Selected Publications

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Matthew P. Ayres

Weed, A.S., M.P. Ayres, and J.A. Hicke. 2013. Consequences of climate change for biotic disturbances in North American forests. Ecological Monographs, in press

Martinson, S. J., T. Ylioja, B. T. Sullivan, R. F. Billings, and M. P. Ayres. 2013. Alternate attractors in the population dynamics of a tree-killing bark beetle. Population Ecology 55:95-106.

Valtonen, A., F. Molleman, C.A. Chapman, J.R. Carey, M.P. Ayres, and H. Roininen. 2013. Tropical phenology: bi-annual rhythms and interannual variation in an Afrotropical butterfly assemblage. Ecography, in press.

Marini, L., M. P. Ayres, A. Battisti, and M. Faccoli. 2012. Climate affects severity and altitudinal distribution of outbreaks in an eruptive bark beetle. Climatic Change 115:327-341.

Shi, Peijan, Bo Wang, MP Ayres, Feng Gea, Ling Zhong, and Bai-Lian Li. 2012. Influence of temperature on the northern distribution limits of Scirpophaga incertulas Walker (Lepidoptera: Pyralidae) in China. Journal of Thermal Biology 37:130-137.

Garnas, JR., DR Houston, MP Ayres, and C. Evans. 2011. Disease ontogeny overshadows effects of climate and species interactions on population dynamics in a nonnative forest disease complex. Ecography 34: 1-10.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Garnas, JR., MP Ayres, AM Liebhold, and C Evans. 2011. Subcontinental impacts of an invasive tree disease on forest structure and dynamics. Journal of Ecology 99: 532-541.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Valtonen, A, MP Ayres, H Roininen, J Pöyry and R Leinonen. 2011. Environmental controls on the phenology of moths - predicting plasticity and constraint under climate change. Oecologia 165: 237-248.

Seppälä, R., A. Buck, and P. Katila. (eds.). 2009. Adaptation of Forests and People to Climate Change: A Global Assessment Report. International Union of Forest Research Organizations, Helsinki. IUFRO World Series Volume 22. 224 p.

Lombardero, M.J., P. Vázquez-Mejuto, and M.P. Ayres. 2008. Role of plant enemies in the forestry of indigenous versus nonindigenous pines. Ecological Applications 18: 1171-1181.

Martinson, S.J., R.W. Hofstetter, and M.P.Ayres. 2007. Why does longleaf pine have low susceptibility to southern pine beetle? Canadian Journal of Forest Research 37: 1966–1977.

Friedenberg, N.A., J.A. Powell and M.P. Ayres. 2007 Synchrony's double edge: transient dynamics and the Allee effect in stage-structured populations. Ecology Letters 10: 564–573.

Tran , J.K., T. Ylioja, R. Billings, J. Régnière, and M.P. Ayres. 2007. Impact of minimum winter temperatures on the population dynamics of Dendroctonus frontalis (Coleoptera: Scolytinae)  Ecological Applications 17: 882-899.

Reynolds, L.V., M.P. Ayres, T.G. Siccama, and R.T. Holmes. 2007. Climatic effects on caterpillar fluctuations in northern hardwood forests. Canadian Journal of Forest Research 37: 481-491

Hofstetter, R.W., J.T. Cronin, K.D. Klepzig, J.C. Moser, and M.P. Ayres. 2006. Antagonisms, mutualisms and commensalisms affect outbreak dynamics of the southern pine beetle. Oecologia 147: 679-691.

Lombardero, M.J., M. P. Ayres, R. W. Hofstetter, J.C. Moser, and K.D. Klepzig. 2003. Strong indirect interactions of Tarsonemus mites (Acarina, Tarsonemidae) and Dendroctonus frontalis (Coleoptera:Scolytidae).Oikos 102: 243-252.

Lombardero, M.J., M.P. Ayres, P.L. Lorio, Jr., and J.J. Ruel. 2000. Environmental effects on constitutive and inducible resin defenses of loblolly pine.Ecology Letters 3:329-339.

Ayres, M.P., Wilkens, R.T., Ruel, J.J., M.J. Lombardero, and E. Vallery. 2000. Nitrogen budgets of phloem-feeding bark beetles with and without symbiotic fungi (Coleoptera: Scolytidae).Ecology 81:2198-2210.

Ruel, J. J., and M.P. Ayres. 1999. Jensen's inequality predicts effects of environmental variation. Trends in Ecology and Evolution 14:361-366.

Ayres, M. P., T. P. Clausen, S. F. MacLean, Jr., A. M. Redman, and P. B. Reichardt. 1997. Diversity of structure and anti-herbivore activity in condensed tannins.Ecology 78: 1696-1712.

Ayres, M.P., and J.M. Scriber. 1994. Local adaptation to regional climates in Papilio canadensis (Lepidoptera:Papilionidae).Ecological Monographs 64: 465-482.

Schamel, D., and M. P. Ayres. 1992. The "minds-on" approach: student creativity and personal involvement in the undergraduate science laboratory. Journal of College Science Teaching 21:226-229.

Ayres, M.P. and S.F. MacLean, Jr. 1987. Development of birch leaves and the growth energetics of Epirrita autumnata (Geometridae).Ecology 68:558-568.

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SEB

Sharon E. Bickel

Perkins, A.T., Das, T.M., Panzera, L.C. and Bickel, S.E.  (2016) Oxidative stress in oocytes during midprophase induces premature loss of cohesion and chromosome segregation errors.  PNAS. doi: 10.1073/pnas.1612047113.

Giauque, C.C. and Bickel, SE. (2016)  Heterochromatin-Associated Proteins HP1a and Piwi Collaborate to Maintain the Association of Achiasmate Homologs in Drosophila Oocytes. Genetics. May;203(1):173-89. doi: 10.1534/genetics.115.186460.

Weng, K.A., Jeffreys, C.A. and Bickel, S.E. (2014).  Rejuvenation of meiotic cohesion in oocytes during prophase I is required for chiasma maintenance and accurate chromosome segregation.  PLoS Genet. Sep 11;10(9):

Subramanian, V.V. and Bickel, S.E. (2009) Heterochromatin-mediated association of achiasmate homologues declines with age when cohesion is compromised. Genetics 181:1207-1218.

Subramanian, V.V. and Bickel, S.E. (2008) Aging predisposes oocytes to meiotic nondisjunction when the cohesin subunit Smc1 is reduced. PLoS Genet. Nov;4(11):e1000263. doi: 10.1371/journal.pgen.1000263.

Page, S.L., Khetani, R.S.,Lake, C.M., Nielsen, R.J., Jeffress J.K., Bickel, S.E., and Hawley, R.S. (2008) corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes . PLoS Genet 4(9): e1000194. doi: 10.1371/journal.pgen.1000194.

Gause, M., Webber, H., Misulovin, Z., Haller, G., Rollins, R.A., Eissenberg, J.C., Bickel, S.E. and Dorsett, D. (2008) Functional links between Drosophila Nipped-B and cohesin in somatic and meiotic cells. Chromosoma 17:51-66

Khetani, R. and Bickel, S.E. (2007) Regulation of cohesion and chromosome core morphogenesis during pachytene in Drosophila oocytes. Journal of Cell Science 120: 3123-3137.

Bickel, S E, “Aging (Not So) Gracefully,” Nature Genetics , 37 (2005) 1303-1304.

Webber, H., Howard, L. and Bickel S.E. (2004) The cohesion protein ORD is required for homolog bias during meiotic recombination. Journal of Cell Biology: 164:819-829.

Balicky, E.M., Young, L., Orr-Weaver, T.L. and Bickel, S.E. (2004) A proposed role for the Polycomb Group protein dRING in meiotic sister-chromatid cohesion. Chromosoma: 112:231-239.

Jeffreys, C.A, Burrage, P.S, and Bickel, S.E. (2003) A model system for increased meiotic nondisjunction in older oocytes. Current Biology 13:498-503.

Balicky, E.M., Endres, M.W. Lai, C, and Bickel, S.E. (2002) Meiotic cohesion requires accumulation of ORD on chromosomes prior to condensation. Mol. Biol. Cell 21:3890-3900.

Bickel, S.E., Orr-Weaver, T.L. and Balicky, E.M. (2002) The sister-chromatid cohesion protein ORD is required for chiasma maintenance in Drosophila oocytes. Current Biology 12:925-929.

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Douglas T. Bolger

Douglas Thomas Bolger

Morrison, T.A., and D.T. Bolger. 2014. Connectivity and bottlenecks in a migratory wildebeest population. Oryx. http://dx.doi.org/10.1017/S0030605313000537

Morrison, T.A., and D.T. Bolger. 2012. Seasonal range fidelity in a tropical migratory ungulate. Journal of Animal Ecology. 81: 543-552.

Bolger, D.T., T.A. Morrison, B. Vance, D. Lee, & H. Farid. 2012. A computer-assisted system for photographic mark–recapture analysis. Methods in Ecology and Evolution. 3:813-822.

Morrison, T.A., J. Yoshizaki, J.D. Nichols, D.T. Bolger. 2011. Estimating survival in photographic capture-recapture studies: overcoming misidentification error. In press, Methods in Ecology and Evolution.

Wolkovich, E.M., D. Lipson, R.A. Virginia, K. Cottingham, and D.T. Bolger. 2009. Grass invasion causes rapid increases in ecosystem carbon and nitrogen storage in a semi-arid shrubland. Global Change Biology. 16: 1351–1365.

Bolger, D.T., W.D. Newmark, T.A. Morrison and D.F. Doak. 2008. The need for integrative approaches to understand and conserve migratory ungulates. Ecology Letters, 11: 63-77.

Bolger, D.T. 2007. Spatial and temporal variation in the Argentine ant edge effect: Implications for the mechanism of edge limitation. Biological Conservation, 136:295-305.

Bolger, D T, M A Patten, and D C Bostock, “Avian Reproductive Failure in Response to an Extreme Climatic Event,” Oecologia 142:3 (January 2005) 398-406.

Lowe W.H., K.H. Nislow, and D.T. Bolger, 2004. Stage-specific and interactive effects of sedimentation and trout on a headwater stream salamander. Ecological Applications 14: 164-172.

Crooks, K., A. Suarez, and D.T. Bolger, 2004. Avian assemblages along a gradient of urbanization in a highly fragmented landscape. Biological Conservation 115: 451-462.

Patten, M.A. and D.T. Bolger. 2003. Variation in Top-down Control of Avian Reproductive Success Across a Fragmentation Gradient. Oikos 101:479-488.

Bolger, D.T. 2002. Fragmentation effects on birds in southern California: Contrast to the top-down paradigm. Studies in Avian Biology 25:141-157.

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Ryan Calsbeek

Ryan Calsbeek

Calsbeek, R and E Marnocha, “Context Dependent Neighbour Recognition in Anolis Sagrei : The Importance of Habitat Structure to Territory Defense,” Ethology , 112 (2006) 537-543.

Calsbeek, R, J H Knouft, and T B Smith, “Variation in Scale Numbers is Consistent with Ecologically Based Natural Selection Acting within and between Lizard Species,” Evolutionary Ecology , 20 (2006) 377-394.

Sinervo, B and R Calsbeek, “The Physiological, Behavioral, and Genetical Causes and Consequences of Frequency Dependent Selection in the Wild,” Annual Review of Ecology Evolution and Systematics 37 (2006) 581-610.

Sinervo, B, R Calsbeek, T Commendant, C Both, C Adamopoulou, and J Clobert, “Genetic and Maternal Determinants of Dispersal in Color Morphs of Side-blotched Lizards,” American Naturalist , 168 (2006) 88-89.

Sinervo, B, A Chaine, J Clobert, R Calsbeek, L Hazard, L Lancaster, A MacAdam, S Alonzo, G Corrigan, and M E Hochberg, “Color Morphs and Genetic Cycles of Greenbeard Altruism and Greenbeard Mutualism,” Proceedings of the National Academy of Sciences, U.S.A. , 103 (2006) 7372-7377.

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Celia Y. Chen

Dijkstra, J.A., K.L. Buckman, D. Ward, D.W. Evans, M. Dionne, C.Y. Chen. 2013. Experimental and natural warming elevates mercury concentrations in estuarine fish. PLOS ONE  8(3)e58401.

Schartup, A.T., R.P. Mason, P.H. Balcolm, T.A. Hollweg, C.Y. Chen. 2013. Methylmercury production in pristine and anthropogenically impacted sediments. Environmental Science and Technology  2013; 47:695-700. (PMCID in process)

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Schmitt, C.V., Serrell, N.S., and Sunderland, E.M. Sources to Seafood: Mercury Pollution in the Marine Environment. Hanover, NH: Toxic Metals Superfund Research Program, Dartmouth College 2012.

Driscoll, C.T., Chen, C.Y., Hammerschmidt, C.R., Mason, R.P., Gilmour, C.C., Sunderland, E.M., Greenfield, B.K., Buckman, K.L., Lamborg, C. H. 2012. Nutrient supply and mercury dynamics in marine ecosystems: A conceptual model. Environmental Research 119: 118-131.

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Serrell, N.S., and Sunderland, E.M.  2012. Marine mercury fate: From sources to seafood consumers. Environmental Research 119:1-2.

Glaholt, S.T., Chen, C.Y., Demidenko, E., Bugge, D.M., Folt, C. L., Shaw, J.R. 2012. Adaptive iterative design (AID): A novel approach for evaluating the effects of multiple stressor on aquatic organisms. Science of the Total Environment 432: 57-64. doi:10.1016/j.scitotenv.2012.05.074

Jackson, B.P., Bugge, D., Ranville, J.F., Chen, C.Y. 2012. Bioavailability toxicity, and Bioaccumulation of quantum dot nanoparticles to the amphipod Leptocheirus plumulosus. Environmental Science and Technology 46: 5550-5556.

Sunderland, E., Amirbahman, A., Burgess, N.M., Dalziel, J., Harding, G., Jones, S.H., Kamai, E., Karagas, M.R., Shi, X., Chen, C.Y. 2012. Mercury sources and fate in the Gulf of Maine. Environmental Research 119:27-41.

Brooks, R.T., Eggert, S.L., Nislow, K.H., Kolka, R.K., Chen, C.Y., Ward, D.M. 2012. Preliminary assessment of mercury accumulation in Massachusetts and Minnesota seasonal forest pools. Wetlands 32: 653-663. DOI 10.1007/s13157-012-0298-4.

Ward, D.M., Mayes, B, Sturup, S. Folt, C.L., Chen, C.Y. 2012. Assessing element-specific patterns of bioaccumulation across New England lakes. Science of the Total Environment 421-422: 230-237.

Chen, C.Y., Driscoll, C.T., Kamman, N.C. Mercury Hotspots in Freshwater Ecosystems: Drivers, Processes, and Patterns. 2012. In: Mercury in the Environment: Pattern and Process, (ed.) M. Bank, University of California Press, pp. 143-166.

Chen, C., Kamman, N., Williams, J., Bugge, D., Taylor, V., Jackson, B., Miller, E. 2012. Spatial and temporal variation in mercury bioaccumulation by zooplankton in Lake Champlain. Environmental Pollution 161: 343-349.

Miller, E.K., Chen, C., Kamman, N., Shanley, J., Chalmers, A., Jackson, B., Taylor, V., Smeltzer, E., Stangel, P., Shambaugh, A. 2011. Mercury in the pelagic food web of Lake Champlain. Ecotoxicology (in press) DOI 10.1007/s10646-011-0829-4.

Fisher, N.S. and Chen, C.Y. 2011. Interdisciplinary approaches for addressing marine contamination issues. Environmental Conservation 38: 187-198.

Williams, J.J., J. Dutton, C.Y. Chen, N.S. Fisher. 2010. Metal (As, Cd, Hg, and CH3Hg) bioaccumulation from water and food by the benthic amphipod Leptocheirus plumulosus. Environ. Toxicol. Chem. 29: 1755-1761.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2010. Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams. Environ. Sci. Techol. 44: 3245-3251.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2009. Rapid, efficient growth reduces mercury concentrations in stream-dwelling Atlantic salmon. Trans. Amer. Fish. Soc. 139:1-10. DOI: 10.1577/T09-032.1.

Chen, C.Y. 2009. China’s mercury problem: A sleeping giant? Woodrow Wilson International Center for Scholars. China Environment Series 2008/9 10:57-62.

Chen, C., Dionne, M., Mayes, B., Ward, D., Sturup, S., Jackson, B. 2009. Mercury bioavailability and bioaccumulation in estuarine food webs in the Gulf of Maine. Environ. Sci. Technol. 43: 1804-1810. DOI: 10.1021/es8017122.

Evers, D.C., Mason, R.P., Kamman, N.C., Chen, C.Y., Bogomolni, A.L., Taylor, D.L., Hammerschmidt, C.R., Jones, S.H., Burgess, N.M., Munney, K. Parson, K.C. 2008. An integrated mercury monitoring program for temperate estuarine and marine ecosystems on the North American Atlantic Coast. Ecohealth 5: 426-441. DOI: 10.1007/s10393-008-0205-x

Chen, C., Amirbahman, A., Fisher, N., Harding, G., Lamborg, C., Nacci, D., Taylor, D. 2008. Methylmercury in marine ecosystems: spatial patterns and processes of production, bioaccumulation, and biomagnification. Ecohealth 5: 399-408. DOI: 10.1007/s10393-008-0201-1.

