lyase-PEG Conjugates Exhibit Enhanced Catalytic Function and Reduced Immunoreactivity. PLoS One (2011), 6(2): e17042

Gill A., Scanlon T.C., Osipovitch D.C., Madden D.R., Griswold K.E. Crystal structure of a charge engineered human lysozyme having enhanced bactericidal activity. PLoS One (2011), 6(3): e16788

Scanlon T.C., Teneback C.C., Gill A., Bement J.L., Lamppa J.W., Weiner J.A., LeClair L.W., Griswold, K.E. Enhanced antimicrobial activity of engineered human lysozyme. ACS Chemical Biology (2010), 5(9), pp. 809-818

Scanlon T.C., Jewell H.L., Gray E.C., Griswold K.E. The Monoclonal Myth. Bioengineered Bugs (2010), 1(3), pp. 1-4

Zheng W., Griswold K.E., Bailey-Kellogg C. Protein fragment swapping: A method for asymmetric, selective site-directed recombination. Journal of Computational Biology (2010), 17(3), pp. 459-475

Parker A.S., Zheng W., Griswold K.E., Bailey-Kellogg C. Optimization algorithms for functional deimmunization of therapeutic proteins. BMC Bioinformatics (2010) , 11(1), 180

Scanlon T.C., Gray E.C., Griswold K.E. Quantifying and Resolving Multiple Vector Transformants in S. cerevisiae Plasmid Libraries. BMC Biotechnology (2009), 9(1), 95

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Robert H. Gross

Carlson, J M, A Chakravarty, C E DeZiel, and R H Gross, “SCOPE: A Web Server for Practical de Novo Motif Discovery,” Nucleic Acids Research , 35 (2007) W259-W264, doi: 10.1093/nar/gkm310.

Chakravarty, A, J M Carlson, R S Khetani, and R H Gross, “A Novel Ensemble Learning Method for de Novo Computational Identification of DNA Binding Sites,” BMC Bioinformatics , 8:249 (2007).

Chakravarty, A, J M Carlson, R S Khetani, C E DeZiel, and R H Gross, “SPACER: Robust Identification of Cis-regulatory Elements with Non-contiguous Critical Residues,” Bioinformatics , 23:8 (2007) 1029-1031.

Carlson, J M, A Chakravarty, R S Khetani, and R H Gross, “Bounded Search for de Novo Identification of Degenerate Cis-regulatory Elements,” BMC Bioinformatics , 7:1 (May 2006) 254-285.

Carlson, J M, A Chakravarty, and R H Gross, “BEAM: A Beam Search Algorithm for the Identification of Cis-Regulatory Elements in Groups of Genes,” Journal of Computational Biology , 13:3 (April 2006) 686-701.

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Mary Lou Guerinot

Baxter, I, B Muthukumar, H C Park, P Buchner, B Lahner, J Danku, K Zhao, J Lee, M J Hawkesford, M L Guerinot, and D E Salt, “Variation in Molybdenum Content Across Broadly Distributed Populations of Arabidopsis thaliana Is Controlled by a Mitochondrial Molybdenum Transporter (MOT1),” PLoS Genetics , 4:2 (2008) e1000004.

Jeong, J, C Cohu, L Kerkeb, M Pilon, E L Connolly, and M L Guerinot, “Chloroplast Fe(III) Chelate Reductase Activity is Essential for Seedling Viability Under Iron Limiting Conditions,” Proc. Natl. Acad. Sci. U.S.A., 105:30 (2008) 10619-10624.

Baxter, I, O Vitek, B Lahner, B Muthukumar, M Borghi, J Morrissey, M L Guerinot, and D E Salt, “The Leaf Ionome as a Multivariable System to Detect a Plant’s Physiological Status,” Proc. Natl. Acad. Sci. U.S.A. 105:33 (2008) 12081-12086.

Kim, S A, T Punshon, A Lanzirotti, L Li, J M Alonso, J R Ecker, J Kaplan, and M L Guerinot, “Localization of Iron in Arabidopsis Seed Requires the Vacuolar Membrane Transporter VIT1,” Science , 314 (EPub Nov 2006) 1295-1298.

Eide, D J, S Clark, T M Nair, et al., “Characterization of the Yeast Ionome: A Genome-wide Analysis of Nutrient Mineral and Trace Element Homeostasis,” Genome Biology , 6:9 (2005) R77.

Colangelo, E P, and M L Guerinot, “The Essential Basic Helix-loop-helix Protein FIT1 is Required for the Iron Deficiency Response,” Plant Cell , 16 (2004) 3400-3412.

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Richard Holmes

Townsend, A. K., T. S. Sillett, N. K. Lany, S. A. Kaiser, N. L. Rodenhouse, M.S. Webster, and R. T. Holmes. 2013.  Warm springs, early lay dates, and double-brooding in a North American migratory songbird, the Black-throated Blue Warbler.  PLoS One 8(4): e59467. doi:10.1371/ 

Swatantran, A., R. Dubayah, S. Goetz, M. Hofton, M. G. Betts, M. Sun, M. Simard, and R. T. Holmes.  2012. Mapping migratory bird prevalence using     remote sensing data fusion.  PLoS One 7(1): doi:10.1371/journal.pone.0028922

Holmes, R. T.  2011. Birds in forest ecosystems: long-term research on populations and community processes in the Hubbard Brook Experimental Forest.  Forest Ecology and Management 262: 20-32

Goetz, S. J., S. Steinberg, M. Betts, R. T. Holmes, P. Doran, R. Dubayah, and M. Hofton. 2010. Lidar remote sensing variables predict breeding habitat of a Neotropical migrant bird. Ecology 91: 1569-1576

Faaborg, J., R.T. Holmes, et al. 2010. Recent advances in understanding migration systems of New World landbirds. Ecological Monographs, 80:3-48

Rodenhouse N.L., S.N. Matthews, K.P. McFarland, J.D. Lambert, L.R. Iverson, A. Prasad, T.S. Sillett, and R.T. Holmes. 2008. Potential effects of climate change on birds of the Northeast. Mitig. Adapt. Strat. Global Change 13: 517-540

Betts, M.G., N.L. Rodenhouse, T.S. Sillett, P.J. Doran, and R.T. Holmes. 2008. Dynamic occiupancy models reveal within-breeding season movement up a habitat quality gradient by a migrant songbird. Ecography 31: 592-600

Holmes, R.T. 2007. Understanding population change in migratory songbirds: long-term and experimental studies of Neotropical migrants in breeding and wintering areas. Ibis 149 (S2): 2-13

Johnson, M.D., T.W. Sherry, R.T. Holmes, and P.P. Marra. 2006. Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology 20: 1433-1444

Nagy, L.R., and R.T. Holmes. 2005. Food limits annual fecundity of a migratory songbird: an experimental study. Ecology 86: 675-681

Sillett, T.S., N.L. Rodenhouse, and R.T. Holmes. 2004. Experimentally reducing neighbor density affects reproduction and behavior of a migratory songbird. Ecology 85: 2467-2477

Rodenhouse, N.L., T.S. Sillett, P.J. Doran, and R.T. Holmes. 2003. Multiple density-dependent mechanisms regulate a migratory bird population during the breeding season. Proc. Royal Society London B 270:2105-2110

Jones, J., P. J. Doran and R.T. Holmes. 2003. Climate and food synchronize regional forest bird abundances. Ecology 84: 3024-3032

Rubenstein, D.R., C. P. Chamberlain, R.T. Holmes, et al. 2002. Linking breeding and wintering ranges of a Neotropical migrant songbird using stable isotopes. Science 295:591-593

Sillett, T.S., and R.T. Holmes. 2002. Variation in survivorship of a migratory songbird throughout its annual cycle. Journal of Animal Ecology 71:296-308

McPeek, M.A., N.L. Rodenhouse, T.W. Sherry, and R.T. Holmes. 2001. Site dependent population regulation: population-level regulation without individual-level interactions. Oikos 94:417-424

Holmes, R.T., and T.W. Sherry. 2001. Thirty-year bird population trends in an unfragmented temperate deciduous forest: importance of habitat change. Auk 118:589-610

Sillett, T.S., R.T. Holmes, and T.W. Sherry. 2000. Impacts of a global climate cycle on population dynamics of a migratory songbird. Science 288: 2040-2042

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Michael B. Hoppa

1. Ariel P, Hoppa MB, Ryan TA. Intrinsic variability in Pv, RRP size, Ca(2+) channel repertoire, and presynaptic potentiation in individual synaptic boutons. Front Synaptic Neurosci. 2012;4:9.

2. Hoppa MB, Lana B, Margas W, Dolphin AC, Ryan TA. α2δ expression sets presynaptic calcium channel abundance and release probability. Nature. 2012 May 13;486(7401):122-5.