Chen, C.Y., Serrell, N., Evers, D.C., Fleishman, B.J., Lambert, K.F., Weiss, J., Mason, R.P., Bank, M.S.  2008. Methylmercury in marine ecosystems: From sources to seafood consumers – A workshop report.  Environ. Health Perspectives 116: 1706-1712. DOI:10.1289/ehp.1121.

Chen, C.Y., Hathaway, K.M., Thompson, D.G., Folt, C.L. 2008. Multiple stressor effects of Release, pH, and food on the zooplankton, Simocephalus vetulus and larval amphibian, Rana pipiens. Ecotoxicol. and Environ. Safety 71: 209-218.

Chen, C.Y., Pickhardt, P.C., Xu, M.Q., Folt, C.L. 2008.  Mercury and arsenic bioaccumulation and eutrophication in Baiyandian Lake, China. Water, Air, Soil Poll. DOI 10.1007/s11270-007-9585-8.

Karimi, R., Chen C.Y., Fisher N.S., Pickhardt P.C., Folt C.L. 2007. Stoichiometric controls of mercury dilution by growth. Proceedings of the National Academy of Sciences 104:7477-7482.

Evers, D.C., Han, Y.J., Driscoll, C.T., Kamman, N.C., Goodale, M.W., Lambert, K.F., Holsen, T.M., Chen, C.Y., Clair, T.A., Butler, T. 2007. Identification and evaluation of biological hotspots of mercury in the Northeastern U.S. and Eastern Canada. Bioscience 57:29-43.

Driscoll, C.T., Han, Y.J., Chen, C.Y., Evers, D.C., Lambert, K.F., Holsen, T., Kamman, N.C., Munson, R. 2007. Mercury contamination in remote forest and aquatic ecosystems in the Northeastern U.S.: sources, transformations and management options. Bioscience 57:17-28.

Chen, C.Y., Stemberger, R.S., Kamman, N.C., Mayes, B.,M.,  Folt, C.L. 2005. Patterns of Hg bioaccumulation and transfer in aquatic food webs across multi-lake studies in the Northeast US. Ecotoxicology 14:135-147.

Chen, C.Y., Folt, C.L. 2005. High plankton biomass reduces mercury biomagnification. Environ. Sci. Technol. 39: 115-121.

Pickhardt, P.C., Folt, C.L., Chen, C.Y., Klaue, B. and Blum, J.D.  2002.  Algal blooms reduce the uptake of methylmercury in freshwater food webs.  Proceedings of the National Academy of Sciences 99: 4419-4423.

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Kathryn L. Cottingham

Cottingham, K.L., S.B. Fey, K.J. Fritschie, and J.V. Trout-Haney. 2017. Advancing ecosystem science by promoting greater use of theory and multiple research approaches in graduate education. Ecosystems 20:267-273. DOI 10.1007/s10021-016-0070-3

Carey, C.C., B.L. Brown, and K.L. Cottingham. 2017. Cyanobacterial blooms increase the stability and network complexity of phytoplankton communities. Ecosphere 8(7):e01830.  DOI 10.1002/ecs2.1830

Cubadda, F., B.P. Jackson, K.L. Cottingham, Y. Ornelas van Horne, and M. Kurzius-Spencer. 2017. Human exposure to dietary inorganic arsenic and other arsenic species: state of knowledge, gaps and uncertainties. Science of the Total Environment 579:1228-1239. DOI 10.1016/j.scitotenv.2016.11.108

Trout-Haney, J.V., Z.T. Wood and K.L. Cottingham. 2016. Presence of cyanotoxins in Arctic lakes of southwestern Greenland. Toxins 8(9), 256.  DOI 10.3390/toxins8090256

Wilson, R.S.,  D.J. Hardisty, R.S. Epanchin-Niell, M.C. Runge, K.L. Cottingham, D.L. Urban, L.A. Maguire, A. Hastings, P.J. Mumby, and D.P.C. Peters. 2016. A typology of timescale mismatches and behavioral interventions to diagnose and solve conservation problems. Conservation Biology 30(1):42-49. DOI 10.1111/cobi.12632

Karagas, M.R., T. Punshon, V. Sayarath, B.P. Jackson, C.L. Folt, and K.L. Cottingham. 2016. Rice and rice product consumption early in life and arsenic exposure. JAMA Pediatrics 170(6):609-616. DOI 10.1001/jamapediatrics.2016.0120

Carignan, C.C., K.L. Cottingham, B.P. Jackson, S.F. Farzan, A.J. Gandolfi, T. Punshon, C.L. Folt, and M.R. Karagas. 2015. Estimated exposure to arsenic in breastfed and formula-fed infants in a United States cohort. Environmental Health Perspectives 123(5):500-506. (* = co-first authors; ° = corresponding author)

Cottingham, K.L., H.A. Ewing, M.L. Greer, C.C. Carey, and K.C. Weathers. 2015. Cyanobacteria as drivers of lake nitrogen and phosphorus cycling. Ecosphere 6(1):1. Available at http://dx.doi.org/10.1890/ES14-00174.1.

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Michael Dietrich

Michael R. Dietrich

Michael R. Dietrich and Edna Suarez-Diaz, "History of Molecular Evolution," in Richard Kliman, Ed., Encyclopedia of Evolution, Volume 3 (Oxford: Academic Press, 2016), 55-60.

Michael R. Dietrich, “Experimenting with Sex:  Four Approaches to the Genetics of Sex Reversal before 1950,” History and Philosophy of the Life Sciences 38 (2016), 23-41.

Michael R. Dietrich, "Inaugurating the Everett Mendelsohn Prize," Journal of the History of Biology 49 (2016), 1-2.

Nathan Crowe, Michael R. Dietrich, Beverly Alomepe, Amelia Antrim, Bay Lauris ByrneSim, and Yi He, “The Diversification of Developmental Biology,” Studies in History and Philosophy of Biological and Biomedical Sciences  53 (2015), 1-15.

Michael R. Dietrich, “Explaining the “Pulse of Protoplasm”: The Search for Molecular Mechanisms of Protoplasmic Streaming,” Journal of Integrative Plant Biology 57 (2015): 14-22.

Michael R. Dietrich, Rachel Ankeny, Patrick Chen, “Publication Trends in Model  Organism Research, “ Genetics 198 (2014), 1-8.

Outsider Scientists: Routes to Innovation in Biology. Oren Harman and Michael R. Dietrich, Editors. (Chicago, IL: University of Chicago Press, 2013).

“Molecular Evolution” in The Philosophy of Biology: A Companion for Educators. Kostas Kampourakis, Editor, (Dordrecht: Springer Verlag, 2013), 239-248.

The Educated Eye: Visual Culture and Pedagogy in the Life Sciences. Nancy Anderson and Michael R. Dietrich, Editors. (Hanover, NH: University Press of New England, 2012).

Nancy Anderson and Michael R. Dietrich, “Visual Lessons and the Life Sciences ,” The Educated Eye: Visual Culture and Pedagogy in the Life Sciences, Nancy Anderson and Michael R. Dietrich, Editors. (Hanover, NH: University Press of New England, 2012), 1-13.

Robert A. Skipper, Jr. and Michael R. Dietrich, “Sewall Wright's Adaptive Landscape: Philosophical Reflections on Heuristic Value,” inThe Adaptive Landscape in Evolutionary Biology, Erik Svensson & Ryan Calsbeek, Editors. (Oxford: Oxford University Press, 2012), 3-15.

Michael R. Dietrich and Robert A. Skipper, Jr., “A Shifting Terrain: A Brief History of the Adaptive Landscape,” in The Adaptive Landscape in Evolutionary Biology, Erik Svensson & Ryan Calsbeek, Editors. (Oxford: Oxford University Press, 2012), 16-25.

"Editorial Introduction," Journal of the History of Biology 45 (2012), 1.

Book Review, "Manfred Laubichler and Gerd B. Mueller, Editors,Modeling Biology: Structures, Behaviors, Evolution," History and Philosophy of the LIfe Sciences 34 (2012), 503-504.

“Reinventing Richard Goldschmidt: Reputation, Memory, and Biography,” Journal of the History of Biology 44(2011), 693-712.

Book Review, “Beyond The Double Helix: A Review of Robert Olby’sFrancis Crick: Hunter of Life’s Secrets,” The Mendel Newsletter 18 (2010), 22-24. http://www.amphilsoc.org/library/mendel

Book Review, “Philip Thurtle, The Emergence of Genetic Rationality,”Journal of the History of Biology 43 (2010), 621-622.

Roberta L. Millstein, Robert A. Skipper, Jr., and Michael R. Dietrich, “(Mis)interpreting Mathematical Models of Drift: Drift as a Physical Process,” Philosophy and Theory in Biology 1:e002 (2009), 1-13. http://hdl.handle.net/2027/spo.6959004.0001.002

“Microevolution and Macroevolution Are Governed by the Same Processes” in Contemporary Debates in Philosophy of Biology. Francisco J. Ayala and Robert Arp, Editors. (Blackwell Publishing, 2009), 169-179.

Kevin J. Peterson, Michael R. Dietrich, and Mark A. McPeek, “miRNAs and Metazoan Macroevolution: Insights into Canalization, Complexity, and the Cambrian Explosion,” Bioessays 31 (2009), 736-747.

Gregory K. Davis, Michael R. Dietrich, and David Jacobs, "Homeotic Mutants and the Assimilation of Developmental Genetics into the Evolutionary Synthesis," in Joe Cain and Michael Ruse, Eds.,Descended from Darwin: Insights into American Evolutionary Studies, 1900-1970 (Philadelphia: American Philosophical Society, Transactions of the American Philosophical Society, volume 99, part 1, 2009), pp. 133-154.

“The Genetic Basis of Evolutionary Change,” Evolution: The First Four Billion Years. Michael Ruse and Joe Travis, Eds., (Cambridge, MA: Harvard University Press, 2009), pp. 602-603.

Book Review, "The Rise of the Classical Gene: Review of James Schwartz’ In Pursuit of the Gene,” Evolution and Development 11 (2009), 326-327.

Book Review, “Frederick Grinnell, Everyday Practice of Science: Where Intuition and passion Meet Objectivity and Logic,” The Quarterly Review of Biology 84 (2009), 278.

Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich,Editors. (New Haven, CT: Yale University Press, 2008).

Oren Harman and Michael R. Dietrich, “On Rebels, Icons, and the Value of Dissent” in Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich, Editors. (New Haven, CT: Yale University Press, 2008), pp. 1-19.

“Striking the Hornet’s Nest: Richard Goldschmidt’s Rejection of the Particulate Gene” in Rebels, Mavericks, and Heretics in Biology. Oren Harman and Michael R. Dietrich, Editors. (New Haven, CT: Yale University Press, 2008), pp. 119-136.

Oren Harman and Michael R. Dietrich, “Dynamic Dissent: Iconoclasts, both visionary and misguided, have advanced modern biology,“ The Chronicle Review 54 (July 11, 2008), B7-8.

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Patrick Dolph

Patrick Dolph

Roles of the Drosophila SK channel (dSK) in courtship memory. Abou Tayoun AN, Pikielny C, Dolph PJ. PLoS One. 2012;7(4):e34665. doi: 10.1371/journal.pone.0034665. Epub 2012 Apr 11. PMID: 22509342 [PubMed - indexed for MEDLINE]

Cathepsin proteases mediate photoreceptor cell degeneration in Drosophila. Kinser RD, Dolph PJ. Neurobiol Dis. 2012 Jun;46(3):655-62. doi: 10.1016/j.nbd.2012.03.004. Epub 2012 Mar 9. PMID: 22426392[Pu bMed - indexed for MEDLINE]

Gavin, B A, M J Dolph, N R Deleault, J C Geoghegan, V Khurana, M B Feany, P J Dolph, and S Supattapone, “Accelerated Accumulation of Misfolded Prion Protein and Spongiform Degeneration in a Drosophila Model of Gerstmann-Sträussler-Scheinker Syndrome,” The Journal of Neuroscience , 26:48 (November 2006) 12408-12414.

Alternative pathway of cell death in Drosophila mediated by NF-κB transcription factor Relish. Chinchore Y, Gerber GF, Dolph PJ. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E605-12. doi: 10.1073/pnas.1110666109. Epub 2012 Feb 10. PMID: 22328149 [PubMed - indexed for MEDLINE]

Characterization of two dominant alleles of the major rhodopsin-encoding gene ninaE in Drosophila. Mitra A, Chinchore Y, Kinser R, Dolph PJ. Mol Vis. 2011;17:3224-33. Epub 2011 Dec 14. PMID: 22194648 [PubMed - indexed for MEDLINE]

The Drosophila SK channel (dSK) contributes to photoreceptor performance by mediating sensitivity control at the first visual network. Abou Tayoun AN, Li X, Chu B, Hardie RC, Juusola M, Dolph PJ. J Neurosci. 2011 Sep 28;31(39):13897-910. doi: 10.1523/JNEUROSCI.3134-11.2011. PMID: 21957252 [PubMed - indexed for MEDLINE]

Cell-autonomous requirement for DNaseII in nonapoptotic cell death. Bass BP, Tanner EA, Mateos San Martín D, Blute T, Kinser RD, Dolph PJ, McCall K. Cell Death Differ. 2009 Oct;16(10):1362-71. doi: 10.1038/cdd.2009.79. Epub 2009 Jun 26. PMID: 19557011 [PubMed - indexed for MEDLINE]

Accumulation of rhodopsin in late endosomes triggers photoreceptor cell degeneration. Chinchore Y, Mitra A, Dolph PJ. PLoS Genet. 2009 Feb;5(2):e1000377. doi: 10.1371/journal.pgen.1000377. Epub 2009 Feb 13. PMID: 19214218 [PubMed - indexed for MEDLINE]

 

The role of carcinine in signaling at the Drosophila photoreceptor synapse. Gavin BA, Arruda SE, Dolph PJ. PLoS Genet. 2007 Dec;3(12):e206. PMID: 18069895 [PubMed - indexed for MEDLINE]

 

Accelerated accumulation of misfolded prion protein and spongiform degeneration in a Drosophila model of Gerstmann-Sträussler-Scheinker syndrome. Gavin BA, Dolph MJ, Deleault NR, Geoghegan JC, Khurana V, Feany MB, Dolph PJ, Supattapone S. J Neurosci. 2006 Nov 29;26(48):12408-14. PMID: 17135402 [PubMed - indexed for MEDLINE]

An essential role for endocytosis of rhodopsin through interaction of visual arrestin with the AP-2 adaptor. Orem NR, Xia L, Dolph PJ. J Cell Sci. 2006 Aug 1;119(Pt 15):3141-8. Epub 2006 Jul 11. PMID: 16835270 [PubMed - indexed for MEDLINE]

Molecular cloning of the pawn locus from Drosophila melanogaster. Arruda SE, Dolph PJ. Gene. 2003 May 22;310:169-73. PMID: 12801644 [PubMed - indexed for MEDLINE]

 

Post-transcriptional suppression of pathogenic prion protein expression in Drosophila neurons. Deleault NR, Dolph PJ, Feany MB, Cook ME, Nishina K, Harris DA, Supattapone S. J Neurochem. 2003 Jun;85(6):1614-23. PMID: 12787080

Epitope masking of rhabdomeric rhodopsin during endocytosis-induced retinal degeneration. Orem NR, Dolph PJ. Mol Vis. 2002 Dec 2;8:455-61. PMID: 12486400

Arrestin: roles in the life and death of retinal neurons. Dolph PJ. Neuroscientist. 2002 Aug;8(4):347-55. Review. PMID: 12194503

Orem, N R, and P J Dolph, “Loss of the Phospholipase C Gene Product Induces Massive Endocytosis of Rhodopsin and Arrestin in Drosophila Photoreceptors,” Vision Research , 42:4 (February 2002) 497-505.

The formation of stable rhodopsin-arrestin complexes induces apoptosis and photoreceptor cell degeneration. Alloway PG, Howard L, Dolph PJ. Neuron. 2000 Oct;28(1):129-38. PMID: 11086989

A role for the light-dependent phosphorylation of visual arrestin. Alloway PG, Dolph PJ. Proc Natl Acad Sci U S A. 1999 May 25;96(11):6072-7. PMID: 10339543

An eye-specific G beta subunit essential for termination of the phototransduction cascade. Dolph PJ, Man-Son-Hing H, Yarfitz S, Colley NJ, Deer JR, Spencer M, Hurley JB, Zuker CS. Nature. 1994 Jul 7;370(6484):59-61. PMID: 8015606

Arrestin function in inactivation of G protein-coupled receptor rhodopsin in vivo. Dolph PJ, Ranganathan R, Colley NJ, Hardy RW, Socolich M, Zuker CS. Science. 1993 Jun 25;260(5116):1910-6. PMID: 8316831

olation of a novel visual-system-specific arrestin: an in vivo substrate for light-dependent phosphorylation. LeVine H 3rd, Smith DP, Whitney M, Malicki DM, Dolph PJ, Smith GF, Burkhart W, Zuker CS. Mech Dev. 1990 Dec;33(1):19-25. PMID: 2129011

Translation by the adenovirus tripartite leader: elements which determine independence from cap-binding protein complex. Dolph PJ, Huang JT, Schneider RJ. J Virol. 1990 Jun;64(6):2669-77. Erratum in: J Virol 1990 Aug;64(8):4042. PMID: 1692346

 

Secondary structure analysis of adenovirus tripartite leader. Zhang Y, Dolph PJ, Schneider RJ. J Biol Chem. 1989 Jun 25;264(18):10679-84. PMID: 2732243

The adenovirus tripartite leader may eliminate the requirement for cap-binding protein complex during translation initiation. Dolph PJ, Racaniello V, Villamarin A, Palladino F, Schneider RJ. J Virol. 1988 Jun;62(6):2059-66. PMID: 2835510

Characterization of a gene cluster for exopolysaccharide biosynthesis and virulence in Erwinia stewartii. Dolph PJ, Majerczak DR, Coplin DL. J Bacteriol. 1988 Feb;170(2):865-71. PMID: 2828330

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Carol L. Folt

Ward, D M, K H Nislow, and C L Folt, Increased Population Density and Suppressed Prey Biomass: Relative Impacts on Juvenile Atlantic Salmon Growth, Transactions of the American Fisheries Society , 138:1 (2009) 135-143.

Chen, C Y, P C Pickhardt, M Q Xum, and C L Folt, “Mercury and Arsenic Bioaccumulation and Eutrophication in Baiyangdian Lake,” Water, AirandSoil Pollution , 190:1-4 (2008) 115-127.

Kennedy B P, K H Nislow, and C L Folt, “Linking Consumption Rates to Habitat, Growth and Survival of Juvenile Atlantic Salmon,” Ecology , 89:9 (2008) 2529-2541.

Ward, D M, K H Nislow, and C L Folt, “Do Native Species Limit Survival of Reintroduced Altantic Salmon in Historic Rearing Streams?” Biological Conservation , 141:1 (2008) 146-152.

Karimi, R, C Y Chen, N S Fisher, P C Pickhardt, and C L Folt, “Stoichiometric Controls of Mercury Dilution by Growth,” Proceedings of the National Academy of Sciences 104:18 (2007) 7477-7482.

Shaw, J R, J K Colbourne, J C Davey, S P Glaholt, T H Hampton, C Y Chen, C L Folt, and J W Hamilton, “Gene Response Profiles for Daphnia pulex Exposed to the Environmental Stressor Cadmium Reveals Novel Crustacean Metallothioneins,” BMC Genomics , 8:477 (2007).

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Andrew J. Friedland

Dean, C., J. Kirkpatrick and A.J. Friedland. 2017. Conventional intensive logging does not maintain soil organic carbon. Global Change Biology 23:1-11.

Richardson, J.B. and A.J. Friedland. 2016. Effect of coniferous and deciduous vegetation on major and trace metals in forests of northern New England, USA. Plant and Soil 402:363-378.

Petrenko, C.L., J. Bradley-Cook, E. Lacroix, A.J. Friedland and R.A. Virginia. 2016. Mineral soil carbon and nitrogen storage in graminoid- versus shrub-dominated soils of Western Greenland. Arctic Science 2:165-182. doi: 10.1139/AS-2015-0023.

Petrenko, C.L. and A.J. Friedland. 2015.  Mineral soil carbon pool responses to forest clearing in Northeastern hardwood forests. Global Change Biology-Bioenergy 7:1283-1293. doi: 10.1111/gcbb.12221

Richardson, J.B., J.H. Görres, B.P. Jackson and A.J. Friedland. 2015.Trace metals and metalloids in forest soils and exotic earthworms in northern New England, USA. Soil Biology and Biochemistry 85:190-198.

Richardson, J.B. and A.J. Friedland. 2015. Mercury in coniferous and deciduous upland forests in northern New England, USA: implications of climate change. Biogeosciences 12:6737-6749.

Friedland, A.J. and R. Relyea. Friedland and Relyea Environmental Science for AP*, Second Edition. New York: W.H. Freeman. 2015. 762 pages.

Vario, C.L., Neurath, R. and A.J. Friedland.  2014.  Response of mineral soil carbon to clear-cutting in a northern hardwood forest. Soil Science Society of America Journal 78:309-318.

Richardson, J.B., A.J. Friedland, J.M. Kaste, and B.P. Jackson.  2014.  Forest floor lead changes from 1980-2011 and accumulation in the mineral soil across the northeastern United States. Journal of Environmental Quality 43:926-935.

Buchholz, T., A. J. Friedland, C.E. Hornig, W.S. Keeton, G. Zanchi and J. Nunery. 2014.  Mineral soil carbon fluxes in forests and implications for carbon balance assessment. Global Change Biology-Bioenergy 6:305-311. DOI: 10.1111/gcbb.12044

Richardson, J.B., A.J. Friedland, J.M. Kaste, T.R. Engerbretson, and B.P. Jackson. 2013.  Spatial and vertical distribution of mercury in upland forest soils across the northeastern United States. Environmental Pollution 182:127-134. DOI: 10.1016/j.envpol.2013.07.011

Friedland, A.J., R. Relyea, and D. Courard-Hauri. Essentials of Environmental Science . New York: W.H. Freeman. 2012. 403 pages.

Zummo, L.M. and A.J. Friedland.  2011.  Soil carbon release along a gradient of physical disturbance in a harvested northern hardwood forest. Forest Ecology and Management 261:1016-1026.

Friedland, A.J. and K.T. Gillingham. 2010. Carbon accounting a tricky business (letter). Science 327:410-411.

Friedland, A.J., C.L. Folt, Writing Successful Science Proposals , Second Edition (2009). Yale University Press.

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John J. Gilbert

Gilbert, J.J. and M.A. McPeek. In press. Maternal age and spine development in a rotifer: ecological implications and evolution. Ecology.

Gilbert, J.J. 2013. The cost of predator-induced morphological defense in rotifers: experimental studies and synthesis. J. Plankton Res. 35: 461-472.

Gilbert, J.J. 2012. Predator-induced defense in rotifers: developmental lags for morph transformations, and effect on population growth. Aquatic Ecol. 46: 475-486.

Gilbert, J.J. 2012. Effects of an ostracod (Cypris pubera) on the rotifer Keratella tropica: predation and reduced spine development. Internat. Rev. Hydrobiol. 97: 445-453.

Gilbert, J.J. 2011. Temperature, kairomones, and phenotypic plasticity in the rotifer Keratella tropica (Apstein, 1907). Hydrobiologia 678: 179-190.

Gilbert, J.J. 2011. Induction of different defenses by two enemies in the rotifer Keratella tropica: response priority and sensitivity to enemy density. Freshwat. Biol. 56: 926-938.

Gilbert, J.J. 2010. Effect of food concentration on the production and viability of resting eggs of the rotifer Brachionus: implications for the timing of sexual reproduction. Freshwat. Biol. 55: 2437-2446

Gilbert, J.J. and M.C. Diéguez. 2010. Low crowding threshold for induction of sexual reproduction and diapause in a Patagonian rotifer. Freshwat. Biol. 55: 1705-1718.

Gilbert, J.J. 2009. Predator-specific inducible defenses in the rotifer Keratella tropica. Freshwat. Biol. 54: 1933-1946.

Schröder, T and J.J. Gilbert. 2009. Maternal age and spine development in the rotifer Brachionus calyciflorus: increase of spine length with birth order. Freshwat. Biol. 54: 1054-1065.

Gilbert, J.J. 2007. Timing of diapause in monogonont rotifers. In: Diapause in aquatic invertebrates: theory and human use (V. Alekseev, J. J. Gilbert and B. De Stasio, eds.). Springer, Dordrecht, The Netherlands. pp. 11-27.

Gilbert, J.J. 2007. Induction of mictic females in the rotifer Brachionus: oocytes of amictic females respond individually to population-density signal only during oogenesis shortly before oviposition. Freshwat. Biol. 52: 1417-1426.

Gilbert, J.J. and E.J. Walsh. 2005. Brachionus calyciflorus is a species complex: mating behavior and genetic differentiation among four geographically isolated strains. Hydrobiologia 546: 257-265.

Gilbert, J. J. and T. Schröder. 2004. Rotifers from diapausing, fertilized eggs: unique features and emergence. Limnol. Oceanogr. 49: 1341-1354.

Gilbert, J.J. 2004. Females from resting eggs and parthenogenetic eggs in the rotifer Brachionus calyciflorus: lipid droplets, starvation resistance and reproduction. Freshwat. Biol. 49: 1505-1515.

Schröder, T. and J.J. Gilbert. 2004. Transgenerational plasticity for sexual reproduction and diapause in the life cycle of monogonont rotifers: intraclonal, intraspecific and interspecific variation in the response to crowding. Functional Ecology 18: 458-466.

Gilbert, J.J. 2003. Environmental and endogenous control of sexuality in a rotifer life cycle: developmental and population biology. Evolution & Development 5: 19-24.

Diéguez, M.C. and J.J. Gilbert. 2003. Predation by Buenoa macrotibialis (Insecta, Hemiptera) on zooplankton: effect of light on selection and consumption of prey. J. Plankton Res. 25: 759-769.

Gilbert, J.J. and T. Schröder. 2003. The ciliate epibiont Epistylis pygmaeum: selection for zooplankton hosts, reproduction and effect on two rotifer hosts. Freshwat. Biol. 48: 878-893.

Gilbert, J.J. 2003. Specificity of crowding response that induces sexuality in the rotifer Brachionus. Limnol. Oceanogr. 48: 1297-1303.

Gilbert, J.J. 2002. Endogenous regulation of environmentally-induced sexuality in a rotifer: a multi-generational parental effect induced by fertilization. Freshwat. Biol. 47: 1633-1641.

Diéguez, M.C. and J.J. Gilbert. 2002. Suppression of the rotifer Polyarthra remata by the omnivorous copepod Tropocyclops extensus: predation or competition. J. Plankton Res. 24: 359-369.

Gilbert, J.J. 1999. Kairomone-induced morphological defenses in rotifers. In: The ecology and evolution of inducible defenses (R. Tollrian and C.D. Harvell, eds.). Princeton University Press. pp. 127-141.

Gilbert, J.J. 1988. Suppression of rotifer populations by Daphnia: a review of the evidence, the mechanisms, and the effects on zooplankton community structure. Limnol. Oceanogr. 33: 1286-1303.

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Amy S Gladfelter

Amy S. Gladfelter

Lee C, Occhipinti P, Gladfelter AS. PolyQ-dependent RNA-protein assemblies control symmetry breaking.J Cell Biol. 2015 Mar 2;208(5):533-44. doi: 10.1083/jcb.201407105. Epub 2015 Feb 23.PMID:25713414 [PubMed - in process]

Anderson CA, Roberts S, Zhang H, Kelly CM, Kendall A, Lee C, Gerstenberger J, Koenig AB, Kabeche R, Gladfelter AS. Ploidy variation in multinucleate cells changes under stress. Mol Biol Cell. 2015 Jan 28. pii: mbc.E14-09-1375. [Epub ahead of print] PMID: 25631818 [PubMed - as supplied by publisher]

Gladfelter, AS. Cytoskeleton: cirque du septins. Curr Biol. 2014 Jun 2;24(11):R526-8. doi: 10.1016/j.cub.2014.04.030.PMID: 24892914

Bridges AA, Gladfelter, AS. Fungal pathogens are platforms for discovering novel and conserved septin properties. Curr Opin Microbiol. 2014 Aug;20:42-8. doi: 10.1016/j.mib.2014.04.004. Epub 2014 May 28. PMID:24879478 [PubMed - in process]

Bridges AA, Zhang H, Mehta SB, Occhipinti P, Tani T, Gladfelter AS. Septin assemblies form by diffusion-driven annealing on membranes. Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2146-51. doi: 10.1073/pnas.1314138111. Epub 2014 Jan 27.PMID: 24469790[PubMed - indexed for MEDLINE]

Anderson CA, Eser U, Korndorf T, Borsuk ME, Skotheim JM, Gladfelter AS. Nuclear repulsion enables division autonomy in a single cytoplasm. Curr Biol. 2013 Oct 21;23(20):1999-2010. doi: 10.1016/j.cub.2013.07.076. Epub 2013 Oct 3.PMID:24094857[PubMed - in process]

Lee C, Zhang H, Baker AE, Occhipinti P, Borsuk ME, Gladfelter AS. Protein aggregation behavior regulates cyclin transcript localization and cell-cycle control. Dev Cell. 2013 Jun 24;25(6):572-84. doi: 10.1016/j.devcel.2013.05.007. Epub 2013 Jun 13. PMID:23769973 [PubMed - indexed for MEDLINE]

Meseroll RA, Occhipinti P, Gladfelter AS. Septin phosphorylation and coiled-coil domains function in cell and septin ring morphology in the filamentous fungus ashbya gossypii. Eukaryot Cell. 2013 Feb;12(2):182-93. doi: 10.1128/EC.00251-12. Epub 2012 Nov 30. PubMed PMID: 23204191; PubMed Central PMCID: PMC3571309.

Meseroll RA, Howard L, Gladfelter AS. Septin ring size scaling and dynamics require the coiled-coil region of Shs1p. Mol Biol Cell. 2012 Sep;23(17):3391-406. doi: 10.1091/mbc.E12-03-0207. Epub 2012 Jul 5. PubMed PMID: 22767579; PubMed Central PMCID: PMC3431940.

Gerstenberger JP, Occhipinti P, Gladfelter AS. Heterogeneity in mitochondrial morphology and membrane potential is independent of the nuclear division cycle in multinucleate fungal cells. Eukaryot Cell. 2012 Mar;11(3):353-67. doi: 10.1128/EC.05257-11. Epub 2012 Jan 20. PubMed PMID: 22267774; PubMed Central PMCID: PMC3294448.

Anker JF, Gladfelter AS. Axl2 integrates polarity establishment, maintenance, and environmental stress response in the filamentous fungus Ashbya gossypii. Eukaryot Cell. 2011 Dec;10(12):1679-93. doi: 10.1128/EC.05183-11. Epub 2011 Oct 7. PubMed PMID: 21984708; PubMed Central PMCID: PMC3232731.

Spiliotis ET, Gladfelter AS. Spatial guidance of cell asymmetry: septin GTPases show the way. Traffic. 2012 Feb;13(2):195-203. doi: 10.1111/j.1600-0854.2011.01268.x. Epub 2011 Sep 19. Review. PubMed PMID: 21883761; PubMed Central PMCID: PMC3245886.

DeMay BS, Noda N, Gladfelter AS, Oldenbourg R. Rapid and quantitative imaging of excitation polarized fluorescence reveals ordered septin dynamics in live yeast. Biophys J. 2011 Aug 17;101(4):985-94. doi: 10.1016/j.bpj.2011.07.008. PubMed PMID: 21843491; PubMed Central PMCID: PMC3175061.

DeMay BS, Bai X, Howard L, Occhipinti P, Meseroll RA, Spiliotis ET, Oldenbourg R, Gladfelter AS. Septin filaments exhibit a dynamic, paired organization that is conserved from yeast to mammals. J Cell Biol. 2011 Jun 13;193(6):1065-81. doi: 10.1083/jcb.201012143. PubMed PMID: 21670216; PubMed Central PMCID: PMC3115802.

Gladfelter AS. Guides to the final frontier of the cytoskeleton: septins in filamentous fungi. Curr Opin Microbiol. 2010 Dec;13(6):720-6. doi: 10.1016/j.mib.2010.09.012. Epub 2010 Oct 9. Review. PubMed PMID: 20934902.

Nair DR, D'Ausilio CA, Occhipinti P, Borsuk ME, Gladfelter AS. A conserved G₁ regulatory circuit promotes asynchronous behavior of nuclei sharing a common cytoplasm. Cell Cycle. 2010 Sep 15;9(18):3771-9. doi: 10.4161/cc.9.18.12999. Epub 2010 Sep 13. PubMed PMID: 20930528; PubMed Central PMCID: PMC3047801.

Chen CH, DeMay BS, Gladfelter AS, Dunlap JC, Loros JJ. Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16715-20. doi: 10.1073/pnas.1011190107. Epub 2010 Aug 23. PubMed PMID: 20733070; PubMed Central PMCID: PMC2944764.

DeMay BS, Meseroll RA, Occhipinti P, Gladfelter AS. Cellular requirements for the small molecule forchlorfenuron to stabilize the septin cytoskeleton. Cytoskeleton (Hoboken). 2010 Jun;67(6):383-99. doi: 10.1002/cm.20452. PubMed PMID: 20517926.

DeMay BS, Meseroll RA, Occhipinti P, Gladfelter AS. Regulation of distinct septin rings in a single cell by Elm1p and Gin4p kinases. Mol Biol Cell. 2009 Apr;20(8):2311-26. doi: 10.1091/mbc.E08-12-1169. Epub 2009 Feb 18. PubMed PMID: 19225152; PubMed Central PMCID: PMC2669037.

Gladfelter AS, Montagna C. Seeking truth on Monte Verita. Workshop on the molecular biology and biochemistry of septins and septin function. EMBO Rep. 2007 Dec;8(12):1120-6. Epub 2007 Nov 2. PubMed PMID: 17975554; PubMed Central PMCID: PMC2267226.

Sudbery PE, Gladfelter AS. Pathocycles. Fungal Genet Biol. 2008 Jan;45(1):1-5. Epub 2007 Feb 28. PubMed PMID: 17964832.

Gladfelter AS, Sustreanu N, Hungerbuehler AK, Voegeli S, Galati V, Philippsen P. The anaphase-promoting complex/cyclosome is required for anaphase progression in multinucleated Ashbya gossypii cells. Eukaryot Cell. 2007 Feb;6(2):182-97. Epub 2006 Dec 8. PubMed PMID: 17158735; PubMed Central PMCID: PMC1797942.