3. Hoppa MB, Jones E, Karanauskaite J, Ramracheya R, Braun M, Collins SC, Zhang Q, Clark A, Eliasson L, Genoud C, Macdonald PE, Monteith AG, Barg S, Galvanovskis J, Rorsman P. Multivesicular exocytosis in rat pancreatic beta cells. Diabetologia. 2012

4. Collins SC, Hoppa MB, Walker JN, Amisten S, Abdulkhader F, Bengtsson M,Fearnside J, Ramracheya R, Toye AA, Zhang Q, Clark A, Gauguier D, Rorsman P. Progression of diet-induced diabetes in C57Bl6J mice involves functional dissociation of Ca2+ channels from secretory vesicles. Diabetes. 2010 May;59(5):1192-201.

5. Hoppa MB, Collins S, Ramracheya R, Hodson L, Amisten S, Zhang Q, Johnson P, Ashcroft FM, Rorsman P. Chronic palmitate exposure inhibits insulin secretion by dissociation of Ca(2+) channels from secretory granules. Cell Metabolism. 2009 Dec;10(6):455-65.

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Rebecca E. Irwin

McDermott, S. M., R. E. Irwin, and B. W. Taylor. Using economic instruments to develop effective management of invasive species: insights from a bioeconomic model. Ecological Applications, accepted.

Schaeffer, R. N. ‡, J. S. Manson, and R. E. Irwin. 2013. Effects of abiotic factors and species interactions on estimates of male plant function: a meta-analysis. Ecology Letters 16:399-408.

Cook, D., J. S. Manson, D. R. Gardner, K. D. Welch, and R. E. Irwin. 2013. Norditerpene alkaloid concentrations in tissues and floral rewards of larkspurs and impacts on pollinators. Biochemical Systematics and Ecology 48:123-131.

Brody, A. K. and R. E. Irwin. 2012. When resources don’t rescue: pollinators, nectar robbers and pre-dispersal seed predators limit compensation to herbivory in Ipomopsis aggregata. Oikos 121:1424-1434.

Adler, L. S. and R. E. Irwin. 2012. Nectar alkaloids decrease pollination and reproduction in a native plant. Oecologia 168:1033-41.

Zhang, C., R. E. Irwin, Y.Wang, Y.-P. He, Y.-P. Yang, Y.-W. Duan. 2011. Selective seed abortion in selfing plants in an alpine ecosystem induced by nectar robbing. New Phytologist 192:249-255.

Irwin, R. E. and A. K. Brody. 2011. Additive effects of herbivory, nectar robbing and seed predation on male and female fitness components of the host plant Ipomopsis aggregata. Oecologia 166:681-692.

Irwin, R. E., J. L. Bronstein, J. S. Manson, and L. Richardson. 2010. Nectar robbing: ecological and evolutionary perspectives. Annual Review of Ecology, Evolution and Systematics 41:271-292.

Burkle, L. A.‡ and R. E. Irwin. 2010. Beyond biomass: measuring the effects of community-level nitrogen enrichment on floral traits, pollinator visitation and plant reproduction. Journal of Ecology 98:705-717.

Wilke, B. J.† and R. E. Irwin. 2010. Variation in the phenology and abundance of flowering by native and exotic plants in subalpine meadows. Biological Invasions 12: 2363-2372.

Burkle, L.‡, and R. Irwin. 2009. Plant-pollinator networks across space and time: the importance of interannual variation and bottom-up nitrogen enrichment. Oikos 118:1816-1829.

Irwin, R. E. 2009. Realized tolerance to nectar robbing: compensation to floral enemies in Ipomopsis aggregata. Annals of Botany, Special Issue on Plant-Pollinator Interactions, 103:1425-1433.

Mitchell, R. J., R. E. Irwin, R. J. Flanagan‡, and J. D. Karron. 2009. Viewpoint: Ecology and evolution of plant-pollinator interactions. Annals of Botany, Special Issue on Plant-Pollinator Interactions, 103:1355-1363.

Burkle, L.‡ and R. Irwin. 2009. Nectar sugar limits larval growth of solitary bees (Hymenoptera: Megachilidae). Environmental Entomology 38:1293-1300.

Burkle, L. A.‡ and R. E. Irwin. 2009. The impact of nutrient addition on floral characters and pollination in two subalpine plants, Ipomopsis aggregata and Linum lewisii. Plant Ecology 203:83-98.

Sloan, C. D. ‡, E. J. Duell, X. Shi, R. Irwin, A. S. Andrew, S. Williams, and J. H. Moore. 2009. Ecogeographic genetic epidemiology. Genetic Epidemiology 33:281-289.

Elliott, S. E. ‡ and R. E. Irwin. 2009. Effects of flowering plant density on pollinator visitation, pollen receipt, and seed production in Delphinium barbeyi. American Journal of Botany 96:912-919.

Irwin, R. E., C. Galen, J. J. Rabenold†, R. Kaczorowski†, and M. L. McCutcheon†. 2008. Mechanisms of tolerance to floral larceny in two animal-pollinated wildflowers, Polemonium viscosum and Ipomopsis aggregata. Ecology 89:3093-3104.

Egan, J. F.† and R. E. Irwin. 2008. Evaluation of the field impact of an adventitious herbivore on an invasive plant, yellow toadflax, in Colorado, USA. Plant Ecology 199:99-114.

Irwin, R. E. and L. S. Adler. 2008. Nectar secondary compounds affect self-pollen transfer: implications for female and male plant reproduction. Ecology 89:2207-2217.

Elliott, S. E.‡, R. E. Irwin, L. S. Adler, and N. M. Williams. 2008. A nectar alkaloid, gelsemine, does not affect offspring performance of a native solitary bee, Osmia lignaria (Megachilidae). Ecological Entomology 33:298-304.

Brody, A. K., R. E. Irwin, M. L. McCutcheon†, and E. C. Parsons†. 2008. Interactions between nectar robbers and seed predators mediated by a shared host plant, Ipomopsis aggregata. Oecologia 155:75-84.

Burkle, L. A.‡, R. E. Irwin, and D. A. Newman‡. 2007. Predicting the effects of nectar robbing on plant reproduction: implications of pollen limitation and plant mating system.  American Journal of Botany 94:1935-1943.

McCall, A. C. and R. E. Irwin. 2006. Florivory: the intersection of pollination and herbivory. Ecology Letters 9:1351-1365.

Irwin, R. E. 2006. Consequences of direct versus indirect species interactions to selection on traits: pollination and nectar robbing in Ipomopsis aggregata. American Naturalist 167:315-328.

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Thomas P. Jack

Yang, Y and T Jack, “Defining Subdomains of the K Domain Important for Protein-Protein Interactions of Plant MADS Proteins,” Plant Molecular Biology , 55:1 (May 2004) 45-59.

“Molecular and Genetic Mechanisms of Floral Control,” The Plant Cell , 16 (March 2004) S1-S17.

Yang, Y, H Xiang, and T Jack, pistillata-5 , an Arabidopsis Floral Organ Identity Mutant with Defects in Petal Development, Plant Journal , (2003) 33 177-188.

Yang, Y, L Fanning, and T Jack, “The K Domain Mediates Heterodimerization of the Arabidopsis Floral Organ Identity Proteins, APETALA3 and PISTILLATA,” Plant Journal , 33 (2003) 47-60.

Jack, T, “Flower Development,” Encyclopedia of Plant and Crop Science , R Goodman (ed.) (2003) 464-467.

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Nicholas J. Jacobs

Morales DK, Grahl N, Okegbe C, Dietrich LE, Jacobs NJ, Hogan DA
Control of Candida albicans metabolism and biofilm formation by Pseudomonas aeruginosa phenazines.
MBio 2013 Jan 29; 4(1):e00526-12
PMID: 23362320

Morales DK, Jacobs NJ, Rajamani S, Krishnamurthy M, Cubillos-Ruiz JR, Hogan DA
Antifungal mechanisms by which a novel Pseudomonas aeruginosa phenazine toxin kills Candida albicans in biofilms.
Mol Microbiol 2010 Dec; 78(6):1379-92
PMID: 21143312

Measurement of protoporphyrinogen oxidase activity. Jacobs JM, Jacobs NJ. Curr Protoc Toxicol. (2001). May;Chapter 8:Unit 8

Polyclonal Mycobacterium avium infections in patients with AIDS: variations in antimicrobial susceptibilities of different strains of M. avium isolated from the same patient. von Reyn CF, Jacobs NJ, Arbeit RD, Maslow JN, Niemczyk S. J Clin Microbiol. (1995). Apr;33(4):1008-10.

Terminal enzymes of heme biosynthesis in the plant plasma membrane.   Jacobs JM, Jacobs NJ. Arch Biochem Biophys. (1995) Nov 10;323(2):274-8.