Hungerbuehler AK, Philippsen P, Gladfelter AS. Limited functional redundancy and oscillation of cyclins in multinucleated Ashbya gossypii fungal cells. Eukaryot Cell. 2007 Mar;6(3):473-86. Epub 2006 Nov 22. PubMed PMID: 17122387; PubMed Central PMCID: PMC1828934.

Gladfelter AS. Nuclear anarchy: asynchronous mitosis in multinucleated fungal hyphae. Curr Opin Microbiol. 2006 Dec;9(6):547-52. Epub 2006 Oct 11. Review. PubMed PMID: 17045513.

Helfer H, Gladfelter AS. AgSwe1p regulates mitosis in response to morphogenesis and nutrients in multinucleated Ashbya gossypii cells. Mol Biol Cell. 2006 Oct;17(10):4494-512. Epub 2006 Aug 9. PubMed PMID: 16899511; PubMed Central PMCID: PMC1635347.

Gladfelter AS, Hungerbuehler AK, Philippsen P. Asynchronous nuclear division cycles in multinucleated cells. J Cell Biol. 2006 Jan 30;172(3):347-62. PubMed PMID: 16449188; PubMed Central PMCID: PMC2063645.

Gladfelter AS. Control of filamentous fungal cell shape by septins and formins. Nat Rev Microbiol. 2006 Mar;4(3):223-9. Review. Erratum in: Nat Rev Microbiol. 2006 Apr;4(4):318. PubMed PMID: 16429163.

Gladfelter AS, Kozubowski L, Zyla TR, Lew DJ. Interplay between septin organization, cell cycle and cell shape in yeast. J Cell Sci. 2005 Apr 15;118(Pt 8):1617-28. Epub 2005 Mar 22. PubMed PMID: 15784684.

Gladfelter AS, Zyla TR, Lew DJ. Genetic interactions among regulators of septin organization. Eukaryot Cell. 2004 Aug;3(4):847-54. PubMed PMID: 15302817; PubMed Central PMCID: PMC500892.

Irazoqui JE, Gladfelter AS, Lew DJ. Cdc42p, GTP hydrolysis, and the cell's sense of direction. Cell Cycle. 2004 Jul;3(7):861-4. Epub 2004 Jul 26. Review. PubMed PMID: 15190213.

Irazoqui JE, Gladfelter AS, Lew DJ. Scaffold-mediated symmetry breaking by Cdc42p. Nat Cell Biol. 2003 Dec;5(12):1062-70. Epub 2003 Nov 16. PubMed PMID: 14625559.

Gladfelter AS, Bose I, Zyla TR, Bardes ES, Lew DJ. Septin ring assembly involves cycles of GTP loading and hydrolysis by Cdc42p. J Cell Biol. 2002 Jan 21;156(2):315-26. Epub 2002 Jan 21. PubMed PMID: 11807094; PubMed Central PMCID: PMC2199227.

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William R. Green

Green KA, Cook WJ, Green WR Myeloid-derived suppressor cells in murine retrovirus-induced AIDS inhibit T- and B-cell responses in vitro that are used to define the immunodeficiency. J Virol 2013 Feb; 87(4):2058-71 PMID: 23221564

Li W, Green WR Immunotherapy of murine retrovirus-induced acquired immunodeficiency by CD4 T regulatory cell depletion and PD-1 blockade. J Virol 2011 Dec; 85(24):13342-53 PMID: 21917983

Li W, Carlson TL, Green WR Stimulation-dependent induction of CD154 on a subset of CD4+ FoxP3+ T-regulatory cells. Int Immunopharmacol 2011 Sep; 11(9):1205-10 PMID: 21496498

Rutkowski MR, Stevens CA, Green WR Impaired memory CD8 T cell responses against an immunodominant retroviral cryptic epitope. Virology 2011 Apr 10; 412(2):256-68 PMID: 21295815

Carlson TL, Green KA, Green WR Alternative translational reading frames as a novel source of epitopes for an expanded CD8 T-cell repertoire: use of a retroviral system to assess the translational requirements for CTL recognition and lysis. Viral Immunol 2010 Dec; 23(6):577-83 PMID: 21142443

Rutkowski MR, Ho O, Green WR Defining the mechanism(s) of protection by cytolytic CD8 T cells against a cryptic epitope derived from a retroviral alternative reading frame. Virology 2009 Aug 1; 390(2):228-38 PMID: 19539970

Green KA, Okazaki T, Honjo T, Cook WJ, Green WR The programmed death-1 and interleukin-10 pathways play a down-modulatory role in LP-BM5 retrovirus-induced murine immunodeficiency syndrome. J Virol 2008 Mar; 82(5):2456-69 PMID: 18094175

Ho O, Green WR Alternative translational products and cryptic T cell epitopes: expecting the unexpected. J Immunol 2006 Dec 15; 177(12):8283-9 PMID: 17142722

Li W, Green WR Murine AIDS requires CD154/CD40L expression by the CD4 T cells that mediate retrovirus-induced disease: Is CD4 T cell receptor ligation needed? Virology 2007 Mar 30; 360(1):58-71 PMID: 17113120

Rich RF, Green WR Apoptosis of epitope-specific antiretroviral cytotoxic T lymphocytes via Fas ligand-Fas interactions. Viral Immunol 2006 Summer; 19(3):424-33 PMID: 16987061

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Erik Griffin

Erik Griffin

Wu Y, Griffin EE (2016) Regulation of Cell Polarity by PAR-1/MARK Kinase. Current Topics in Developmental Biology, 123:365-397.

Wu Y, Zhang H, Griffin EE (2015) Coupling between cytoplasmic concentration gradients through local control of protein mobility in the Caenorhabditis elegans zygote. Molecular Biology of the Cell, 26:2963-2970. 

Griffin EE (2015) Cytoplasmic localization and asymmetric division in the early embryo of Caenorhabditis elegans.Wiley Interdisciplinary Reviews: Developmental Biology, 4: 267-282.

Griffin EE, Odde DJ, Seydoux G (2011) Regulation of the MEX-5 gradient by a spatially separated kinase/phosphatase cycle. Cell , Vol 146: 955-968.

Motegi F, Zonies S, Hao Y, Cuenca AA, Griffin EE, Seydoux G (2011)  Microtubules induce self-organization of polarized PAR domains in Caenorhabditis elegans zygotes. Nature Cell Biology, Published online October 9, 2011.

Griffin EE, Chan DC (2006) Domain interactions within Fzo1 oligomers are essential for mitochondrial fusion.  Journal of Biological Chemistry, 281: 16599-16606.

Griffin EE, Detmer SA, Chan DC (2006) Molecular mechanism of mitochondrial fusion.  Biochimica et Biophysica Acta - Molecular Cell Reviews, 1763:482-489.

Griffin EE, Graumann J, Chan DC (2005) The WD40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondria.  Journal of Cell Biology, 170: 237-248.

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Gevorg Grigoryan

"Tertiary Structural Propensities Reveal Fundamental Sequence/Structure Relationships", F. Zheng, J. Zhang, G. GrigoryanStructure23(5): 961-971, 2015 [DOI].

"Structure-based design of combinatorial mutagenesis libraries", D. Verma, G. Grigoryan, C. Bailey-Kellogg, Protein Science24(5): 895-908, 2015 [DOI].

"Computational Design and Experimental Characterization of Peptides Intended for pH-Dependent Membrane Insertion and Pore Formation", Y. Zhang, R. Bartz, G. Grigoryan, M. Bryant, J. Aaronson, S. Beck, N. Innocent, L. Klein, W. Procopio, T. Tucker, V. Jadhav, D. M. Tellers, William F. DeGrado, ACS Chemical Biology10(4): 1082-1093, 2015 [DOI].

"Computational Design of Selective Peptides to Discriminate Between Similar PDZ Domains in an Oncogenic Pathway", F. Zheng, H. Jewell, J. Fitzpatrick, J. Zhang, D. F. Mierke, G. GrigoryanJournal of Molecular Biology427: 491-510, 2015 [DOI].

"De novo design of a transmembrane Zn2+ transporting four-helix bundle", N. H. Joh, T. Wang, M. P. Bhate, R. Acharya, Y. Wu, M. Grabe, M. Hong, G. Grigoryan, W. F. DeGrado, Science, 346(6216): 1520-1524, 2014 [DOI].

"Rapid Search for Tertiary Fragments Reveals Protein Sequence-Structure Relationships", J. Zhou, G. Grigoryan, Protein Science, [DOI] in press.

"Computational Design of Selective Peptides to Discriminate Between Similar PDZ Domains in an Oncogenic Pathway", F. Zheng, H. Jewell, J. Fitzpatrick, J. Zhang, D. F. Mierke, G. Grigoryan*, Journal of Molecular Biology, 2014 [DOI].

"Design and Designability of Protein-based Assemblies", J. Zhang, F. Zheng, G. Grigoryan*, Current Opinion in Structural Biology, 27: 79-86, 2014 [DOI].

"Absolute Free Energies of Biomolecules from Unperturbed Ensembles", G. Grigoryan,Journal of Computational Chemistry34: 2726–2741, 2013 [DOI].

"Mining Tertiary Structural Motifs for Assessment of Designability", J. Zhang, G. Grigoryan, Methods in Enzymology, 523: 21-40, 2013 [DOI].

"Structural Informatics, Modeling and Design with an Open Source Molecular Software Library (MSL)", D. W. Kulp, S. Subramaniam, J. E. Donald, B. T. Hannigan, B. K. Mueller, G. Grigoryan, A. Senes, Journal of Computational Chemistry, 33(20): 1645-1661, 2012 [DOI].

"Capture and Imaging of a Prehairpin Fusion Intermediate of the Paramyxovirus PIV5", Y. H. Kim, J. E. Donald, G. Grigoryan, G. P. Leser, A. Y. Fadeev , R. A. Lamb, W. F. DeGrado, Proc. Natl. Acad. Sci. USA, 108(52): 20992-20997, 2011 [DOI].

"Computational Design of Virus-like Protein Assemblies on Carbon Nanotube Surfaces", G. Grigoryan, Y. H. Kim, R. Acharya, K. Axelrod, R. M. Jain, L. Willis, M. Drndic, J. M. Kikkawa, and W. F. DeGrado, Science, 332(6033): 1071-1076, 2011 [DOI].

"Transmembrane Communication: General Principles and Lessons from the Structure and Function of the M2 Proton Channel, K+ Channels, and Integrin Receptors", G. Grigoryan, D. T. Moore, and W. F. DeGrado, Annual Review of Biochemistry, 80: 211-237, 2011 [DOI].

"Probing Designability via a Generalized Model of Helical Bundle Geometry", G. Grigoryan and W. F. DeGrado, Journal of Molecular Biology, 405(4): 1079-1100, 2011 [PubMED] [DOI].

"Identifying and Reducing Error in Cluster Expansion Approximations of Protein Energies", S. Hahn, O. Ashenberg, G. Grigoryan, and A. E. Keating, Journal of Computational Chemistry, 31(16): 2900-2914, 2010 [PubMED] [DOI].

"Identification of bZIP Interaction Partners of Viral Proteins HBZ, MEQ, BZLF1, and K-bZIP Using Coiled-Coil Arrays", A. W. Reinke, G. Grigoryan, and A. E. Keating, Biochemistry, 49(9): 1985-1997, 2010 [PubMED] [DOI].

"Design of Protein-interaction Specificity Gives Selective bZIP-binding Peptides", G. Grigoryan, A. W. Reinke, and A. E. Keating, Nature, 458: 859-864, 2009 [PubMED] [DOI].

"Cluster-Expansion Models for Flexible-Backbone Protein Energetics", J. R. Apgar, S. Hahn, G. Grigoryan, and A. E. Keating, Journal of Computational Chemistry, 30(15): 2402-2413, 2009 [PubMED] [DOI].

"Structural Specificity in Coiled-coil Interactions", G. Grigoryan and A. E. Keating, Current Opinion in Structural Biology, 18(4): 477-483, 2008 [PubMED] [DOI].

"Modest Membrane Hydrogen Bonds Deliver Rich Results", G. Grigoryan and W. F. DeGrado, Nature Chemical Biology, 4: 393-394, 2008 [PubMED] [DOI].

"Computing van der Waals Energies in the Context of the Rotamer Approximation", G. Grigoryan, A. Ochoa, and A. E. Keating, Proteins: Structure, Function, and Bioinformatics, 68(4): 863-878, 2007 [PubMED] [DOI].

"Ultra-fast Evaluation of Protein Conformational Energies Directly from Sequence", G. Grigoryan, F. Zhou, S. R. Lustig, G. Ceder, D. Morgan and A. E. Keating, PLoS Computational Biology, 2(6): e63, 2006 [PubMED] [DOI].

"Structure-based Prediction of bZIP Partnering Specificity", G. Grigoryan and A. E. Keating, Journal of Molecular Biology, 355(5): 1125-1142, 2006 [PubMED] [DOI].

"Coarse-Graining Protein Energetics in Sequence Variables", F. Zhou, G. Grigoryan, S. R. Lustig, A. E. Keating, G. Ceder, and D. Morgan, Physical Review Letters, 95(14): 148103, 2005 [PubMED] [DOI].

"Design of a Heterospecific, Tetrameric, 21-Residue Miniprotein with Mixed alpha/beta Structure", M. H. Ali, C. M. Taylor, G. Grigoryan, K. N. Allen, B. Imperiali, and A. E. Keating, Structure, 13(2): 225-234, 2005 [PubMED] [DOI].

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Mary Lou Guerinot

Mary Lou Guerinot

Huang, X.Y., Deng, F., Yamaji, N., Pinson, S.R., Fujii-Kashino, M., Danku, J., Douglas, A., Guerinot, M.L., Salt, D.E., Ma, J.F. (2016) A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Nat Commun. 2016 Jul 8;7:12138. doi: 10.1038/ncomms12138. PMID:27387148

Mary, V., Schnell Ramos, M., Gillet, C., Socha, A.L., Giraudat, J., Agorio, A., Merlot, S., Clairet, C., Kim, S.A., Punshon, T,., Guerinot, M.L., Thomine, S.  (2015) Bypassing Iron Storage in Endodermal Vacuoles Rescues the Iron Mobilization Defect in the natural resistance associated-macrophage protein3natural resistance associated-macrophage protein4 Double Mutant. Plant Physiol. 2015 Sep;169(1):748-59. doi: 10.1104/pp.15.00380. Epub Jul 31. PMID: 26232490

Stanton, B.A., Caldwell, K., Congdon, C.B., Disney, J., Donahue, M., Ferguson, E., Flemings, E., Golden, M., Guerinot, M.L., Highman, J., James, K., Kim, C., Lantz, R.C., Marvinney, R.G., Mayer, G., Miller, D., Navas-Acien, A., Nordstrom, D.K., Postema, S., Rardin, L., Rosen, B., SenGupta, A., Shaw, J., Stanton, E., Susca, P. (2015) MDI Biological Laboratory Arsenic Summit: Approaches to Limiting Human Exposure to Arsenic. Curr Environ Health Rep. Sep;2(3):329-37. doi: 10.1007/s40572-015-0057-9. PMID: 26231509

Zhai, Z., Gayomba, S.R., Jung, H.I., Vimalakumari, N.K., Piñeros, M., Craft, E., Rutzke, M.A., Danku, J., Lahner, B., Punshon, T., Guerinot, M.L., Salt, D.E., Kochian, L.V., Vatamaniuk, O.K. (2014) OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis. Plant Cell. May 27;26(5):2249-2264. PMID: 24867923

Socha, A. and M.L. Guerinot. (2014)  Mn-euvering manganese: the role of transporter gene family members in manganese uptake and mobilization in plants.  Front. Plant Sci. 5:106. doi: 10.3389/fpls.2014.00106

Norton, G.J., Douglas, A., Lahner, B., Yakubova, E., Guerinot, M.L., Pinson, S.R., Tarpley, L., Eizenga, G.C., McGrath, S.P., Zhao, F.J., Islam, M.R., Islam, S., Duan, G., Zhu, Y., Salt, D.E., Meharg, A.A., Price, A.H. (2014) Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites. PLoS One. Feb 25;9(2):e89685. doi: 10.1371/journal.pone.0089685. eCollection. PMID: 24586963

Hong, S., S.A. Kim, M.L. Guerinot and C.R. McClung.  2013.  Reciprocal interaction of the circadian clock with the Fe homeostasis network in Arabidopsis thaliana.  Plant Physiol. 163: 893-903. PMCID: PMC3561027

Schroeder, J.I., E. Delhaize, W.B. Frommer, M.L. Guerinot, M.J. Harrison, L. Herrera-Estrella, T. Horie, L.V. Kochian, R. Munns, N.K. Nishizawa, Y.-F. Tsay and D. Sanders.  2013.  Using membrane transporters to improve crops for sustainable food production.  Nature 497: 60-66.

Hosmani, P.S., T. Kamiya, J. Danku S. Naseer, N. Geldner, M.L. Guerinot and D.E. Salt.  2013.   A dirigent-domain containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root.  Proc. Natl. Acad. Sci. U.S.A.  110:14498-503

Zhang, M, S.R.M. Pinson, L. Tarpley, X. Huang, B. Lahner, E. Yakubova, M.L. Guerinot, and D.E. Salt.  2013.  Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain.  Theor. Appl. Genet.  10.1007/s00122-013-2207-5

Palmer, C., M.N. Hindt, H. Schmidt, S. Clemens and M.L. Guerinot.  2013.  MYB10 and MYB72 Are required for growth under iron-limiting conditions.  PLoS Genet.  9(11):e1003953

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Richard T. Holmes

Richard Holmes

Holmes, R.T., and G. E. Likens. 2016. Hubbard Brook: The Story of a Forest Ecosystem. Yale University Press, New Haven. pp 1-270.