Inhibitory effect of disodium EDTA upon the growth of Staphylococcus epidermidis in vitro: relation to infection prophylaxis of Hickman catheters. Root JL, McIntyre OR, Jacobs NJ, Daghlian CP Antimicrob Agents Chemother. (1988) Nov; 32(11):1627-31

Protoporphyrinogen oxidation, a step in heme synthesis in soybean root nodules and free-living rhizobia.  Jacobs NJ, Borotz SE, Guerinot ML. (1989) J Bacteriol. Jan; 171(1):573-6

Protoporphyrinogen oxidation, an enzymatic step in heme and chlorophyll synthesis: partial characterization of the reaction in plant organelles and comparison with mammalian and bacterial systems. Jacobs JM, Jacobs NJ. Arch Biochem Biophys. (1984) Feb 15;229(1):312-9

Characterization and incidence of pigment production by human clinical group B streptococci. Merritt K, Jacobs NJ. (1978) J Clin Microbiol. Jul;8(1): 105-7

Effect of iron and ascorbate on uroporphyria in ascorbate-requiring mice as a model for porphyria cutanea tarda. Gorman N, Zaharia A, Trask HS, Szakacs JG, Jacobs NJ, Jacobs JM, Balestra D, Sinclair JF, Sinclair PR. Hepatology (2007). Jan; 45(1):187-94

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Anne R. Kapuscinski

Johnson, K. A., G. Dana, N. R. Jordan, K. J. Draeger, A. Kapuscinski, L. K. Schmitt Olabisi and P. B. Reich 2012. Using participatory scenarios to stimulate social learning for collaborative sustainable development. Ecology and Society 17(2): 9.

Dana, G., A.R. Kapuscinski and J. Donaldson. 2012. Integrating diverse scientific and practitioner knowledge in ecological risk analysis: a case study of biodiversity risk assessment in South Africa. Journal of Environmental Management 98: 134-146.

Hill, J.E., A. R. Kapuscinski and T. Pavlowich. 2011. Fluorescent transgenic zebra danio more vulnerable to predators than wild-type. Transactions of the American Fisheries Society 140(4): 101-105.

Pennington, K. M. and A. R. Kapuscinski. 2011. Predation and food limitation influence fitness traits of growth-enhanced transgenic and wild-type fish. Transactions of the American Fisheries Society 140:221-234.

Schmitt-Olabisi, L., A.R. Kapuscinski, K. Johnson, P. Reich, B. Stenquist, and K. Draeger. 2010. Using scenario visioning and participatory system dynamics modeling to investigate the future: Lessons from Minnesota 2050. Sustainability 2(8):2686-2706. (Accessible at http://www.mdpi.com/2071-1050/2/8/2686

Cooper, A.M., Kapuscinski, A.R., and Miller, L.M. 2010. Conservation of population structure and genetic diversity under captive breeding of remnant coaster brook trout (Salvelinus fontinalis) populations. Conservation Genetics 11(3): 1087-1093.

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Lee R. Lynd

Dumitrache, A., G. Wolfaardt, G. Allen, S.N. Liss, and L.R. Lynd. 2012. Form and Function of Clostridium thermocellum Biofilms. Appl. Environ. Microbiol. doi:10.1128/AEM.02563-12

Brown, S.D., A.M. Guss, T.V. Karpinets, J.M. Parks, N. Smolin, S. Yang, M.L. Land, D.M. Klingeman, A. Bhandiwad, M. Rodriguez, Jr., B. Raman, X. Shao, J.R. Mielenz, J.C. Smith, M. Keller, L.R. Lynd. 2011. Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. PNAS 108(33):13752-13757

Shaw, A.J., K.K. Podkaminer, S.G. Desai, J.S. Bardsley, S.R. Rogers, P.G. Thorne, D.A. Hogsett, and L.R. Lynd. 2008. Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield. PNAS 105:13769-13774

Lynd, L.R., M.S. Laser, D. Bransby, B.E. Dale, B. Davison, R. Hamilton, M. Himmel, M. Keller, J. D. McMillan, J. Sheehan, C.E. Wyman. 2008. How biotech can transform biofuels. Nature Biotechnology 26:169-172

Lynd, L.R., M. Laser, J. McBride, K. Podkaminer, J. Hannon. Energy myth three - High land requirements and an unfavorable energy balance preclude biomass ethanol from playing a large role in providing energy services. Invited chapter in: B. Sovacool and M. Brown (eds) Energy and American Society: Thirteen Myths Springer. 2007

Lu, Y., Y.-H. P. Zhang, L.R. Lynd. 2006. Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum. PNAS 103(44):16165-16169

Zhang, Y.-H.P., L.R. Lynd. 2005. Cellulose utilization by Clostridium thermocellum:bioenergetics and hydrolysis product assimilation. PNAS 102:7321-7325

Lynd, L.R., P.J. Weimer, W.H. van Zyl, I.S. Pretorius. 2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol. Mol. Biol. Rev. 66:506-577

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Robert A. Maue

Maue RA, Burgess RW, Wang B, Wooley CM, Seburn KL, Vanier MT, Rogers MA, Chang CC, Chang TY, Harris BT, Graber DJ, Penatti CA, Porter DM, Szwergold BS, Henderson LP, Totenhagen JW, Trouard TP, Borbon IA, Erickson RP. A novel mouse model of Niemann-Pick type C disease carrying a D1005G-Npc1 mutation comparable to commonly observed human mutations. Hum Mol Genet. 2012 Feb 15;21(4):730-50. (view details on MedLine)

Claudepierre T, Paques M, Simonutti M, Buard I, Sahel J, Maue RA, Picaud S, Pfrieger FW. Lack of Niemann-Pick type C1 induces age-related degeneration in the mouse retina. Mol Cell Neurosci. 2010 Jan;43(1):164-76. (view details on MedLine)

Fry M, Boegle AK, Maue RA. Differentiated pattern of sodium channel expression in dissociated Purkinje neurons maintained in long-term culture. J Neurochem. 2007 May;101(3):737-48. (view details on MedLine)

Maue RA. Understanding ion channel biology using epitope tags: progress, pitfalls, and promise. J Cell Physiol. 2007 Dec;213(3):618-25. Review. (view details on MedLine)

Paul CA, Reid PC, Boegle AK, Karten B, Zhang M, Jiang ZG, Franz D, Lin L, Chang TY, Vance JE, Blanchette-Mackie J, Maue RA. Adenovirus expressing an NPC1-GFP fusion gene corrects neuronal and nonneuronal defects associated with Niemann pick type C disease. J Neurosci Res. 2005 Sep 1;81(5):706-19. (view details on MedLine)

Paul CA, Boegle AK, Maue RA. Before the loss: neuronal dysfunction in Niemann-Pick Type C disease. Biochim Biophys Acta. 2004 Oct 11;1685(1-3):63-76. Review. (view details on MedLine)

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C. Robertson McClung

Hong, S, H-R Song, K Lutz, R A Kerstetter, T P Michael, and C R McClung, “Type II Protein Arginine Methyltransferase PRMT5 is required for circadian period determination in Arabidopsis thaliana ,” Proceedings of the National Academy of Sciences of the United States of America , 107:49 (2010) 21211-21216.

Salomé, P A, D Weigel, and C R McClung “The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation,” Plant Cell , 23:11 (2010) 3650-3661.

McClung, C R, and S J Davis, “Ambient thermometers in plants: from physiological outputs towards mechanisms of thermal sensing,” Current Biology 20:24 (2010) R1086-R1092.

McClung, C R, and R A Gutiérrez, “Network news: prime time for systems biology of the plant circadian clock.,” Current Opinion in Genetics and Development 20:6 (2010) 588-598.

Lou, P, Q Xie, X Xu, C E Edwards, M. Brock, C Weinig and C R McClung, “Genetic architecture of the circadian clock and flowering time in Brassica rapa ,” Theoretical and Applied Genetics , 123:3 (2011) 397-409.

Edwards, C.E., B.E. Ewers, D.G. Williams, Q. Xie, P. Lou, X. Xu,C.R. McClung and C. Weinig, “The genetic architecture of ecophysiological and circadian traits in Brassica rapa ,” Genetics , 189:1, (2011) 375-390.

“The genetics of plant clocks,” Advance in Genetics , 74 (2011) 105-138.

Edwards, C E, B E Ewers, C R McClung, P Lou, and C Weinig, “Quantitative variation in water-use efficiency across water regimes and its relationship with circadian, physiological, vegetative, reproductive, and leaf gas-exchange traits,” Molecular Plant 5: (2012) 653-668.

Lou, P, J Wu, F Cheng, L G Cressman, X Wang and C R McClung, “Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa ,” Plant Cell, 24:6 (2012) 2415-2426.

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Mark Alan McPeek

Selected Works can be found at: http://www.enallagma.com

George A. O'Toole

Sisti F, Ha DG, O'Toole GA, Hozbor D, Fernández J. Cyclic-di-GMP signalling regulates motility and biofilm formation in Bordetella bronchiseptica. Microbiology. 2013 May;159(Pt 5):869-79. doi: 10.1099/mic.0.064345-0. Epub 2013 Mar 8. PubMed PMID: 23475948.

Anderson GG, Kenney TF, Macleod DL, Henig NR, O'Toole GA. Eradication of Pseudomonas aeruginosa biofilms on cultured airway cells by a fosfomycin/tobramycin antibiotic combination. Pathog Dis. 2013 Feb;67(1):39-45. doi: 10.1111/2049-632X.12015. Epub 2013 Jan 10. PubMed PMID: 23620118.

Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL. Gut microbial colonisation in premature neonates predicts neonatal sepsis. Arch Dis Child Fetal Neonatal Ed. 2012 Nov;97(6):F456-62. doi: 10.1136/fetalneonatal-2011-301373. Epub 2012 May 6. PubMed PMID: 22562869.

Yu Q, Griffin EF, Moreau-Marquis S, Schwartzman JD, Stanton BA, O'Toole GA. In vitro evaluation of tobramycin and aztreonam versus Pseudomonas aeruginosa biofilms on cystic fibrosis-derived human airway epithelial cells. J Antimicrob Chemother. 2012 Nov;67(11):2673-81. doi: 10.1093/jac/dks296. Epub 2012 Jul 26. PubMed PMID: 22843834; PubMed Central PMCID: PMC3468082.

Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA. The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol. 2012 Nov;194(21):5728-38. doi: 10.1128/JB.01184-12. Epub 2012 Aug 10. PubMed PMID: 22885297; PubMed Central PMCID: PMC3486085.

Ivanov IE, Boyd CD, Newell PD, Schwartz ME, Turnbull L, Johnson MS, Whitchurch CB, O'Toole GA, Camesano TA. Atomic force and super-resolution microscopy support a role for LapA as a cell-surface biofilm adhesin of Pseudomonas fluorescens. Res Microbiol. 2012 Nov-Dec;163(9-10):685-91. doi: 10.1016/j.resmic.2012.10.001. Epub 2012 Oct 9. PubMed PMID: 23064158; PubMed Central PMCID: PMC3518552.

Kuchma SL, Griffin EF, O'Toole GA. Minor pilins of the type IV pilus system participate in the negative regulation of swarming motility. J Bacteriol. 2012 Oct;194(19):5388-403. doi: 10.1128/JB.00899-12. Epub 2012 Aug 3. PubMed PMID: 22865844; PubMed Central PMCID: PMC3457191.

Ballok AE, Bahl CD, Dolben EL, Lindsay AK, St Laurent JD, Hogan DA, Madden DR, O'Toole GA. Epoxide-mediated CifR repression of cif gene expression utilizes two binding sites in Pseudomonas aeruginosa. J Bacteriol. 2012 Oct;194(19):5315-24. doi: 10.1128/JB.00984-12. Epub 2012 Jul 27. PubMed PMID: 22843844; PubMed Central PMCID: PMC3457200.

Hampton TH, Ballok AE, Bomberger JM, Rutkowski MR, Barnaby R, Coutermarsh B, Conejo-Garcia JR, O'Toole GA, Stanton BA. Does the F508-CFTR mutation induce a proinflammatory response in human airway epithelial cells? Am J Physiol Lung Cell Mol Physiol. 2012 Sep 15;303(6):L509-18. doi: 10.1152/ajplung.00226.2011. Epub 2012 Jul 20. PubMed PMID: 22821996; PubMed Central PMCID: PMC3468482.

Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, Morrison HG, Paster BJ, O'Toole GA. Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability. J Bacteriol. 2012 Sep;194(17):4709-17. doi: 10.1128/JB.00566-12. Epub 2012 Jun 29. PubMed PMID: 22753064; PubMed Central PMCID: PMC3415522.

Madan JC, Koestler DC, Stanton BA, Davidson L, Moulton LA, Housman ML, Moore JH, Guill MF, Morrison HG, Sogin ML, Hampton TH, Karagas MR, Palumbo PE, Foster JA, Hibberd PL, O'Toole GA. Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures. MBio. 2012 Aug 21;3(4). doi:pii: e00251-12. 10.1128/mBio.00251-12. Print 2012. PubMed PMID: 22911969; PubMed Central PMCID: PMC3428694.

Gifford AH, Moulton LA, Dorman DB, Olbina G, Westerman M, Parker HW, Stanton BA, O'Toole GA. Iron homeostasis during cystic fibrosis pulmonary exacerbation. Clin Transl Sci. 2012 Aug;5(4):368-73. doi: 10.1111/j.1752-8062.2012.00417.x. Epub 2012 Jun 1. PubMed PMID: 22883617; PubMed Central PMCID: PMC3419499.

Boyd CD, Chatterjee D, Sondermann H, O'Toole GA. LapG, required for modulating biofilm formation by Pseudomonas fluorescens Pf0-1, is a calcium-dependent protease. J Bacteriol. 2012 Aug;194(16):4406-14. doi: 10.1128/JB.00642-12. Epub 2012 Jun 15. PubMed PMID: 22707708; PubMed Central PMCID: PMC3416268.

Chatterjee D, Boyd CD, O'Toole GA, Sondermann H. Structural characterization of a conserved, calcium-dependent periplasmic protease from Legionella pneumophila. J Bacteriol. 2012 Aug;194(16):4415-25. doi: 10.1128/JB.00640-12. Epub 2012 Jun 15. PubMed PMID: 22707706; PubMed Central PMCID: PMC3416269.

O'Toole GA, Wathier M, Zegans ME, Shanks RM, Kowalski R, Grinstaff MW. Diphosphonium ionic liquids as broad-spectrum antimicrobial agents. Cornea. 2012 Jul;31(7):810-6. doi: 10.1097/ICO.0b013e31823f0a86. PubMed PMID: 22236790; PubMed Central PMCID: PMC3336019.

Twomey KB, O'Connell OJ, McCarthy Y, Dow JM, O'Toole GA, Plant BJ, Ryan RP. Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa. ISME J. 2012 May;6(5):939-50. doi: 10.1038/ismej.2011.167. Epub 2011 Dec 1. PubMed PMID: 22134647; PubMed Central PMCID: PMC3329111.

Mintzer MA, Dane EL, O'Toole GA, Grinstaff MW. Exploiting dendrimer multivalency to combat emerging and re-emerging infectious diseases. Mol Pharm. 2012 Mar 5;9(3):342-54. doi: 10.1021/mp2005033. Epub 2011 Dec 13. Review. PubMed PMID: 22126461.

Boyd CD, O'Toole GA. Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems. Annu Rev Cell Dev Biol. 2012;28:439-62. doi: 10.1146/annurev-cellbio-101011-155705. Review. PubMed PMID: 23057745.

Ha DG, Merritt JH, Hampton TH, Hodgkinson JT, Janecek M, Spring DR, Welch M, O'Toole GA. 2-Heptyl-4-quinolone, a precursor of the Pseudomonas quinolone signal molecule, modulates swarming motility in Pseudomonas aeruginosa. J Bacteriol. 2011 Dec;193(23):6770-80. doi: 10.1128/JB.05929-11. Epub 2011 Sep 30. PubMed PMID: 21965567; PubMed Central PMCID: PMC3232867.

Newell PD, Yoshioka S, Hvorecny KL, Monds RD, O'Toole GA. Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1. J Bacteriol. 2011 Sep;193(18):4685-98. doi: 10.1128/JB.05483-11. Epub 2011 Jul 15. PubMed PMID: 21764921; PubMed Central PMCID: PMC3165641.

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David Ross Peart

Landis, R M, and D R Peart, “Early Performance Predicts Canopy Attainment across Life Histories in Subalpine Forest Trees,” Ecology , 86 (2005) 63-72.

Fagan, M E, and D R Peart, “Impact of the Invasive Shrub Glossy Buckthorn (Rhamnus frangula L.) on Juvenile Recruitment by Canopy Trees,” Forest Ecology and Management , 194 (2004) 95-107.

Blundell, A G, and D R Peart, “Density Dependent Population Dynamics of a Dominant Rain Forest Canopy Tree,” Ecology , 85 (2004) 704-715.

Blundell, A G, and D R Peart, “Recruitment Failure Following Mast Fruiting in a Southeast Asian Dipterocarp Forest,” Journal of Tropical Ecology , 20 (2004) 229-231.

Zens, M S, and D R Peart, “Dealing with Death Data: Individual Hazards, Mortality and Bias,” Trends in Ecology and Evolution , 18 (2003) 366-373.

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Kevin J. Peterson

Peterson, K. J., Su, Y.-H., Arnone, M. I., Swalla, B. J., and King, B. microRNAs support the monophyly of enteropneust hemichordates. (2013) Journal of Experimental Zoology (Molecular and Developmental Evolution) in press.

Laflamme, M., Darroch, S. A. F., Tweet, S. M., Peterson, K. J., Erwin, D. H. (2013). The end of the Ediacara biota: Extinction, biotic replacement, or Cheshire Cat? Gondwana Research 23, 558-573.

Robinson, J. M., Sperling, E. A., Bergum, B., Adamski, M., Nichols, S. A., Adamska, M., and Peterson, K. J. (2013). The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. Journal of Experimental Zoology (Molecular and Developmental Evolution) 320B 84-93.

Tarver, J. E., Donoghue, P. C. J., and Peterson, K. J. (2012). Do miRNAs have a deep evolutionary history? Bioessays 34, 857-866.

Erwin, D. H. Laflamme, M., Tweedt, S. M., Pisani, D., and Peterson, K. J. (2011). The Cambrian conundrum: Early divergence and later ecological success in the early history of animals. Science, 334, 1091-1097.

Campbell, L. I., Rota-Stabellli, O., Marchioro, T., Longhorn, S. J., Edgecombe, G. D., Telford, M. J., Philippe, H., Rebecchi, L., Peterson, K. J., and Pisani, D. (2011). MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest the velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences, USA 108, 15920-15924.

Anderson, B. M., Pisani, D., Miller, A. I., and Peterson, K. J. (2011). The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record. Geology 2011, 971-974.

Campo-Paysaa, F., Sémon, M., Cameron, R. A., Peterson, K. J., and Schubert, M. (2011). miRNA complements in deuterostomes: origin and evolution of miRNAs. Evolution & Development 13, 15-27.

Philippe, H., Brinkmann, H., Copley, R. R., Moroz, L. L., Nakano, H., Poustka, A. J., Wallberg, A., Peterson, K. J., and Telford, M. J. (2011). Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470, 255-258.

Sperling, E. A., Peterson, K. J., and LaFlamme, M. (2010). Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran ocean Geobiology 9, 24-33.

Hydra Genome Consortium (2010). The dynamic genome of Hydra. Nature 464, 592-596.

Rota-Stabellli, O., Campbell, L., Brinkmann, H., Edgecombe, G. D., Longhorn, S. J., Peterson, K. J., Pisani, D., Philippe, H., and Telford, M. (2010). A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings of the Royal Society of London B Biological Sciences 278, 298-306.

Heimberg, A. M., Cowper-Sal lari, R., Sémon, M., Donoghue, P. C. J., and Peterson, K. J. (2010). microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences, USA 107, 19379-19383.

Sperling, E. A., Robinson, J. M., Pisani, D., and Peterson, K. J. (2010). Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Mry missing Precambrian fossil record of siliceous-sponge spicules. Geobiology 8, 24-36.

Sperling, E. A., Vinther, J., Moy, V. N., Wheeler, B. M., Sémon, M., Briggs, D. E. G., and Peterson, K. J. (2009). MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings of the Royal Society of London B Biological Sciences 276, 4315-4322.

Sperling, E. A., Peterson, K. J., and Pisani, D. (2009). Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution 26, 2261-2274.

Peterson, K. J., Dietrich, M. R., and McPeek, M. A. (2009). MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 31, 736-747.

Wheeler, B. M., Heimberg, A. M., Moy, V. N., Sperling, E. A., Holstein, T. W., Heber, S., and Peterson, K. J. (2009). The deep evolution of metazoan microRNAs. Evolution & Development 11, 50-68.

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Tracy Punshon

Punshon, T., K.D. Hirschi, A. Lanzirotti, B. Lai, and M.L. Guerinot (2012), The role of CAX1 and CAX3 in elemental distribution and abundance in Arabidopsis seed. Plant Physiology. Plant Physiology 158 (1) p352-362.

Jackson BP, Taylor VF, Karagas MR, Punshon T, Cottingham KL. Arsenic, organic foods and brown rice syrup. Environmental Health Perpectives. 2012; In Press

Donner, E., T. Punshon, M.L. Guerinot, and E. Lombi (2012), Understanding metal(loid) processes in plant through the integration of synchrotron techniques and plant molecular biology. Analytical Bioanalytical Chemistry. ePub ahead of print

Carey, A.M., E. Lombi, E. Donner, T. Punshon, B.P. Jackson, M.D. de Jonge, A.H. Price, and A.A. Meharg (2011) Arsenic, germanium and selenium speciation and localization in rice grain. Analytical Bioanalytical Chemistry. Anal Bioanal Chem. 2011 Dec 8. PMID: 22159463

Carey, A.M., G.J. Norton, C. Deacon, K.G. Scheckel, E. Lombi, T. Punshon, M.L. Guerinot, A. Lanzirotti, M. Newville, Y. Choi, A.H. Price, and A.A. Meharg (2011). Phloem transport of arsenic species from flag leaf to grain during grain filling. New Phytologist,192(1): p. 87-98.

Karagas, M.R., A.S. Andrew, H.H. Nelson, Z. Li, T. Punshon, A. Schned, C.J. Marsit, J.S. Morris, J.H. Moore, A.L. Tyler, D. Gilbert-Diamond, M.L. Guerinot, and K.T. Kelsey (2011), SLC39A2 and FSIP1 polymorphisms as potential modifiers of arsenic-related bladder cancer. Human Genetics. Hum Genetics 131 (3), p453-461.

Gilbert-Diamond D, Cottingham KL, Gruber JF, Punshon T, Sayarath V, Gandolfi AJ, Baker ER, Jackson BP, Folt CL, Karagas MR. Rice consumption contributes to arsenic exposure in US women. Proc Natl Acad Sci U S A. 2011 Dec 5. PMID: 22143778

Gruber, J.F., M.R. Karagas, D. Gilbert-Diamond, P. Bagley, M.S. Zens, V. Sayarath, T. Punshon, J.S. Morris, and K.L. Cottingham (2011), Associations between toenail arsenic accumulation and dietary factors in a New Hampshire population. Nutrition Journal. In Press.

Jackson, B.P., V.F. Taylor, K.L. Cottingham, and T. Punshon (2011), Arsenic concentration and speciation in infant formulas and first foods. Pure and Applied Chemistry 84, p215-224

Chu, H-H., Chiecko, J., Punshon, T., Lanzirotti, A. Lahner, B., Salt, D. and Walker, E. (2010 In press) Successful reproduction requires the function of Arabidopsis YELLOW STRIPE-LIKE1 and1TRACY PUNSHONDepartment of Biological Sciences, Dartmouth College, HB6044, Hanover, NH, 03755. Tel(603) 646 1037, Fax (603) 646 1347: tracy.punshon@dartmouth.eduYELLOW STRIPE-LIKE3 metal-nicotianamine transporters in both vegetative and reproductivestructures. Plant Physiology DOI:10.1104/pp110.159103

Punshon T, Guerinot ML, Lanzirotti A (2009) Using synchrotron x-ray fluorescence microprobesin the study of metal homeostasis in plants. Annals of Botany 103: 665-672

High WA, Ranville JF, Brown M, Punshon T, Lanzirotti A, Jackson BP (2009) Gadoliniumdeposition in nephrogenic systemic fibrosis: An examination of tissue using synchrotron x-rayfluorescence spectroscopy. Journal of the American Academy of Dermatology 62: 38-44

Kim SA, Punshon T, Lanzirotti A, Liangtao L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML (2006)Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1.Science 314: 1295-1298

Burger J, Murray S, Gaines KF, Punshon T, Shukla T, Dixon C, Gochfield M (2006) Elementlevels in snakes in South Carolina: Differences between a contaminated and a reference site onthe Savannah River Site. Environmental Monitoring and Assessment 112: 35-52

Punshon T, Lanzirotti A, Harper S, Bertsch PM, Burger J (2005) Distribution and speciation ofmetals in annual rings of black willow. Journal of Environmental Quality 34: 1165-1173

Punshon T, Jackson BP, Lanzirotti A, Hopkins W, Bertsch P, Burger J (2005) Application ofsynchrotron x-ray microbeam spectroscopy to the determination of metal distribution andspeciation in biological tissues. Spectroscopy Letters 38: 343-363

Punshon T, Jackson BP, Bertsch PM, Burger J (2004) Mass loading of nickel and uranium onplant surfaces: Application of LA-ICP-MS. Journal of Environmental Monitoring 6: 153-159

Punshon T, Gaines KF, Jenkins Jr. RA (2003) Bioavailability and trophic transfer of sedimentbound Ni and U in a southeastern wetland system. Archives of Environmental Contaminationand Toxicology 44: 30-35

Punshon T, Gaines KF, Bertsch PM, Burger J (2003) Bioavailability of uranium and nickel tovegetation in a contaminated riparian ecosystem. Environmental Toxicology and Chemistry 22:1146-1154

Punshon T, Bertsch PM, Lanzirotti A, McLeod KW, Burger J (2003) Geochemical signature ofcontaminated sediment remobilization revealed by spatially resolved X-ray microanalysis ofannual rings of Salix nigra L. Environmental Science and Technology 37: 1766-1774

Punshon T, Adriano DC, Weber JT (2002) Restoration of drastically eroded land using coal flyash and poultry biosolid. The Science of The Total Environment 296: 209-225

Punshon T, Adriano DC, Weber JT (2001) Effect of Flue Gas Desulfurization Residue on PlantEstablishment and Soil and Leachate Quality. Journal of Environmental Quality 30: 1071-1080

Punshon T, Dickinson NM (1999) Heavy Metal Resistance and Accumulation Characteristics inWillows. International Journal of Phytoremediation 1: 361-386

Punshon T, Dickinson NM (1997) Acclimation of Salix to metal stress. New Phytologist 137: 303-314

Dickinson NM, Punshon T (1997) Mobilisation of heavy metals using short rotation coppice. Aspects of Applied Biology 49: 285-292

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Nicholas James Reo

Reo, N. J. and K. P. Whyte. 2012. Morality and Hunting as Elements of Traditional Ecological Knowledge. Human Ecology 40(1).