Townsend, A. K., E. G. Cooch, T. S. Sillett, N. L. Rodenhouse, R. T. Holmes, and M. S. Webster. 2016. Contrasting effects of warm springs and global climate cycles on population dynamics of a migratory songbird. Global Change Biology 22: 544-555 (doi: 10.1111/gcb.13053).

Marra, P. P., C. E. Studds, S. Wilson, T. S. Sillett, T. W. Sherry, and R. T. Holmes. 2015. Non-breeding season habitat quality mediates the strength of density-dependence for a migratory bird. 2015. Proceedings of the Royal Society London B 282, doi.org/10.1098/rspb.2015.0624.

Sherry, T.W., S. Wilson, S. Hunter, and R.T. Holmes. 2015. Impacts of nest predators and weather on reproductive success and population limitation in a long-distance migratory songbird. Journal of Avian Biology 46: 559- 569.

Lany, N.K., M. P. Ayres, E.E. Stange, T.S. Sillett, N.L. Rodenhouse, and R.T. Holmes. 2015. Breeding timed to maximize reproductive success for a migratory songbird: the importance of phenological asynchrony. Oikos, doi: 10.1111/oik.02412.

Townsend, A. K., T. S. Sillett, N. K. Lany, S. A. Kaiser, N. L. Rodenhouse, M.S. Webster, and R. T. Holmes. 2013.  Warm springs, early lay dates, and double-brooding in a North American migratory songbird, the Black-throated Blue Warbler.  PLoS One 8(4): e59467. doi:10.1371/ 

Swatantran, A., R. Dubayah, S. Goetz, M. Hofton, M. G. Betts, M. Sun, M. Simard, and R. T. Holmes.  2012. Mapping migratory bird prevalence using     remote sensing data fusion.  PLoS One 7(1): doi:10.1371/journal.pone.0028922

Holmes, R. T.  2011. Birds in forest ecosystems: long-term research on populations and community processes in the Hubbard Brook Experimental Forest.  Forest Ecology and Management 262: 20-32

Goetz, S. J., S. Steinberg, M. Betts, R. T. Holmes, P. Doran, R. Dubayah, and M. Hofton. 2010. Lidar remote sensing variables predict breeding habitat of a Neotropical migrant bird. Ecology 91: 1569-1576

Faaborg, J., R.T. Holmes, et al. 2010. Recent advances in understanding migration systems of New World landbirds. Ecological Monographs, 80:3-48

Rodenhouse N.L., S.N. Matthews, K.P. McFarland, J.D. Lambert, L.R. Iverson, A. Prasad, T.S. Sillett, and R.T. Holmes. 2008. Potential effects of climate change on birds of the Northeast. Mitig. Adapt. Strat. Global Change 13: 517-540

Betts, M.G., N.L. Rodenhouse, T.S. Sillett, P.J. Doran, and R.T. Holmes. 2008. Dynamic occiupancy models reveal within-breeding season movement up a habitat quality gradient by a migrant songbird. Ecography 31: 592-600

Holmes, R.T. 2007. Understanding population change in migratory songbirds: long-term and experimental studies of Neotropical migrants in breeding and wintering areas. Ibis 149 (S2): 2-13

Johnson, M.D., T.W. Sherry, R.T. Holmes, and P.P. Marra. 2006. Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology 20: 1433-1444

Nagy, L.R., and R.T. Holmes. 2005. Food limits annual fecundity of a migratory songbird: an experimental study. Ecology 86: 675-681

Sillett, T.S., N.L. Rodenhouse, and R.T. Holmes. 2004. Experimentally reducing neighbor density affects reproduction and behavior of a migratory songbird. Ecology 85: 2467-2477

Rodenhouse, N.L., T.S. Sillett, P.J. Doran, and R.T. Holmes. 2003. Multiple density-dependent mechanisms regulate a migratory bird population during the breeding season. Proc. Royal Society London B 270:2105-2110

Jones, J., P. J. Doran and R.T. Holmes. 2003. Climate and food synchronize regional forest bird abundances. Ecology 84: 3024-3032

Rubenstein, D.R., C. P. Chamberlain, R.T. Holmes, et al. 2002. Linking breeding and wintering ranges of a Neotropical migrant songbird using stable isotopes. Science 295:591-593

Sillett, T.S., and R.T. Holmes. 2002. Variation in survivorship of a migratory songbird throughout its annual cycle. Journal of Animal Ecology 71:296-308

McPeek, M.A., N.L. Rodenhouse, T.W. Sherry, and R.T. Holmes. 2001. Site dependent population regulation: population-level regulation without individual-level interactions. Oikos 94:417-424

Holmes, R.T., and T.W. Sherry. 2001. Thirty-year bird population trends in an unfragmented temperate deciduous forest: importance of habitat change. Auk 118:589-610

Sillett, T.S., R.T. Holmes, and T.W. Sherry. 2000. Impacts of a global climate cycle on population dynamics of a migratory songbird. Science 288: 2040-2042

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Hoppa_photo3.jpg

Michael B. Hoppa

Ariel, P., Hoppa, M.B., Ryan, T.A. (2012)  Intrinsic variability in Pv, RRP size, Ca(2+) channel repertoire, and presynaptic potentiation in individual synaptic boutons. Front Synaptic Neurosci. 2012;4:9.

Hoppa, M.B., Lana, B., Margas, W., Dolphin, A.C., Ryan, T.A. (2012) α2δ expression sets presynaptic calcium channel abundance and release probability. Nature. May 13;486(7401):122-5.

Hoppa, M.B., Jones, E., Karanauskaite, J., Ramracheya, R., Braun, M., Collins, S.C., Zhang, Q., Clark, A., Eliasson, L., Genoud, C., Macdonald, P.E., Monteith, A.G., Barg, S., Galvanovskis, J., Rorsman, P. (2012) Multivesicular exocytosis in rat pancreatic beta cells. Diabetologia. Apr;55(4):1001-12. doi: 10.1007/s00125-011-2400-5

Collins, S.C., Hoppa, M.B., Walker, J.N., Amisten, S., Abdulkhader, F., Bengtsson, M., Fearnside, J., Ramracheya, R., Toye, A.A., Zhang, Q., Clark, A., Gauguier, D., Rorsman, P. (2010) Progression of diet-induced diabetes in C57Bl6J mice involves functional dissociation of Ca2+ channels from secretory vesicles. Diabetes. May;59(5):1192-201.

Hoppa, M.B., Collins, S., Ramracheya, R., Hodson, L., Amisten, S., Zhang, Q., Johnson, P., Ashcroft, F.M., Rorsman, P. (2009) Chronic palmitate exposure inhibits insulin secretion by dissociation of Ca(2+) channels from secretory granules. Cell Metabolism. Dec;10(6):455-65.

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Tom Jack

Thomas P. Jack

Prunet, N., Yang, W., Das, P., Meyerowitz ,E.M., Jack, T.P. (2017) SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7166-7171. doi: 10.1073/pnas.1705977114. Epub 2017 Jun 20.

Brancaccio-Taras, L., Pape-Lindstrom, P. A., Peteroy-Kelly, M., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Cahill, M., Frey, G., Jack, T., Kelrick, M., Marley, K. E., Miller, K. G., Osgood, M. P., Romano, S. L. Uzman, J. A., Zhao. J. (2016).  The PULSE Vision & Change Rubrics: A valid and equitable tool to measure life sciences department transformation at all institution types. CBE-Life Sci. Ed. (accepted pending revision).

 Prunet, N., Jack, T. P., and Meyerowitz, E. M. (2016) Live confocal imaging of Arabidopsis flower buds. Dev Biol. 2016 Mar 15. pii: S0012-1606(16)30066-5. doi: 10.1016/j.ydbio.2016.03.018. [Epub ahead of print]

Prunet, N., Morel, P., Champelovier, P., Thierry, A.-M., Negrutiu, I., Jack, T., and Trehin, C.  (2015).  SQUINT promotes stem cell homeostasis and floral meristem termination in Arabidopsis through APETALA2 and CLAVATA signaling. J. Ex. Bot. 66, 6905-6916.

Pape-Lindstrom, P. A., Jack, T., Miller, K. G., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Awong-Taylor, J., Brancaccio-Taras, L., Marley, K. E., Osgood, M. P., Peteroy-Kelly, M.,  Romano, S. L. (2015). PULSE pilot certification results.  J. Microbiol. Ed. 16, 127-129.

Wellmer, F., Bowman, J. L., Davies, B., Ferrandiz, C., Fletcher J. C., Franks, R. G., Graciet, E., Gregis, V., Ito, T., Jack, T. P., Jiao, Y., Kater, M. M., Ma, H., Meyerowitz, E. M., Prunet, N., and Riechmann, J. L. (2014).  Flower Development: Open Questions and Future Directions.  In Methods in Molecular Biology - Flower Development:  Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 103-124.

Prunet, N. and Jack, T. (2014). Flower development in Arabidopsis – there’s more to it than learning your ABCs.  In Methods in Molecular Biology - Flower Development:  Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 3-33.

Gauthier, A., and Jack, T.  (2014).  The Professor and the instructional designer: a course design journey.  Transformations: Liberal Arts in the Digital Age.

Aguirre, K. M., Balser, T. C., Jack, T., Marley, K. E., Miller, K. G., Osgood, M. P., Pape-Lindstrom, P. A., and Romano, S. L.  (2013).  PULSE Vision & Change Rubrics.  CBE-Life Sciences Education 12, 579-581. (corresponding author).

Jacob, N., Lee-Brown, M., Allen, T., Gusky, S., and Jack, T.  (2013).  Catalysing educational transformation:  The PULSE Project.  GARNish Newsletter 20, 18-21.

Nag, A., and Jack, T. (2010).  Sculpting the flower: the role of miRNAs in flower development.  Current Topics Dev. Biol. 91, 349-378.

Nag, A., King. S., and Jack, T. (2009).  miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis.  Proc. Natl. Acad. Sci. USA 106, 22534-22539.

Swaminathan, K., Peterson, K., and Jack, T. (2008).  The plant B3 superfamily. Trends in Plant Science 13, 647-655. 

Piwarzyk, E., Yang, Y., and Jack, T. (2007).  The conserved C-terminal motifs of the Arabidopsis proteins AP3 and PI are dispensable for function. Plant Phys. 145, 1495-1505. (This work received a Faculty of 1000 citation)

Nag, A., Yang, Y., and Jack, T.  (2007).  DORNRÖSCHEN-LIKE, an AP2 gene, is necessary for stamen emergence in Arabidopsis. Plant Mol. Biol. 65, 219-232. (Work featured in cover photograph.)

Yang, Y and T Jack, Defining Subdomains of the K Domain Important for Protein-Protein Interactions of Plant MADS Proteins, Plant Molecular Biology , 55:1 (2004) 45-59.

Jack, T (2004) Molecular and Genetic Mechanisms of Floral Control, The Plant Cell , 16 S1-S17.

Yang, Y, H Xiang, and T Jack, pistillata-5 , an Arabidopsis B class mutant with strong defects in petal but not in stamen development, Plant Journal , (2003) 33 177-188.

Yang, Y, L Fanning, and T Jack, The K domain mediates heterodimerization of the Arabidopsis floral organ identity proteins, APETALA3 and PISTILLATA,  Plant Journal , 33 (2003) 47-60.

Jack, T, Flower Development,” Encyclopedia of Plant and Crop Science , R Goodman (ed.) (2003) 464-467.

Prunet, N., Yang, W., Das, P., Meyerowitz, E.M., and T.P. Jack. (2017) SUPERMAN prevents class b gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc. Natl. Acad. Sci. USA  doi: 10.1073/pnas.1705977114 (http://www.pnas.org/content/early/2017/06/19/1705977114)

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Anne R. Kapuscinski

Anne R. Kapuscinski

Sarker, P.K., A.R. Kapuscinski, A. Lanois, E. Livesey, and K. Bernhard, M. Coley. 2016. Towards sustainable aquafeeds: complete substitution of fish oil with marine microalga Schizochytrium sp. improves growth and fatty acid deposition in juvenile Nile tilapia (Oreochromis niloticus). PLOS ONE, http://dx.doi.org/10.1371/journal.pone.0156684.

Hart, D.D., J.L. Buizer, J.A. Foley, L.E. Gilbert, L.J. Graumlich, A.R. Kapuscsinski, et al.  2016. Mobilizing the power of higher education to tackle the grand challenge of sustainability: Lessons from novel initiatives.  Elementa: Science of the Anthropocene, DOI 10.12952/journal.elementa.000090

Sarker, P.K., M.M. Gamble, S. Kelson and A. R. Kapuscinski. 2015. Nile tilapia (Oreochromis niloticus) show high digestibility of lipid and fatty acids from marine Schizochytrium sp. and of protein and essential amino acids from freshwater Spirulina sp. feed ingredients. Aquaculture Nutrition: 11pp. DOI 10.1111/anu.12230

Gerst, M., M. Cox, K. Locke, M. Laser, and A.R. Kapuscinski. 2014. A taxonomic framework for assessing governance challenges and environmental effects of integrated food-energy systems. Environmental Science and Technology: 8 pp. & Suppl. Info. DOI 10.1021/es504090u

Kelson, S.J., A.R. Kapuscinski, D.M. Timmins, W.R. Ardren. 2014. Fine-scale genetic structure of brook trout in a dendritic stream network. Conservation Genetics doi:10.1007/s10592-014-0637-5

Kapuscinski, A.R. and F. Sundström. 2013. Comments on Docket No. FDA-2011-N-0899 Draft Environmental Assessment for AquAdvantage Salmon and Preliminary Finding of No Significant Impact, Dated 4 May 2012, Prepared by the Center for Veterinary Medicine, U.S. Food and Drug Administration, submitted to FDA docket April 19, 2013. 18 pp. (Comment tracking number 1jx-84va-msvp) .  PDF available here.

Johnson, K. A., G. Dana, N. R. Jordan, K. J. Draeger, A. Kapuscinski, L. K. Schmitt Olabisi and P. B. Reich 2012. Using participatory scenarios to stimulate social learning for collaborative sustainable development. Ecology and Society 17(2): 9.

Dana, G., A.R. Kapuscinski and J. Donaldson. 2012. Integrating diverse scientific and practitioner knowledge in ecological risk analysis: a case study of biodiversity risk assessment in South Africa. Journal of Environmental Management 98: 134-146.

Hill, J.E., A. R. Kapuscinski and T. Pavlowich. 2011. Fluorescent transgenic zebra danio more vulnerable to predators than wild-type. Transactions of the American Fisheries Society 140(4): 101-105.

Pennington, K. M. and A. R. Kapuscinski. 2011. Predation and food limitation influence fitness traits of growth-enhanced transgenic and wild-type fish. Transactions of the American Fisheries Society 140:221-234.

Schmitt-Olabisi, L., A.R. Kapuscinski, K. Johnson, P. Reich, B. Stenquist, and K. Draeger. 2010. Using scenario visioning and participatory system dynamics modeling to investigate the future: Lessons from Minnesota 2050. Sustainability 2(8):2686-2706. (Accessible at http://www.mdpi.com/2071-1050/2/8/2686

Cooper, A.M., Kapuscinski, A.R., and Miller, L.M. 2010. Conservation of population structure and genetic diversity under captive breeding of remnant coaster brook trout (Salvelinus fontinalis) populations. Conservation Genetics 11(3): 1087-1093.

Kapuscinski, A.R., K. Hayes, S. Li, and G. Dana, eds. 2007. Environmental Risk Assessment of Genetically Modified Organisms, Vol. 3: Methodologies for Transgenic Fish, CABI Publishing, UK. 304 pp.  PDF available here.

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Robert A. Maue

Robert A. Maue

Maue RA, Burgess RW, Wang B, Wooley CM, Seburn KL, Vanier MT, Rogers MA, Chang CC, Chang TY, Harris BT, Graber DJ, Penatti CA, Porter DM, Szwergold BS, Henderson LP, Totenhagen JW, Trouard TP, Borbon IA, Erickson RP. A novel mouse model of Niemann-Pick type C disease carrying a D1005G-Npc1 mutation comparable to commonly observed human mutations. Hum Mol Genet. 2012 Feb 15;21(4):730-50. (view details on MedLine)

Claudepierre T, Paques M, Simonutti M, Buard I, Sahel J, Maue RA, Picaud S, Pfrieger FW. Lack of Niemann-Pick type C1 induces age-related degeneration in the mouse retina. Mol Cell Neurosci. 2010 Jan;43(1):164-76. (view details on MedLine)

Fry M, Boegle AK, Maue RA. Differentiated pattern of sodium channel expression in dissociated Purkinje neurons maintained in long-term culture. J Neurochem. 2007 May;101(3):737-48. (view details on MedLine)

Maue RA. Understanding ion channel biology using epitope tags: progress, pitfalls, and promise. J Cell Physiol. 2007 Dec;213(3):618-25. Review. (view details on MedLine)

Paul CA, Reid PC, Boegle AK, Karten B, Zhang M, Jiang ZG, Franz D, Lin L, Chang TY, Vance JE, Blanchette-Mackie J, Maue RA. Adenovirus expressing an NPC1-GFP fusion gene corrects neuronal and nonneuronal defects associated with Niemann pick type C disease. J Neurosci Res. 2005 Sep 1;81(5):706-19. (view details on MedLine)

Paul CA, Boegle AK, Maue RA. Before the loss: neuronal dysfunction in Niemann-Pick Type C disease. Biochim Biophys Acta. 2004 Oct 11;1685(1-3):63-76. Review. (view details on MedLine)

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C. Robertson McClung

C. Robertson McClung

Yarkhunova,, Y., C.E. Edwards, B.E. Ewers, R.L. Baker, T.L. Aston, C.R. McClung, P. Lou & C. Weinig. 2016. Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa. New. Phytol. 210:133-144.

Salmela, M.J., K. Greenham, P. Lou, C.R. McClung, B.E. Ewers & C. Weinig. 2016. Variation in circadian rhythms is maintained among and within populations in Boechera stricta in Wyoming. Plant Cell Environ. 39: 1293-1303.

Greenham, K. & C.R. McClung. 2015. Integrating circadian dynamics with physiological processes in plants. Nature Rev. Genet. 16: 598-610.

Greenham, K., P. Lou, H. Farid, S.E. Remsen & C.R. McClung. 2015.  TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation.  Plant Methods 11:33.

Xie, Q., P. Lou, V. Hermand, R. Aman, H.J. Park, D.-J Yun, W.Y. Kim, M.J. Salmela, B.E. Ewers, C. Weinig, S.L. Khan*, D.L.P. Schaible*, & C.R. McClung. 2015. Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa. Proc. Natl. Acad. Sci. USA 112:3829-3834.

Gehan, M.A., K. Greenham, T.C. Mockler & C.R. McClung. 2015. Transcriptional networks – crops, clocks, and abiotic stress. Curr. Op. Plant Biol. 24: 39-46.

Xie, Q., P. Wang, X. Liu, L. Yuan, L. Wang, Y. Li, H. Xing, L. Zhi, Z. Yue, C. Zhao, C.R. McClung & X. Xu. 2014. LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator. Plant Cell 26:2843-2857.

Ng, D.W.-K., M. Miller, H.H. Yu, T.-Y. Huang, E.-D. Kim, J. Lu, Q. Xie, C.R. McClung & Z.J. Chen. 2014. A role for CHH methylation in the parent-of-origin effect on altered circadian rhythms and biomass heterosis in Arabidopsis intraspecific hybrids. Plant Cell 26:2430-2440.

Rosas, U., Mei, Y., Xie, Q., Banta, J., Zhou, R.W., Seufferheld, G., Gerard-Martinez, S., Chou, L., Bhambhra, N., Flowers, J., McClung, C.R., Hanzawa, Y., Purugganan, M.D. 2014. Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS. Nature Communications: 5:3561.

Zhang, C., Q. Xie, R.G. Anderson, G. Ng, N.C. Seitz, T. Peterson, C.R. McClung, J.M. McDowell, D. Kong, J.M. Kwak, & H. Lu. 2013. Crosstalk between the circadian clock and innate immunity in Arabidopsis. PLoS Pathogens 9: e1003370.

McClung, C.R. 2014. Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clock. F1000Prime Reports 6:2

Hong, S., S.A Kim, M.L. Guerinot, & C.R. McClung. 2013. Reciprocal interaction of the circadian clock with the Fe homeostasis network in Arabidopsis thaliana. Plant Physiology 161:893-903.

McClung, C.R. 2013. Beyond Arabidopsis: The circadian clock in non-model plant species. Seminars in Cell and Developmental Biology 24:430-436.

Lou, P., J. Wu, F. Cheng, L.G. Cressman, X. Wang & C.R. McClung.  2012.  Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa.  Plant Cell 24:2415-2426.

Wang, X., F. Wu, Q. Xie, H. Wang, Y. Wang, Y. Yue, O. Gahura, S. Ma, L. Liu, Y. Cao, Y. Jiao, F. Puta, C.R. McClung, X. Xu & L. Ma.  2012. SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell 24:3278-3295.

Lou, P., Q. Xie, X. Xu, C.E. Edwards, M.T. Brock, C. Weinig & C.R. McClung.  2011. Genetic architecture of the circadian clock and flowering time in Brassica rapa. Theoretical and Applied Genetics 123: 397-409.

Hong, S., H.-R. Song, K. Lutz, R.A. Kerstetter, T.P. Michael & C.R. McClung.  2010. Type II Protein Arginine Methyltransferase PRMT5 is required for circadian period determination in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 107: 21211-21216.

Salomé, P.A., D. Weigel & C.R. McClung.  2010. The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation. Plant Cell 22: 3650-3661.

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Mark Alan McPeek

Selected Works can be found at: http://www.enallagma.com

Test alt

George A. O'Toole

Sisti F, Ha DG, O'Toole GA, Hozbor D, Fernández J. Cyclic-di-GMP signalling regulates motility and biofilm formation in Bordetella bronchiseptica. Microbiology. 2013 May;159(Pt 5):869-79. doi: 10.1099/mic.0.064345-0. Epub 2013 Mar 8. PubMed PMID: 23475948.

Anderson GG, Kenney TF, Macleod DL, Henig NR, O'Toole GA. Eradication of Pseudomonas aeruginosa biofilms on cultured airway cells by a fosfomycin/tobramycin antibiotic combination. Pathog Dis. 2013 Feb;67(1):39-45. doi: 10.1111/2049-632X.12015. Epub 2013 Jan 10. PubMed PMID: 23620118.

Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL. Gut microbial colonisation in premature neonates predicts neonatal sepsis. Arch Dis Child Fetal Neonatal Ed. 2012 Nov;97(6):F456-62. doi: 10.1136/fetalneonatal-2011-301373. Epub 2012 May 6. PubMed PMID: 22562869.

Yu Q, Griffin EF, Moreau-Marquis S, Schwartzman JD, Stanton BA, O'Toole GA. In vitro evaluation of tobramycin and aztreonam versus Pseudomonas aeruginosa biofilms on cystic fibrosis-derived human airway epithelial cells. J Antimicrob Chemother. 2012 Nov;67(11):2673-81. doi: 10.1093/jac/dks296. Epub 2012 Jul 26. PubMed PMID: 22843834; PubMed Central PMCID: PMC3468082.

Cady KC, Bondy-Denomy J, Heussler GE, Davidson AR, O'Toole GA. The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J Bacteriol. 2012 Nov;194(21):5728-38. doi: 10.1128/JB.01184-12. Epub 2012 Aug 10. PubMed PMID: 22885297; PubMed Central PMCID: PMC3486085.

Ivanov IE, Boyd CD, Newell PD, Schwartz ME, Turnbull L, Johnson MS, Whitchurch CB, O'Toole GA, Camesano TA. Atomic force and super-resolution microscopy support a role for LapA as a cell-surface biofilm adhesin of Pseudomonas fluorescens. Res Microbiol. 2012 Nov-Dec;163(9-10):685-91. doi: 10.1016/j.resmic.2012.10.001. Epub 2012 Oct 9. PubMed PMID: 23064158; PubMed Central PMCID: PMC3518552.

Kuchma SL, Griffin EF, O'Toole GA. Minor pilins of the type IV pilus system participate in the negative regulation of swarming motility. J Bacteriol. 2012 Oct;194(19):5388-403. doi: 10.1128/JB.00899-12. Epub 2012 Aug 3. PubMed PMID: 22865844; PubMed Central PMCID: PMC3457191.

Ballok AE, Bahl CD, Dolben EL, Lindsay AK, St Laurent JD, Hogan DA, Madden DR, O'Toole GA. Epoxide-mediated CifR repression of cif gene expression utilizes two binding sites in Pseudomonas aeruginosa. J Bacteriol. 2012 Oct;194(19):5315-24. doi: 10.1128/JB.00984-12. Epub 2012 Jul 27. PubMed PMID: 22843844; PubMed Central PMCID: PMC3457200.

Hampton TH, Ballok AE, Bomberger JM, Rutkowski MR, Barnaby R, Coutermarsh B, Conejo-Garcia JR, O'Toole GA, Stanton BA. Does the F508-CFTR mutation induce a proinflammatory response in human airway epithelial cells? Am J Physiol Lung Cell Mol Physiol. 2012 Sep 15;303(6):L509-18. doi: 10.1152/ajplung.00226.2011. Epub 2012 Jul 20. PubMed PMID: 22821996; PubMed Central PMCID: PMC3468482.

Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, Morrison HG, Paster BJ, O'Toole GA. Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability. J Bacteriol. 2012 Sep;194(17):4709-17. doi: 10.1128/JB.00566-12. Epub 2012 Jun 29. PubMed PMID: 22753064; PubMed Central PMCID: PMC3415522.

Madan JC, Koestler DC, Stanton BA, Davidson L, Moulton LA, Housman ML, Moore JH, Guill MF, Morrison HG, Sogin ML, Hampton TH, Karagas MR, Palumbo PE, Foster JA, Hibberd PL, O'Toole GA. Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures. MBio. 2012 Aug 21;3(4). doi:pii: e00251-12. 10.1128/mBio.00251-12. Print 2012. PubMed PMID: 22911969; PubMed Central PMCID: PMC3428694.

Gifford AH, Moulton LA, Dorman DB, Olbina G, Westerman M, Parker HW, Stanton BA, O'Toole GA. Iron homeostasis during cystic fibrosis pulmonary exacerbation. Clin Transl Sci. 2012 Aug;5(4):368-73. doi: 10.1111/j.1752-8062.2012.00417.x. Epub 2012 Jun 1. PubMed PMID: 22883617; PubMed Central PMCID: PMC3419499.

Boyd CD, Chatterjee D, Sondermann H, O'Toole GA. LapG, required for modulating biofilm formation by Pseudomonas fluorescens Pf0-1, is a calcium-dependent protease. J Bacteriol. 2012 Aug;194(16):4406-14. doi: 10.1128/JB.00642-12. Epub 2012 Jun 15. PubMed PMID: 22707708; PubMed Central PMCID: PMC3416268.

Chatterjee D, Boyd CD, O'Toole GA, Sondermann H. Structural characterization of a conserved, calcium-dependent periplasmic protease from Legionella pneumophila. J Bacteriol. 2012 Aug;194(16):4415-25. doi: 10.1128/JB.00640-12. Epub 2012 Jun 15. PubMed PMID: 22707706; PubMed Central PMCID: PMC3416269.

O'Toole GA, Wathier M, Zegans ME, Shanks RM, Kowalski R, Grinstaff MW. Diphosphonium ionic liquids as broad-spectrum antimicrobial agents. Cornea. 2012 Jul;31(7):810-6. doi: 10.1097/ICO.0b013e31823f0a86. PubMed PMID: 22236790; PubMed Central PMCID: PMC3336019.

Twomey KB, O'Connell OJ, McCarthy Y, Dow JM, O'Toole GA, Plant BJ, Ryan RP. Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa. ISME J. 2012 May;6(5):939-50. doi: 10.1038/ismej.2011.167. Epub 2011 Dec 1. PubMed PMID: 22134647; PubMed Central PMCID: PMC3329111.

Mintzer MA, Dane EL, O'Toole GA, Grinstaff MW. Exploiting dendrimer multivalency to combat emerging and re-emerging infectious diseases. Mol Pharm. 2012 Mar 5;9(3):342-54. doi: 10.1021/mp2005033. Epub 2011 Dec 13. Review. PubMed PMID: 22126461.

Boyd CD, O'Toole GA. Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems. Annu Rev Cell Dev Biol. 2012;28:439-62. doi: 10.1146/annurev-cellbio-101011-155705. Review. PubMed PMID: 23057745.

Ha DG, Merritt JH, Hampton TH, Hodgkinson JT, Janecek M, Spring DR, Welch M, O'Toole GA. 2-Heptyl-4-quinolone, a precursor of the Pseudomonas quinolone signal molecule, modulates swarming motility in Pseudomonas aeruginosa. J Bacteriol. 2011 Dec;193(23):6770-80. doi: 10.1128/JB.05929-11. Epub 2011 Sep 30. PubMed PMID: 21965567; PubMed Central PMCID: PMC3232867.

Newell PD, Yoshioka S, Hvorecny KL, Monds RD, O'Toole GA. Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1. J Bacteriol. 2011 Sep;193(18):4685-98. doi: 10.1128/JB.05483-11. Epub 2011 Jul 15. PubMed PMID: 21764921; PubMed Central PMCID: PMC3165641.

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219_original.jpg

David Ross Peart

Landis, R M, and D R Peart, “Early Performance Predicts Canopy Attainment across Life Histories in Subalpine Forest Trees,” Ecology , 86 (2005) 63-72.

Fagan, M E, and D R Peart, “Impact of the Invasive Shrub Glossy Buckthorn (Rhamnus frangula L.) on Juvenile Recruitment by Canopy Trees,” Forest Ecology and Management , 194 (2004) 95-107.

Blundell, A G, and D R Peart, “Density Dependent Population Dynamics of a Dominant Rain Forest Canopy Tree,” Ecology , 85 (2004) 704-715.

Blundell, A G, and D R Peart, “Recruitment Failure Following Mast Fruiting in a Southeast Asian Dipterocarp Forest,” Journal of Tropical Ecology , 20 (2004) 229-231.

Zens, M S, and D R Peart, “Dealing with Death Data: Individual Hazards, Mortality and Bias,” Trends in Ecology and Evolution , 18 (2003) 366-373.

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Kevin J. Peterson

Kevin J. Peterson

Peterson, K. J., Su, Y.-H., Arnone, M. I., Swalla, B. J., and King, B. microRNAs support the monophyly of enteropneust hemichordates. (2013) Journal of Experimental Zoology (Molecular and Developmental Evolution) in press.

Laflamme, M., Darroch, S. A. F., Tweet, S. M., Peterson, K. J., Erwin, D. H. (2013). The end of the Ediacara biota: Extinction, biotic replacement, or Cheshire Cat? Gondwana Research 23, 558-573.

Robinson, J. M., Sperling, E. A., Bergum, B., Adamski, M., Nichols, S. A., Adamska, M., and Peterson, K. J. (2013). The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. Journal of Experimental Zoology (Molecular and Developmental Evolution) 320B 84-93.

Tarver, J. E., Donoghue, P. C. J., and Peterson, K. J. (2012). Do miRNAs have a deep evolutionary history? Bioessays 34, 857-866.

Erwin, D. H. Laflamme, M., Tweedt, S. M., Pisani, D., and Peterson, K. J. (2011). The Cambrian conundrum: Early divergence and later ecological success in the early history of animals. Science, 334, 1091-1097.

Campbell, L. I., Rota-Stabellli, O., Marchioro, T., Longhorn, S. J., Edgecombe, G. D., Telford, M. J., Philippe, H., Rebecchi, L., Peterson, K. J., and Pisani, D. (2011). MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest the velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences, USA 108, 15920-15924.

Anderson, B. M., Pisani, D., Miller, A. I., and Peterson, K. J. (2011). The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record. Geology 2011, 971-974.

Campo-Paysaa, F., Sémon, M., Cameron, R. A., Peterson, K. J., and Schubert, M. (2011). miRNA complements in deuterostomes: origin and evolution of miRNAs. Evolution & Development 13, 15-27.

Philippe, H., Brinkmann, H., Copley, R. R., Moroz, L. L., Nakano, H., Poustka, A. J., Wallberg, A., Peterson, K. J., and Telford, M. J. (2011). Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470, 255-258.

Sperling, E. A., Peterson, K. J., and LaFlamme, M. (2010). Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran ocean Geobiology 9, 24-33.

Hydra Genome Consortium (2010). The dynamic genome of Hydra. Nature 464, 592-596.

Rota-Stabellli, O., Campbell, L., Brinkmann, H., Edgecombe, G. D., Longhorn, S. J., Peterson, K. J., Pisani, D., Philippe, H., and Telford, M. (2010). A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings of the Royal Society of London B Biological Sciences 278, 298-306.

Heimberg, A. M., Cowper-Sal lari, R., Sémon, M., Donoghue, P. C. J., and Peterson, K. J. (2010). microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences, USA 107, 19379-19383.

Sperling, E. A., Robinson, J. M., Pisani, D., and Peterson, K. J. (2010). Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Mry missing Precambrian fossil record of siliceous-sponge spicules. Geobiology 8, 24-36.

Sperling, E. A., Vinther, J., Moy, V. N., Wheeler, B. M., Sémon, M., Briggs, D. E. G., and Peterson, K. J. (2009). MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings of the Royal Society of London B Biological Sciences 276, 4315-4322.

Sperling, E. A., Peterson, K. J., and Pisani, D. (2009). Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution 26, 2261-2274.

Peterson, K. J., Dietrich, M. R., and McPeek, M. A. (2009). MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 31, 736-747.

Wheeler, B. M., Heimberg, A. M., Moy, V. N., Sperling, E. A., Holstein, T. W., Heber, S., and Peterson, K. J. (2009). The deep evolution of metazoan microRNAs. Evolution & Development 11, 50-68.

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Caitlin Pries

Caitlin E. Hicks Pries

Refereed Journal Articles:

Hicks Pries C.E., Bird J.A., Castanha C., Hatton P.J., Torn M.S. 2017. Long term decomposition: The influence of litter type and soil horizon on retention of plant carbon and nitrogen in soils. Biogeochemistry 134 (1-2), 5-16.