Reo, N. J. 2011. The Importance of Belief Systems in Traditional Ecological Knowledge Initiatives. International Indigenous Policy Journal 2(4).

McConnell, W. J., J. D. A. Millington, N. J. Reo, et al. 2011. Research on Coupled Human and Natural Systems (CHANS): Approach, Challenges and Strategies. Bulletin of the Ecological Society of America 92: 218–228.

Reo, N. J. and J. W. Karl 2010. Tribal and state ecosystem management regimes influence forest regeneration. Forest Ecology and Management 260 (5).

Reo, N. J. 2009. Ash trees, Indian communities and the emerald ash borer. Unpublished article available online at www.emeraldashborer.info/educational.cfm

Kazmierski, J., M. Kram, E. Mills, D. Phemister, N. J. Reo, et al. 2004. Conservation planning at the landscape scale: a landscape ecology method for regional land trusts. Journal of Environmental Planning and Management 47 (5).

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G. Eric Schaller

Hill, K., Mathews, D.E., Kim, H.J., Street, I.H., Wildes, S.L., Chiang, Y.H., Mason, M.G., Alonso, J.M., Ecker, J.R., Kieber, J.J., and Schaller, G.E. (2013) Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiol. 162:212-224.

Shakeel, S.N., Wang, X., Binder, B.M., and Schaller, G.E. (2013) Mechanisms of signal transduction by ethylene: Overlapping and non-overlapping signaling roles in a receptor family. AoB PLANTS. doi: 10.1093/aobpla/plt010

Chiang, Y.-H., Zubo, Y.O., Tapken, W., Kim, H.J., Lavanway, A.M., Howard, L., Pilon, M., Kieber, J.J., Schaller, G.E. (2012) The GATA transcription factors GNC and CGA1 positively regulate chloroplast development, growth, and division in Arabidopsis. Plant Physiol. 160: 332-348.

Hall, B.P., Shakeel, S.N., Amir, M., Haq, N.U., Qu, X. and Schaller, G.E. (2012) Histidine-kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol. 159:682-95

Tsai, Y.-C., Weir, N.R., Hill, K., Zhang, W., Kim, H.J., Shiu, S.-H., Schaller, G. E., Kieber, J.J. (2012) Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiol. 158:1666-84

Schaller, G.E., Shiu, S.H., and Armitage, J.P. (2011) Two-component systems and their co-option for eukaryotic signal transduction. Current Biology. 21:R320-R330

Mason M.G., Jha D., Salt D.E., Tester M., Hill K., Kieber J.J., Schaller G.E. (2010) Type-B response regulators ARR1 and ARR12 regulate expression of AtHKT1;1 and accumulation of sodium in Arabidopsis shoots. Plant J. 64:753-763

Chen, Y.-F., Gao, Z., Kerris III, R.J., Wang, W., Binder, B.M., Schaller, G.E. (2010) Ethylene receptors function as components of high-molecular-mass protein complexes in Arabidopsis. PLoS ONE, 5:e8640. doi:10.1371/journal.pone.0008640.

Kieber, J.J., and Schaller, G.E. (2010) The perception of cytokinin: A story 50 years in the making. Plant Physiology.154: 487-492.

Argyros, R.D., Mathews, D.E., Chiang, Y.-H., Palmer, C.M., Thibault, D.M., Etheridge, N., Argyros, D.A., Mason, M.G., Kieber, J.J., and Schaller, G.E. (2008) Type-B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20:2102-2116

Gao, Z., Wen, C.-K., Binder, B.M.,, Chen, Y.-F., Chang, J., Chiang, Y.-H., Kerris III, R.J., Chang, C., Schaller, G.E. (2008) Heteromeric interactions among ethylene receptors mediate signaling in Arabidopsis. J. Biol. Chem. 283:23081-23810

Chen, Y.-F., Shakeel, S.N., Bowers, J., Zhao-X.-C., Etheridge, N., and Schaller, G.E. (2007) Ligand-induced degradation of the ethylene receptor ETR2 through a proteasome-dependent pathway in Arabidopsis. J. Biol. Chem. 282: 24752 – 24758

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Roger D. Sloboda

Werner-Petersen, R and RD Sloboda.  "Methylation of Structural Components of the Axoneme Occurs During Flagellar Disassembly,"  Biochemistry,(2013) 52:8501-09.

Schneider, M J, M Ulland, and R D Sloboda, “A Protein Methylation Pathway in Chlamydomonas Flagella Is Active during Flagellar Resorption,” Molecular Biology of the Cell , 19 (2008) 4319-4327.

Sloboda, R D, and J L Rosenbaum, “Making Sense of Cilia and Flagella,” Journal of Cell Biology , 179:4 (2007) 575-582. http://www.jcb.org/cgi/content/full/179/4/575

Sloboda, R D, and L Howard, “Localization of EB1, IFT Polypeptides, and Kinesin-2 in Chlamydomonas Flagellar Axonemes via Immunogold Scanning Electron Microscopy,” Cell Motility and the Cytoskeleton , 64:6 (2007) 446-460. http://www3.interscience.wiley.com/cgi-bin/fulltext/114130035/PDFSTART

Kitareewan, S, B D Roebuck, E Demidenko, R D Sloboda, and E Dmitrovsky, “Lysosomes and Trivalent Arsenic Treatment in Acute Promyelocytic Leukemia,” Journal of the National Cancer Institute , 99:1 (2007) 41-52. http://jnci.oxfordjournals.org/cgi/content/abstract/99/1/41

“Intraflagellar Transport and the Flagellar Tip Complex,” Journal of Cellular Biochemistry , 94:2 (2005) 266-272. http://www3.interscience.wiley.com/cgi-bin/fulltext/109752348/HTMLSTART??

Pedersen, L B, S Geimer, R D Sloboda, and J L Rosenbaum, “The Microtubule Plus End-tracking Protein EB1 is localized to the Flagellar Tip and Basal Bodies in Chlamydomonas reinhardtii ,” Current Biology , 13 (2003) 1969-1974. http://www.current-biology.com/content/article/abstract?uid=PIIS09609822...

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Elizabeth F. Smith

DiPetrillo, C., and E.F. Smith. (2010) Pcdp1 is a central apparatus protein that binds Ca 2+ -calmodulin and regulates ciliary motility. Journal of Cell Biology 189(3):601-612

Straschil, U., A. Talman, D. Ferguson, K. Bunting, Z. Xu, Liz Bailes, J. Coates, T. Holder, E.F. Smith, and R. Tewari. (2010) The armadillo repeat protein PF16 is essential for flagellar structure and function in Plasmodium male gametes. PLoS ONE . Vol. 5:10 e12901

Smith, E.F. and R. Rohatgi. (2011) Cilia 2010: The surprise organelle of the decade. Science Signaling. 4:55 mr1. 

Dymek, E.E., T. Heuser, D. Nicastro and E.F. Smith. (2011) The CSC is required for complete radial spoke assembly and wild-type ciliary motility. Molecular Biology of the Cell 22(14):2520-31

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38 .

Goduti, D., and E.F. Smith. (2012) Analyses of functional domains within the PF6 protein of the central apparatus reveal a role for PF6 sub-complex members in regulating flagellar beat frequency. Cytoskeleton 69(3):179-94

Dymek, E.E. and E.F. Smith. (2012) Chlamydomonas PF19 encodes the p60 subunit of katanin and is required for central apparatus assembly and motility. J. Cell Science 125(Pt 14):3357-66

Brown J.M., C. DiPetrillo , E.F. Smith, G.B. Witman. (2012) A FAP46 mutant provides new insights into the function and assembly of the C1d complex of the ciliary central apparatus.  J Cell Science 125(16):3904-13

Heuser, T., E.E. Dymek, J. Lin, E.F. Smith, and D. Nicastro. (2012) The CSC connects three major axonemal complexes involved in dynein regulation. Molecular Biology of the Cell 23(16):3143-55

DiPetrillo, C. and E.F. Smith. (2013) Methods for analysis of calcium / calmodulin signaling in cilia and flagella.  Methods in Enzymology, 524: 37-57.