Porras R.C., Hicks Pries C.E., McFarlane K.J., Torn M.S. 2017. Association with pedogenic iron and aluminum: Effects on soil organic matter storage and stability in temperate forest soils. Biogeochemistry 133 (3), 333-345.

Hicks Pries C.E., Castanha C., Porras R.C., Torn M.S. 2017. The whole-soil carbon flux in response to warming. Science 355 (6332), 1420-1423. DOI: 10.1126/science.aal1319

Hicks Pries, C.E., E.A.G. Schuur, S.M. Natali, K.G. Crummer. 2016. Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra. Nature Climate Change doi:10.1038/nclimate2830

Hicks Pries, C.E., R.S.P. Logtestijn, E.A.G. Schuur, S.M. Natali, J.H.C. Cornelissen, R. Aerts, E. Dorrepaal. 2015. Decadal warming causes a consistent and persistent shift from heterotrophic to autotrophic respiration in contrasting permafrost ecosystems. Global Change Biology 21 (12), 4508-4519 doi: 10.1111/gcb.13032

Torn, M.S., A. Chabbi, P. Crill, P.J. Hanson, I.A. Janssens, Y. Luo, C.H. Pries, C. Rumpel, M.W.I. Schmidt , J. Six, M. Schrumpf, and B. Zhu. 2015. A call for international soil experiment networks for studying, predicting, and managing global change impacts. SOIL 1, 575-582 doi:10.5194/soil-1-575-2015

Natali, S.M., E.A.G. Schuur, E. E. Webb, C.E. Hicks Pries, K.G. Crummer. 2014. Permafrost degradation stimulates carbon loss from experimentally warmed tundra. Ecology 95 (3) http://dx.doi.org/10.1890/13-0602.1.

Hicks Pries, C.E., E.A.G. Schuur, J.G. Vogel, S.M. Natali. 2013. Moisture drives surface decomposition in thawing tundra. Journal of Geophysical Research-Biogeosciences, doi: 10.1002/jgrg.20089.

Hicks Pries, C.E., Schuur E.A.G., Crummer K.G. 2013. Thawing permafrost increases old soil and autotrophic respiration in tundra: Partitioning ecosystem respiration using δ13C and ∆14C. Global Change Biology 19 (2) doi: 10.1111/gcb.12058.

Hicks Pries, C.E., E.A.G. Schuur, and K.G. Crummer. 2012. Holocene Carbon Stocks and Carbon Accumulation Rates Altered in Soils Undergoing Permafrost Thaw. Ecosystems 12 (1): 162-173.

Hicks Pries, C.E. and J. Hughes. 2012. Inquiring into familiar objects: An inquiry-based approach to introduce scientific vocabulary. Science Activities 49 (2): 64-69.

Hicks Pries, C.E. and J. Hughes. 2011. Powering the Future: A wind turbine design competition. Science Scope 35 (4): 24-30.

Natali, S. M., E.A.G. Schuur, C. Trucco, C.E. Hicks Pries, K. G. Crummer, and A.F. Baron Lopez. 2011. Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra. Global Change Biology 17 (3): 1394-1407.

Non Refereed Articles and Book Chapters:

Schuur E.A.G., Carbone M.S., Hicks Pries C.E., Hopkins F., Natali S.M. 2016. Radiocarbon in terrestrial systems in Radiocarbon in Ecology and Earth System Science. Schuur E.A.G. and S. Trumbore, editors.

Trumbore, S., Sierra C.A., Hicks Pries C.E. 2016. Radiocarbon nomenclature, theory, models, and interpretation: Measuring age, tracing source pools, and determining cycling rates in Radiocarbon in Ecology and Earth System Science. Schuur E.A.G. and S. Trumbore, editors.

E. Pegoraro and C.E. Hicks Pries. 2013. Decay in the Alaskan tundra: the effects of initial litter quality and leaching on long-term plant decomposition. Journal of Undergraduate Research 14(2). To access: http://ufdc.ufl.edu/UF00091523/00657.

Mason C.M., C.E. Hicks Pries, and E. A. G. Schuur. 2010. Seasonal differences in nutrient allocation of arctic tundra vegetation. University of Florida Journal of Undergraduate Research 11(2). To access: http://www.clas.ufl.edu/jur/201007/index.html.

Mayor J.R. and C.E. Hicks. 2009. Potential impacts of elevated CO2 on plant interactions, sustained growth, and C cycling in salt marsh ecosystems in Human Impacts on Salt Marshes: A Global Perspective. Silliman B.R., M.D. Bertness, and E.D. Grosholz, editors.

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Tracy Punshon

Tracy Punshon

Punshon, T., K.D. Hirschi, A. Lanzirotti, B. Lai, and M.L. Guerinot (2012), The role of CAX1 and CAX3 in elemental distribution and abundance in Arabidopsis seed. Plant Physiology. Plant Physiology 158 (1) p352-362.

Jackson BP, Taylor VF, Karagas MR, Punshon T, Cottingham KL. Arsenic, organic foods and brown rice syrup. Environmental Health Perpectives. 2012; In Press

Donner, E., T. Punshon, M.L. Guerinot, and E. Lombi (2012), Understanding metal(loid) processes in plant through the integration of synchrotron techniques and plant molecular biology. Analytical Bioanalytical Chemistry. ePub ahead of print

Carey, A.M., E. Lombi, E. Donner, T. Punshon, B.P. Jackson, M.D. de Jonge, A.H. Price, and A.A. Meharg (2011) Arsenic, germanium and selenium speciation and localization in rice grain. Analytical Bioanalytical Chemistry. Anal Bioanal Chem. 2011 Dec 8. PMID: 22159463

Carey, A.M., G.J. Norton, C. Deacon, K.G. Scheckel, E. Lombi, T. Punshon, M.L. Guerinot, A. Lanzirotti, M. Newville, Y. Choi, A.H. Price, and A.A. Meharg (2011). Phloem transport of arsenic species from flag leaf to grain during grain filling. New Phytologist,192(1): p. 87-98.

Karagas, M.R., A.S. Andrew, H.H. Nelson, Z. Li, T. Punshon, A. Schned, C.J. Marsit, J.S. Morris, J.H. Moore, A.L. Tyler, D. Gilbert-Diamond, M.L. Guerinot, and K.T. Kelsey (2011), SLC39A2 and FSIP1 polymorphisms as potential modifiers of arsenic-related bladder cancer. Human Genetics. Hum Genetics 131 (3), p453-461.

Gilbert-Diamond D, Cottingham KL, Gruber JF, Punshon T, Sayarath V, Gandolfi AJ, Baker ER, Jackson BP, Folt CL, Karagas MR. Rice consumption contributes to arsenic exposure in US women. Proc Natl Acad Sci U S A. 2011 Dec 5. PMID: 22143778

Gruber, J.F., M.R. Karagas, D. Gilbert-Diamond, P. Bagley, M.S. Zens, V. Sayarath, T. Punshon, J.S. Morris, and K.L. Cottingham (2011), Associations between toenail arsenic accumulation and dietary factors in a New Hampshire population. Nutrition Journal. In Press.

Jackson, B.P., V.F. Taylor, K.L. Cottingham, and T. Punshon (2011), Arsenic concentration and speciation in infant formulas and first foods. Pure and Applied Chemistry 84, p215-224

Chu, H-H., Chiecko, J., Punshon, T., Lanzirotti, A. Lahner, B., Salt, D. and Walker, E. (2010 In press) Successful reproduction requires the function of Arabidopsis YELLOW STRIPE-LIKE1 and1TRACY PUNSHONDepartment of Biological Sciences, Dartmouth College, HB6044, Hanover, NH, 03755. Tel(603) 646 1037, Fax (603) 646 1347: [email protected] STRIPE-LIKE3 metal-nicotianamine transporters in both vegetative and reproductivestructures. Plant Physiology DOI:10.1104/pp110.159103

Punshon T, Guerinot ML, Lanzirotti A (2009) Using synchrotron x-ray fluorescence microprobesin the study of metal homeostasis in plants. Annals of Botany 103: 665-672

High WA, Ranville JF, Brown M, Punshon T, Lanzirotti A, Jackson BP (2009) Gadoliniumdeposition in nephrogenic systemic fibrosis: An examination of tissue using synchrotron x-rayfluorescence spectroscopy. Journal of the American Academy of Dermatology 62: 38-44

Kim SA, Punshon T, Lanzirotti A, Liangtao L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML (2006)Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1.Science 314: 1295-1298

Burger J, Murray S, Gaines KF, Punshon T, Shukla T, Dixon C, Gochfield M (2006) Elementlevels in snakes in South Carolina: Differences between a contaminated and a reference site onthe Savannah River Site. Environmental Monitoring and Assessment 112: 35-52

Punshon T, Lanzirotti A, Harper S, Bertsch PM, Burger J (2005) Distribution and speciation ofmetals in annual rings of black willow. Journal of Environmental Quality 34: 1165-1173

Punshon T, Jackson BP, Lanzirotti A, Hopkins W, Bertsch P, Burger J (2005) Application ofsynchrotron x-ray microbeam spectroscopy to the determination of metal distribution andspeciation in biological tissues. Spectroscopy Letters 38: 343-363

Punshon T, Jackson BP, Bertsch PM, Burger J (2004) Mass loading of nickel and uranium onplant surfaces: Application of LA-ICP-MS. Journal of Environmental Monitoring 6: 153-159

Punshon T, Gaines KF, Jenkins Jr. RA (2003) Bioavailability and trophic transfer of sedimentbound Ni and U in a southeastern wetland system. Archives of Environmental Contaminationand Toxicology 44: 30-35

Punshon T, Gaines KF, Bertsch PM, Burger J (2003) Bioavailability of uranium and nickel tovegetation in a contaminated riparian ecosystem. Environmental Toxicology and Chemistry 22:1146-1154

Punshon T, Bertsch PM, Lanzirotti A, McLeod KW, Burger J (2003) Geochemical signature ofcontaminated sediment remobilization revealed by spatially resolved X-ray microanalysis ofannual rings of Salix nigra L. Environmental Science and Technology 37: 1766-1774

Punshon T, Adriano DC, Weber JT (2002) Restoration of drastically eroded land using coal flyash and poultry biosolid. The Science of The Total Environment 296: 209-225

Punshon T, Adriano DC, Weber JT (2001) Effect of Flue Gas Desulfurization Residue on PlantEstablishment and Soil and Leachate Quality. Journal of Environmental Quality 30: 1071-1080

Punshon T, Dickinson NM (1999) Heavy Metal Resistance and Accumulation Characteristics inWillows. International Journal of Phytoremediation 1: 361-386

Punshon T, Dickinson NM (1997) Acclimation of Salix to metal stress. New Phytologist 137: 303-314

Dickinson NM, Punshon T (1997) Mobilisation of heavy metals using short rotation coppice. Aspects of Applied Biology 49: 285-292

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Nicholas James Reo

Whyte, K.P., N.J. Reo, D. McGregor, M.A. Smith and J Jenkins (2017) Seven Indigenous Principles for Successful Cooperation in Great Lakes Conservation Initiatives. In Biodiversity, Conservation and Environmental Management in the Great Lakes Basin. Freedman E and MR Neuzil (eds.) Routledge.

Reo, N.J., K.P. Whyte, D. Ranco, J. Brandt, B. Elliott, E.D. Blackmer (2017) Invasive species, Indigenous stewards and vulnerability discourse. American Indian Quarterly. 41(3): 201-223.

Lishawa S.C., B.D. Carson, J.S. Brandt, J.M. Tallant, N.J. Reo, D.A. Albert, A.M. Monks, J.M. Lautenbach, and E. Clark (2017) Mechanical Harvesting Effectively Controls Young Typha spp. Invasion and Unmanned Aerial Vehicle Data Enhances Post-treatment Monitoring. Frontiers in Plant Science 8: 619. DOI=10.3389/fpls.2017.00619   

Reo, N.J, K.P. Whyte, D. McGregor, M.A. Smith and J. Jenkins (2017) Factors that support Indigenous involvement in multi-actor environmental stewardship. AlterNative. doi: 10.1177/1177180117701028.

Janowiak, M.K., A.W. D'Amato, C.W. Swanston, L. Iverson, et al. (IN PRESS) New England and New York Forest Ecosystem Vulnerability Assessment and Synthesis. USDA Forest Service General Technical Report.

Fox, C.A., N.J. Reo, D.A. Turner, et al. (2017) “The river is us; the river is in our veins”: re-defining river restoration in three Indigenous communities. Sustainability Science. doi:10.1007/s11625-016-0421-1.

Deyo, N., M. Bohdan, R. Burke, A. Kelley, B. van der Werff, E.D. Blackmer, R.E. Grese and N.J. Reo (2014) Trails on tribal lands in the United States. Landscape and Urban Planning 125: 130–139.

Fletcher, M.L.M, K.E. Fort and N.J. Reo (2014) Tribal disruption and Indian claims. Michigan Law Review First Impressions 112(65): 65-72.

Silver, E. J., J. H. Speer, M. Kaye, N. J. Reo, L. F. Howard, et. al.  (2013)  Fire History and Age Structure of an Oakpine Forest on Price Mountain, Virginia, USA.  Natural Areas Journal 33 (4): 440-446. doi: http://dx.doi.org/10.3375/043.033.0407.

Fragoso, J. and N. J. Reo. (2013) Complex Interactions Between Biota, Landscapes and Native Peoples Ecological Processes 2 (28).

Reo, N. J. and A. Parker. (2013) Re-thinking colonialism to prepare for the impacts of rapid environmental change Climatic Change 120 (3): 671-682

Reo, N. J. and K. P. Whyte. (2012) Morality and Hunting as Elements of Traditional Ecological Knowledge. Human Ecology 40(1).

Reo, N. J. (2011) The Importance of Belief Systems in Traditional Ecological Knowledge Initiatives. International Indigenous Policy Journal 2(4).

McConnell, W. J., J. D. A. Millington, N. J. Reo, et al. (2011) Research on Coupled Human and Natural Systems (CHANS): Approach, Challenges and Strategies. Bulletin of the Ecological Society of America 92: 218–228.

Reo, N. J. and J. W. Karl (2010) Tribal and state ecosystem management regimes influence forest regeneration. Forest Ecology and Management 260 (5).

Reo, N. J. (2009) Ash trees, Indian communities and the emerald ash borer. Unpublished article available online at www.emeraldashborer.info/educational.cfm

Kazmierski, J., M. Kram, E. Mills, D. Phemister, N. J. Reo, et al. (2004) Conservation planning at the landscape scale: a landscape ecology method for regional land trusts. Journal of Environmental Planning and Management 47 (5).

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Eric G. Schaller

G. Eric Schaller

Zubo, Y.O., Blakley, I.C., Yamburenko, M.V., Worthen, J.M., Street, I.H., Franco-Zorrilla, J.M., Zhang, W., Hill, K., Raines, T., Solano, R., Kieber, J.J., Loraine, A.E., and Schaller, G.E. (2017) Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis. Proc. Natl. Acad. Sci. USA 114:E5995-E6004.

Yamburenko, M.V., Kieber, J.J., Schaller, G.E. (2017) Dynamic patterns of expression for genes regulating cytokinin metabolism and signaling during rice inflorescence development. PLoS ONE. 12: e0176060.

Binder, B.M. and Schaller, G.E., co-editors. (2017) Ethylene Signaling: Methods and Protocols Methods Mol. Biol. Vol. 1573. Humana Press, Springer Science+Business Media LLC, New York.

Street, I.H., Mathews, D.E., Yamburenko, M.V., Sorooshzadeh, A., John, R.T., Swarup, R., Bennett, M.J., Kieber, J.J., and Schaller, G.E. (2016) Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root. Development 143:3982-3993.

Street, I.H., Aman, S., Zubo, Y., Ramzan, A., Wang, X., Shakeel, S.N., Kieber, J.J., and Schaller, G.E. (2015) Ethylene inhibits cell proliferation of the Arabidopsis root meristem. Plant Physiol. 169:338-350.

Rai, M.I., Wang, X., Thibault, D.M., Kim, H.J., Bombyk, M.M., Binder, B.M., Shakeel, S., and Schaller, G.E. (2015) The ARGOS gene family functions in a negative feedback loop to desensitize plants to ethylene. BMC Plant Biol. 15:157.

Shakeel, S.N., Gao, Z., Amir, M., Chen Y.-F., Rai, M.I., Haq, N.U., and Schaller, G.E. (2015) Ethylene regulates levels of the ethylene receptor/CTR1 signaling complex in Arabidopsis thaliana. J. Biol. Chem. 290:12415-12424

Schaller, G.E., Bishopp, A., and Kieber, J.J. (2015) The yin-yang of hormones: Cytokinin and auxin interactions in plant development. Plant Cell. 27: 44-63

Kieber, J.J. and Schaller, G.E. (2014) Cytokinins. Arabidopsis Book. 12:e0168 doi: 10.1199/tab.0168

Kim, H.J., Chiang, Y.-H., Kieber, J.J., and Schaller, G.E. (2013) SCFKMD controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc. Natl. Acad. Sci. USA. 110:10028-10033.

Hill, K., Mathews, D.E., Kim, H.J., Street, I.H., Wildes, S.L., Chiang, Y.H., Mason, M.G., Alonso, J.M., Ecker, J.R., Kieber, J.J., and Schaller, G.E. (2013) Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiol. 162:212-224.