Perrone, C.A., D. Tritschler, R. Bower, E. T. O'Toole, M. J. Wargo, E. F. Smith, and M. E. Porter. BOP2 encodes a novel WD-repeat protein that regulates inner arm dynein activity. (in preparation)
 

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Paula R. Sundstrom

Hogan DA, Sundstrom PThe Ras/cAMP/PKA signaling pathway and virulence in Candida albicans.Future Microbiol 2009 Dec; 4(10):1263-70PMID: 19995187

Rollenhagen C, Wollert T, Langford GM, Sundstrom PStimulation of cell motility and expression of late markers of differentiation in human oral keratinocytes by Candida albicans.Cell Microbiol 2009 Jun; 11(6):946-66PMID: 19302578

Wolyniak MJ, Sundstrom PRole of actin cytoskeletal dynamics in activation of the cyclic AMP pathway and HWP1 gene expression in Candida albicans.Eukaryot Cell 2007 Oct; 6(10):1824-40PMID: 17715368

Ponniah G, Rollenhagen C, Bahn YS, Staab JF, Sundstrom PState of differentiation defines buccal epithelial cell affinity for cross-linking to Candida albicans Hwp1.J Oral Pathol Med 2007 Sep; 36(8):456-67PMID: 17686003

Kim S, Wolyniak MJ, Staab JF, Sundstrom PA 368-base-pair cis-acting HWP1 promoter region, HCR, of Candida albicans confers hypha-specific gene regulation and binds architectural transcription factors Nhp6 and Gcf1p.Eukaryot Cell 2007 Apr; 6(4):693-709PMID: 17220463

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Brad W. Taylor

Taylor, B W, C A Keep, A S Flecker, R O Hall Jr, B J Koch, L M Tronstand, and A J Ulseth, “Improving the Fluorometric Ammonium Method: Matrix Effects, Background Fluorescence, and Standard Additions,” Journal of the North American Benthological Society , 26:2 (2006) 167-177.

Taylor, B W, A S Flecker, and R O hall Jr, “Loss of a Harvested Fish Species Disrupts Carbon Flow in a Diverse Tropical River,” Science , 313:5788 (2006) 833-836.

Allan, J D, R Abell, Z Hogan, C Revenga, B W Taylor, R L Welcomme, and K Winemiller, “Overfishing of Inland Waters,” Bioscience , 55:12 (2005) 1041-1051.

Flecker, A S and B W Taylor, “Tropical Fishes as Biological Bulldozers: Density Effects on Spatial Heterogeneity and Species Diversity,” Ecology , 85:8 (2005) 2267-2278.

Taylor, B W and I R Irwin, “Linking Economic Activities to the Distribution of Exotic Plants,” Proceedings of the National Academy of Sciences of the United States of America , 101:51 (2004) 17725-17730.

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Ronald K. Taylor

Secretion of TcpF by the Vibrio cholerae Toxin Co-regulated Pilus Biogenesis Apparatus requires an N-terminal determinant. Megli CJ, Taylor RK. Journal of bacteriology J Bacteriol. 2013 Apr 5. [Epub ahead of print] PMID: 23564177

Characterization of BreR interaction with the bile response promoters breAB and breR in Vibrio cholerae. Cerda-Maira FA, Kovacikova G, Jude BA, Skorupski K, Taylor RK..J Bacteriol. 2013 Jan;195(2):307-17. doi: 10.1128/JB.02008-12. Epub 2012 Nov 9. PMID: 23144245.

The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH. Taylor JL, De Silva RS, Kovacikova G, Lin W, Taylor RK, Skorupski K, Kull FJ. Mol Microbiol. 2012 Feb;83(3):457-70. doi: 10.1111/j.1365-2958.2011.07919.x. Epub 2012 Jan 10. PMID: 22053934.

Vibriocidal assays to determine the antibody titer of patient sera samples. Son MS, Taylor RK. Curr Protoc Microbiol. 2011 Nov;Chapter 6:Unit6A.3. doi: 10.1002/9780471729259.mc06a03s23. PMID: 22045586.

Characterization of Vibrio cholerae O1 El Tor biotype variant clinical isolates from Bangladesh and Haiti, including a molecular genetic analysis of virulence genes. Son MS, Megli CJ, Kovacikova G, Qadri F, Taylor RK. J Clin Microbiol. 2011 Nov;49(11):3739-49. doi: 10.1128/JCM.01286-11. Epub 2011 Aug 31. PMID: 21880975

Protection and attachment of Vibrio cholerae mediated by the toxin-coregulated pilus in the infant mouse model. Krebs SJ, Taylor RK. J Bacteriol. 2011 Oct;193(19):5260-70. doi: 10.1128/JB.00378-11. Epub 2011 Jul 29. PMID: 21804008

Nutrient-dependent, rapid transition of Vibrio cholerae to coccoid morphology and expression of the toxin co-regulated pilus in this form. Krebs SJ, Taylor RK. Microbiology. 2011 Oct;157(Pt 10):2942-53. doi: 10.1099/mic.0.048561-0. Epub 2011 Jul 21. PMID: 21778208

Crystal structure of the Vibrio cholerae colonization factor TcpF and identification of a functional immunogenic site. Megli CJ, Yuen AS, Kolappan S, Richardson MR, Dharmasena MN, Krebs SJ, Taylor RK, Craig L. J Mol Biol. 2011 Jun 3;409(2):146-58. doi: 10.1016/j.jmb.2011.03.027. Epub 2011 Apr 1. PMID: 21440558

Preparing DNA libraries for multiplexed paired-end deep sequencing for Illumina GA sequencers. Son MS, Taylor RK. Curr Protoc Microbiol. 2011 Feb;Chapter 1:Unit 1E.4. doi: 10.1002/9780471729259.mc01e04s20. PMID: 21400673

H-NS binding and repression of the ctx promoter in Vibrio cholerae. Stonehouse EA, Hulbert RR, Nye MB, Skorupski K, Taylor RK. J Bacteriol. 2011 Feb;193(4):979-88. doi: 10.1128/JB.01343-09. Epub 2010 Dec 17. PMID: 21169492

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Hannah ter Hofstede

ter Hofstede HM, Goerlitz HR, Ratcliffe JM, Holderied MW, Surlykke A (2013) The simple ears of moths are tuned to the calls of their sympatric bat community. J Exp Biol, doi: 10.1242/jeb.093294.

ter Hofstede HM, Goerlitz HR, Montealegre-Z F, Robert D, Holderied MW (2011) Tympanal mechanics and neural responses in the ears of a noctuid moth. Naturwissenschaften 98:1057-1061

Goerlitz HR, ter Hofstede HM, Zeale MRK, Jones G, Holderied MW (2010) An aerial-hawking bat uses stealth echolocation to counter moth hearing. Current Biology 20:1568-1572

ter Hofstede HM, Kalko EKV, Fullard J (2010) Auditory-based defence against gleaning bats in Neotropical katydids (Orthoptera: Tettigoniidae). J Comp Physiol A 196:349-358

ter Hofstede HM, Killow J, Fullard J (2009) Gleaning bat echolocation calls do not elicit antipredator behaviour in the Pacific field cricket, Teleogryllus oceanicus (Orthoptera: Gryllidae). J Comp Physiol A 195:769–776

ter Hofstede HM, Fullard JH (2008) The neuroethology of song cessation in response to gleaning bat calls in two species of katydids, Neoconocephalus ensiger and Amblycorypha oblongifolia. J Exp Biol 211:2431-2441

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Bernard L. Trumpower

Hunte, C., Palsdottir, H. and Trumpower, B. L. (2003) "Protonmotive Pathways and Mechanisms in the Cytochrome bc1 Complex," FEBS Letts. 545, 39-46

Kessl, J. J., Meshnick, S. R., and Trumpower, B. L. (2007) “Modeling the Molecular Basis of Atovaquone Resistance in Parasites and Pathogenic Fungi,” Trends in Parasitology, 23, 494-501

Covian, R. and Trumpower, B. L. (2008) “Regulatory Interactions in the Dimeric Cytochrome bc1 Complex: The Advantages of Being a Twin,” Biochim. Biophys. Acta, 1777, 1079-1091

Rottenberg, H., Covian, R. and Trumpower, B. L. (2009) “Membrane Potential Greatly Enhances Superoxide Generation by the Cytochrome bc1 Complex Reconstituted Into Phospholipid Vesicles,” J. Biol. Chem., 284, 19203-19210

Castellani, M., Covian,R.,Kleinschroth,T., Anderka, O., Ludwig, B. and Trumpower, B. L. (2010) “Direct Demonstration of Half-of-the-sites Reactivity in the Dimeric Cytochrome bc1 Complex,” J. Biol. Chem. 285, 502-510

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Samuel J. Vélez

Judd, K., Shugert, E. and Velez, S.J. (2007)Depressing Effects of Caffeine at Crayfish Neuromuscular Synapses. I. Dosage Response and Calcium Gradient Effects. J. Cellular and Molecular Neurobiol . 27: 367-380.

Celenza, K.M., Shugert, E. and Velez, S.J. (2007)Depressing Effects of Caffeine at Crayfish Neuromuscular Synapses. II. Initial Search for Possible Sites of Action. J. Cellular and Molecular Neurobiol . 27: 381-393.

Muniz, J. and Velez, S.J. (2009) Epicatechin effects on transmitter release under different calcium concentrations in crayfish neuromuscular junctions”. Society of Neuroscience Abstract CD-ROM 822.7.

Wilson, R. and Velez, S.J. (2010) Effect of a combined caffeine-ethanol solution on transmitter release in crayfish neuromuscular junctions”. Society of Neuroscience Abstract CD-ROM 549.4.

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Ross A. Virginia

Ball, B A and R A Virginia, Meltwater Seep Patches Increase Heterogeneity of Soil Geochemistry and Therefore Habitat Suitability, Geoderma , 189-190 (2012) 652-660

Levy L, M A Kelly, J A Howley, and R A Virginia, Age of the Ørkendalen Moraines, Kangerlussuaq, Greenland: Constraints on the Extent of the Southwestern Margin of the Greenland Ice Sheet during the Holocene, Quaternary Science Reviews , 52 (2012) 1-5

Holm, L K, L A Grenoble, and R A Virginia, A Praxis for Ethical Research and Scientific Conduct in Greenland, Études/Inuit/Studies , 35 (2011) 187-200

Virginia, R A, An Ecosystem Approach to Mountain Resorts in Mountain Resorts: Law and Ecology , J E Milne, J LaMense and R A Virginia (eds.) (2009) 24-38

Barrett, J E, R A Virginia, et al., “Persistent Effects of a Discrete Climate Event on a Polar Desert Ecosystem,” Global Change Biology , 14:10 (2008) 2249-2261.

Chapin, F S III, M Berman, T V Callaghan, et al., “Polar Systems,” in Ecosystems and Human Well-Being: Current State and Trends. The Millennium Ecosystem Assessment Series, Vol. 1 , R Hassan, R Scholes and N Ash (eds.), (2005) 717-743.

Brooks, R O, R T Jones, and R A Virginia, Law and Ecology: The Rise of the Ecosystem Regime , (2002).

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Lee Alan Witters

Hurley, RL, Barre, LK, Wood, SD, Anderson, KA, Kemp, BE, Means, AR and Witters, LA (2006), Regulation of AMP-activated protein kinase by multi-site phosphorylation in response to agents that elevate cellular cAMP, J. Biol. Chem. 281, 36662-36672,

Barre, L, Richardson, C, Hirshman, MF, Brozinick, Fiering, S, Kemp, BE, Goodyear, LJ and Witters, LA (2007) A genetic model for the chronic activation of skeletal muscle AMP-activated protein kinase leads to glycogen accumulation, Am J Physiol Endo Metab, 292, E802-811

Gleason, CE, Lu, D, Witters, LA, Newgard, CB and Birnbaum, MJ, (2007) The role of AMPK and mTOR in nutrient sensing in pancreatic β-cells, J. Biol. Chem., 282, 10341-103451

Roecki, KSC, Hirshman, MF, Brandauer, J, Fujii, N.. Witters, LA and Goodyear, LJ (2007), Skeletal Muscle Adaptation to Exercise Training AMP-Activated Protein Kinase Mediates Muscle Fiber Type Shift, Diabetes, 56, 2062-2069

Anderson, KA, Riber, T, Lin, F, Noeldner, P, Green, M, Murhlbauer, MJ, Witters LA, Kemp, BE and Means, AM (2008) A role for CaMKK2 in hypothalamic regulation of energy balance, Cell Metabolism, 7, 377-388

Folmes, KD, Witters LA, Allard, MF, Young ME and Dyck, JRB (2007) The AMPK gamma-1 R70Q mutant regulated multiple metabolic and growth pathways in the cardiac myocyte, Am J Physiol Heart Circ Physiol., 293(6):H3456-64

Vadasz, I, Dada, LA, Briva, A, C hen, J, Welch, LC, Diaz, I, Lecuona, E, Chandel, NS, Witters, LA, Seeger, W and Sznajder, JI (2008) AMP-activated protein kinase mediates the high CO2-induced alveolar epithelial dysfunction by down-regulating the Na,K-ATPase, J Clin Invest, 118(2):752-62

Ho, RC, Fujii, N, Witters, La, Hirshman, MF and Goodyear, LJ (2007) Dissociation of AMP-activated protein kinase and p38 mitogen-activated protein kinase signaling in skeletal muscle, Biochem Biophys Res Comm, 362(2):354-9

Iseli, TJ, Oakhill, JS, Bailey, MF, Wee, S, Walter, M, van Denderen, BJ, Castelli, LA, Katsis, F, Witters, LA, Stapeton, D, Macauley, SL, Mickhell, BJ and Kemp, BE (2008) AMPK subunit interactions: β1 Thr-263 and Tyr-267 are required for β1:γ1 association, J Biol Chem, 283(8):4799-807

Witters, LA (2008) A Diligent Effort, Dartmouth Medicine, 32, 52-65

Witters, LA, Luciano, M, Williams, C and Yang, J (2008), Diabetes Detective, Dartmouth Medicine, 33, 36-41

Gusarova, GA, Dada, LA, Kelly, A, Brodie, C, Witters, LA and Sznajder, JI (2009) α-1-AMP-activated protein kinase (AMPK) regulates hypoxia-induced NaK-ATPase encocytosis via direct phosphorylation of PKCζ, Mol Cell Biol, 29, 3455-3464

Joly, E, Roduit, R, Peyot, M-L, Habinowski, SA, Ruderman, N, Witters, LA and Prentki, M (2009) Glucose represses peroxisome proliferator-activated receptor α gene expression via AMP-activated protein kinase but not via p38 mitogen-activated protein kinase in the pancreatic β-cell, J Diabetes, 1. 263-272

Baumrin, E, Corbett, W, Kulkarni, A and Witters LA (2009) The most unspeakable terror, Dartmouth Medicine, 34, 44-57

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Olga Zhaxybayeva

Olga Zhaxybayeva, Ramunas Stepanauskas, Nikhil R. Mohan, and R. ThanePapke: "Cell sorting analysis of geographically separated hypersalineenvironments", Extremophiles, 2013, 17: 265-75.

Olga Zhaxybayeva, Kristen S. Swithers, Julia Foght, Anna Green, BrittanyHeld, David Bruce, ChrisDetter, Shunsheng Han, Hazuki Teshima, James Han, Tanja Woyke, SamPitluck, Len Pennacchio, MattNolan, Natalia Ivanova, Amrita Pati, Miriam L. Land, Marlena Dlutek, W.Ford Doolittle, Kenneth M.Noll and Camilla L. Nesbø: “Genome sequence of the mesophilicThermotogales bacterium Mesotogaprima MesG1.Ag.4.2 reveals largest Thermotogales genome to-date”, GenomeBiology and Evolution,2012, 4: 700-708.

Andrew S. Lang, Olga Zhaxybayeva, and J. Thomas Beatty: “Gene TransferAgents: phage-likeelements of genetic exchange”, Nature Reviews in Microbiology, 2012, 10:472-482

Olga Zhaxybayeva and W. Ford Doolittle: “Lateral Gene Transfer. APrimer”, Current Biology, 2011,21: R242-6.

W. Ford Doolittle and Olga Zhaxybayeva: “Metagenomics and the units ofbiological organization”,BioScience, 2010, 60: 102-112.

W. Ford Doolittle and Olga Zhaxybayeva: On the origin of prokaryoticspecies, Genome Research2009, 19:744-56.

Olga Zhaxybayeva, Kristen Swithers, Pascal Lapierre, Greg Fournier,Derek Bickhard, Robert T.DeBoy, Karen E. Nelson, Camilla L. Nesbø, W. Ford Doolittle, J. PeterGogarten and Kenneth M. Noll:“On the Chimeric Nature, Thermophilic Origin and Phylogenetic Placementof the Thermotogales”, ProcNatl Acad Sci USA, 2009, 106:5865-70.

Adrian K. Sharma, Olga Zhaxybayeva, R. Thane Papke and W.Ford Doolittle:“Actinorhodopsins:proteorhodopsin-like gene sequences found predominantly in non-marineenvironments", EnvironmentalMicrobiology, 2008, 10: 1039–1056.

R. Thane Papke, Olga Zhaxybayeva, Edward Feil, Katrin Sommerfeld, DeniseMuise, W. FordDoolittle: “Searching for species in haloarchaea”, Proc Natl Acad SciUSA, 2007, 104: 14092-14097

Olga Zhaxybayeva, J. Peter Gogarten, Robert L. Charlebois, W. FordDoolittle and R. Thane Papke:“Phylogenetic Analyses of Cyanobacterial Genomes: Quantification ofHorizontal Gene Transfer Events”, Genome Research, 2006, 16:1099-1108.

Olga Zhaxybayeva, Pascal Lapierre and J. Peter Gogarten: “GenomeMosaicism and OrganismalLineages”, Trends in Genetics 2004, 20(5): 254-260.

Olga Zhaxybayeva and J. Peter Gogarten: “Cladogenesis, Coalescence andthe Evolution of the ThreeDomains of Life”, Trends in Genetics 2004, 20(4): 182-187.

Raymond, J., Zhaxybayeva, O., Gogarten, J.P., Gerdes, S., Blankenship,R.E.: “Whole Genome Analysis of Photosynthetic Prokaryotes”. Science2002, 298: 1616-1620.

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