Shakeel, S.N., Wang, X., Binder, B.M., and Schaller, G.E. (2013) Mechanisms of signal transduction by ethylene: Overlapping and non-overlapping signaling roles in a receptor family. AoB PLANTS. doi: 10.1093/aobpla/plt010

Chiang, Y.-H., Zubo, Y.O., Tapken, W., Kim, H.J., Lavanway, A.M., Howard, L., Pilon, M., Kieber, J.J., Schaller, G.E. (2012) The GATA transcription factors GNC and CGA1 positively regulate chloroplast development, growth, and division in Arabidopsis. Plant Physiol. 160: 332-348.

Hall, B.P., Shakeel, S.N., Amir, M., Haq, N.U., Qu, X. and Schaller, G.E. (2012) Histidine-kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol. 159:682-95

Tsai, Y.-C., Weir, N.R., Hill, K., Zhang, W., Kim, H.J., Shiu, S.-H., Schaller, G. E., Kieber, J.J. (2012) Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiol. 158:1666-84

Schaller, G.E., Shiu, S.H., and Armitage, J.P. (2011) Two-component systems and their co-option for eukaryotic signal transduction. Current Biology. 21:R320-R330

Mason M.G., Jha D., Salt D.E., Tester M., Hill K., Kieber J.J., Schaller G.E. (2010) Type-B response regulators ARR1 and ARR12 regulate expression of AtHKT1;1 and accumulation of sodium in Arabidopsis shoots. Plant J. 64:753-763

Chen, Y.-F., Gao, Z., Kerris III, R.J., Wang, W., Binder, B.M., Schaller, G.E. (2010) Ethylene receptors function as components of high-molecular-mass protein complexes in Arabidopsis. PLoS ONE, 5:e8640. doi:10.1371/journal.pone.0008640.

Kieber, J.J., and Schaller, G.E. (2010) The perception of cytokinin: A story 50 years in the making. Plant Physiology.154: 487-492.

Argyros, R.D., Mathews, D.E., Chiang, Y.-H., Palmer, C.M., Thibault, D.M., Etheridge, N., Argyros, D.A., Mason, M.G., Kieber, J.J., and Schaller, G.E. (2008) Type-B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20:2102-2116

Gao, Z., Wen, C.-K., Binder, B.M.,, Chen, Y.-F., Chang, J., Chiang, Y.-H., Kerris III, R.J., Chang, C., Schaller, G.E. (2008) Heteromeric interactions among ethylene receptors mediate signaling in Arabidopsis. J. Biol. Chem. 283:23081-23810

Chen, Y.-F., Shakeel, S.N., Bowers, J., Zhao-X.-C., Etheridge, N., and Schaller, G.E. (2007) Ligand-induced degradation of the ethylene receptor ETR2 through a proteasome-dependent pathway in Arabidopsis. J. Biol. Chem. 282: 24752 – 24758

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Roger D. Sloboda

Roger D. Sloboda

Sloboda, Roger D. (2016).  Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in: Cytoskeleton; Methods and Protocols, 3rd ed., pp. 119-137.  doi 10.1007/978-1-4939-3124-8_6

Sloboda, Roger D. (2015). Isolation and Analysis of Microtubules and Associated Proteins, In: Subcellular Fractionation: A Laboratory Manual, edited by Paul R. Pryor, Cold Spring Harbor Press, New York, pp: 115-140.  doi: 10.1101/pdb.top074526

Kull, F. Jon and Roger D. Sloboda (2014).  A Slow Dance for Microtubule Acetylation.  Cell 157:1255-1256.  doi: 10.1016/j.cell.2014.05.021

Werner-Petersen, Rita and Sloboda, Roger D.  (2013).  Methylation of Structural Components of the Axoneme Occurs During Flagellar Disassembly,  Biochemistry, 52:8501-09.  doi 10.1021/bi4011623

Sloboda, Roger D.  (2009).  Flagella and Cilia: The Long and the Short of It.  Current Biology, 19:R1084-1087.  doi 10.1016/j.cell.2014.05.021

Sloboda, Roger D.  (2009).  Post-Translational Protein Modifications in Cilia and Flagella.  Methods in Cell Biology, 94:347-363.  doi:10.1016/S0091-679X(08)94018-8

Sloboda, Roger D.  (2009). Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in Methods in Molecular Biology: Cytoskeleton Methods and Protocols, ed. by Ray Gavin, Humana Press, 586:207-225.  doi: 10.1007/978-1-4939-3124-8_6

Sloboda, Roger D. and Louisa Howard (2009).  Protein Methylation in Full Length Chlamydomonas Flagella.  Cell Motility and the Cytoskeleton, 66:650-660.  doi: 10.1002/cm.20387

Schneider, Mark J., Megan Ulland, and Roger D. Sloboda (2008).  A Protein Methylation Pathway in Chlamydomonas Flagella Is Active During Flagellar Resorption, Molecular Biology of the Cell, 19:4319-4327. doi: 10.1091/mbc.E08-05-0470

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Elizabeth F. Smith

Elizabeth F. Smith

Dymek EE, and Smith EF. RSP11 serves as a RS1 adaptor and plays a fundamental role in controlling ciliary motility. (in preparation)

Dymek EE, and Smith EF. The dynamic localization of katanin during assembly of the ciliary central tubules.  (in preparation)

Loreng, TD. and EF Smith. (2017) The central apparatus of cilia and eukaryotic flagella. In Cilia and Flagella. Wallace Marshall ed. Cold Spring Harbor Laboratory Press. 9(2)

Mizuno, K., E.E. Dymek and Smith EF. (2016) Microtubule binding protein PACRG plays a role in regulating specific ciliary dyneins during microtubule sliding. (in press) Cytoskeleton. 73(12):703-711.

Perrone, C.A., D. Tritschler, R. Bower, E. T. O'Toole, M. J. Wargo, E. F. Smith, and M. E. Porter. BOP2 encodes a novel WD-repeat protein that regulates inner arm dynein activity. (in preparation)

Vasudevan, K.K., K. Song, L.M. Alford, W.S. Sale, E.E. Dymek, E.F Smith, T. Hennessey, E. Joachimiak, P. Urbanska, D. Wloga, W. Dentler, D. Nicastro, and J. Gaertig. (2015) FAP206 is a microtubule-docking adapter for ciliary radial spoke 2 and dynein cMolecular Biology of the Cell. Feb 15;26(4):696-710.

Wren, K.N., J.M. Craft, D. Tritschler, A. Schauer, D.K. Patel, E.F Smith, M.E. Porter, P. Kner, K.F.Lechtreck. (2013) A differential cargo-loading model of ciliary length regulation by IFTCurrent Biology. Dec 16;23(24):2463-71.

DiPetrillo, C. and E.F. Smith. (2013) Methods for analysis of calcium / calmodulin signaling in cilia and flagellaMethods in Enzymology, 524: 37-57.

Dymek, E.E., T. Heuser, J. Lin, E.F. Smith, and D. Nicastro. (2012) The CSC connects three major axonemal complexes involved in dynein regulation. Molecular Biology of the Cell 23(16):3143-55

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38 .

Brown J.M., C. DiPetrillo , E.F. Smith, G.B. Witman. (2012) A FAP46 mutant provides new insights into the function and assembly of the C1d complex of the ciliary central apparatusJournal of Cell Science 125(16):3904-13

Dymek, E.E. and E.F. Smith. (2012) PF19 encodes the p60 catalytic subunit of katanin and is required for assembly of the flagellar central apparatus in Chlamydomonas. J. Cell Science 125(Pt 14):3357-66

Goduti, D., and E.F. Smith. (2012) Analyses of functional domains within the PF6 protein of the central apparatus reveal a role for PF6 sub-complex members in regulating flagellar beat frequency. Cytoskeleton 69(3):179-94

 

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38

Dymek, E.E., T. Heuser, D. Nicastro and E.F. Smith. (2011) The CSC is required for complete radial spoke assembly and wild-type ciliary motility. Molecular Biology of the Cell 22(14):2520-31

Smith, E.F. and R. Rohatgi. (2011) Cilia 2010: The surprise organelle of the decade. Science Signaling. 4:55 mr1. 

Straschil, U., A. Talman, D. Ferguson, K. Bunting, Z. Xu, Liz Bailes, J. Coates, T. Holder, E.F. Smith, and R. Tewari. (2010) The Armadillo repeat protein PF16 is essential for flagellar structure and function in Plasmodium male gametes. PLoS ONE . Vol. 5:10 e12901

DiPetrillo, C., and E.F. Smith. (2010) Pcdp1 is a central apparatus protein that binds Ca 2+ -calmodulin and regulates ciliary motility. Journal of Cell Biology 189(3):601-612

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Mark R. Spaller

Knafo S, Sánchez-Puelles C, Palomer E, Delgado I, Draffin JE, Mingo J, Wahle T, Kaleka K, Mou L, Pereda-Perez I, Klosi E, Faber EB, Chapman HM, Lozano-Montes L, Ortega-Molina A, Ordóñez-Gutiérrez L, Wandosell F, Viña J, Dotti CG, Hall RA, Pulido R, Gerges NZ, Chan AM, Spaller MR, Serrano M, Venero C, Esteban JA. "PTEN recruitment controls synaptic and cognitive function in Alzheimer's models." Nat Neurosci. 2016, 19, 443-53

Marshall J, Wong KY, Rupasinghe CN, Tiwari R, Zhao X, Berberoglu ED, Sinkler C, Liu J, Lee I, Parang K, Spaller MR, Hüttemann M, Goebel DJ. "Inhibition of N-methyl-D-aspartate-induced retinal neuronal death by polyarginine peptides Is linked to the attenuation of stress-induced hyperpolarization of the inner mitochondrial membrane potential." Biol Chem. 2015, 290, 22030-48

Pal K, Pletnev AA, Dutta SK, Wang E, Zhao R, Baral A, Yadav VK, Aggarwal S, Krishnaswamy S, Alkharfy KM, Chowdhury S, Spaller MR, Mukhopadhyay D. "Inhibition of endoglin-GIPC interaction inhibits pancreatic cancer cell growth." Mol Cancer Ther. 2014, 13, 2264-75

Amacher JF, Zhao R, Spaller MR, Madden DR. "Chemically modified peptide scaffolds target the CFTR-associated ligand PDZ domain." PLoS One 2014, 19;9(8):e103650

LeBlanc BW, Iwata M, Mallon AP, Rupasinghe CN, Goebel DJ, Marshall J, Spaller MR, Saab CY. "A cyclic peptide targeted against PSD-95 blocks central sensitization and attenuates thermal hyperalgesia." Neuroscience. 2010, 167, 490-500

Sharma SC, Memic A, Rupasinghe CN, Duc AC, Spaller MR. "T7 phage display as a method of peptide ligand discovery for PDZ domain proteins." Biopolymers. 2009, 92, 183-93

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Paula R. Sundstrom

Hogan DA, Sundstrom PThe Ras/cAMP/PKA signaling pathway and virulence in Candida albicans.Future Microbiol 2009 Dec; 4(10):1263-70PMID: 19995187

Rollenhagen C, Wollert T, Langford GM, Sundstrom PStimulation of cell motility and expression of late markers of differentiation in human oral keratinocytes by Candida albicans.Cell Microbiol 2009 Jun; 11(6):946-66PMID: 19302578

Wolyniak MJ, Sundstrom PRole of actin cytoskeletal dynamics in activation of the cyclic AMP pathway and HWP1 gene expression in Candida albicans.Eukaryot Cell 2007 Oct; 6(10):1824-40PMID: 17715368

Ponniah G, Rollenhagen C, Bahn YS, Staab JF, Sundstrom PState of differentiation defines buccal epithelial cell affinity for cross-linking to Candida albicans Hwp1.J Oral Pathol Med 2007 Sep; 36(8):456-67PMID: 17686003

Kim S, Wolyniak MJ, Staab JF, Sundstrom PA 368-base-pair cis-acting HWP1 promoter region, HCR, of Candida albicans confers hypha-specific gene regulation and binds architectural transcription factors Nhp6 and Gcf1p.Eukaryot Cell 2007 Apr; 6(4):693-709PMID: 17220463

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Hannah ter Hofstede

Symes LB, Page RA, ter Hofstede HM (2016) Effects of acoustic environment on male calling activity and timing in Neotropical forest katydids. Behav Ecol Sociobiol online first DOI 10.1007/s00265-016-2157-4.

ter Hofstede HM, Ratcliffe JM (2016) Evolutionary escalation: the bat-moth arms race. J Exp Biol 219: 1589-1602.

ter Hofstede HM, Schoneich S, Robillard T, Hedwig B (2015) Evolution of a communication system by sensory exploitation of startle behavior. Curr Biol 25: 1-8.

Falk JJ, ter Hofstede HM, Jones PL, Dixon MM, Faure PA, Kalko EKV, Page RA (2015) Sensory-based niche partitioning in a multiple predator - multiple prey community. Proc R Soc B 282: 20150520.

Robillard T, ter Hofstede HM, Orivel J, Vincente NM (2015) Bioacoustics of the Neotropical Eneopterinae (Orthoptera, Grylloidea, Gryllidae). Bioacoustics 24: 123-143.

ter Hofstede HM, Goerlitz HR, Ratcliffe JM, Holderied MW, Surlykke A (2013) The simple ears of moths are tuned to the calls of their sympatric bat community. J Exp Biol, doi: 10.1242/jeb.093294.

ter Hofstede HM, Goerlitz HR, Montealegre-Z F, Robert D, Holderied MW (2011) Tympanal mechanics and neural responses in the ears of a noctuid moth. Naturwissenschaften 98:1057-1061

Goerlitz HR, ter Hofstede HM, Zeale MRK, Jones G, Holderied MW (2010) An aerial-hawking bat uses stealth echolocation to counter moth hearing. Current Biology 20:1568-1572

ter Hofstede HM, Kalko EKV, Fullard J (2010) Auditory-based defence against gleaning bats in Neotropical katydids (Orthoptera: Tettigoniidae). J Comp Physiol A 196:349-358

ter Hofstede HM, Killow J, Fullard J (2009) Gleaning bat echolocation calls do not elicit antipredator behaviour in the Pacific field cricket, Teleogryllus oceanicus (Orthoptera: Gryllidae). J Comp Physiol A 195:769–776

ter Hofstede HM, Fullard JH (2008) The neuroethology of song cessation in response to gleaning bat calls in two species of katydids, Neoconocephalus ensiger and Amblycorypha oblongifolia. J Exp Biol 211:2431-2441

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Ross A. Virginia

Gooseff, M. N., J. E. Barrett, B. J. Adams, P. T. Doran, A. G. Fountain, W. B. Lyons, D. M. McKnight, J. C. Priscu, E. Sokol, C. Takacs-Vesbach, M. L. Vandegehuchte, R. A. Virginia, and D. H. Wall. Decadal ecosystem response to an anomalous melt season in a polar desert in Antarctica. Nature Ecology and Evolution (2017) doi:10.1038/s41559-017-0253-0

Heindel, R. C., L. E. Culler, and R. A. Virginia. Rates and processes of aeolian soil erosion in West Greenland. The Holocene (2017) 1-10, DOI: 10.1177/0959683616687381 

Bradley-Cook, J I, and R A Virginia. Soil carbon storage and respiration potential across an age and climate gradient in western Greenland. Polar Biology 39:1283-1295, (2016) DOI 10.1007/s00300-015-1853-2

Heindel, R C, J W Chipman, and R A Virginia. The spatial distribution and ecological impacts of aeolian soil erosion in Kangerlussuaq, West Greenland. Annals fo the Association of American Geographers (2015) 105(5):875-890, DOI: 10.1080/00045608.2015.1059176  Press release

Mikucki, J A, E Auken, S Tulacyzk, R A Virginia, C Schamper, K I Sorensen, P T Doran, H Dugan, and N Foley.  Deep groundwater and potential subsurface habitats beneath an Antarctic dy valley. Nature Communications 6, Article number: 6831, doi:10.1038/ncomms7831 (2015)

Dugan, H A, P T Doran, S Tulaczyk, J A Mikucki, S A Arcone, E Auken, C Schamper, and R A Virginia. Subsurface imaging reveals a confined aquifer beneath an ice-sealed Antarctic lake. Geophys. Res Lett, 42:96-103, (2015)

Ball, B A, C R Tellez, and R A Virginia. Penquin activity influences soil biogeochemistry and soil respiration in rookeries on Ross Island, Antarctica. Polar Biology 38:1357-1368 (2015) DOI 10.1007/s00300-015-1699-7

Ball, B A and R A Virginia. Controls on diel CO2 flux across soil mositure gradients in a polar desert. Antarctic Science 27:527-534, doi: 10.1017/S0954102015000255 (2015)

Ball, B A and R A Virginia, The ecological role of moss in a polar desert: implications for aboveground- belowground and terrestrial- aquatic linkages. Polar Biology, 37 (2014), 651-664

Ball, B A and R A Virginia. Microbial biomass and respiration responses to nitrogen fertilization in a polar desert. Polar Biology 37 (2014):573-585

Collins, J. F., M. Sfraga, R. A. Virginia, and K. S. Yalowitz. 2013. A Euro-Atlantic Action Plan for Cooperation and Enhanced Arctic Security. Conference Report and Recommendations to the Arctic Council and Interested Parties. February 11-12, 2013, Carnegie Endowment of International Peace, Washington, D. C. and the University of the Arctic Institute for Applied Circumpolar Policy

Virginia, R. A. and D. H. Wall. Ecosystem Function, Principles of.  In: Levin, S. A. (ed.) Encyclopedia of Biodiversity, second edition, Volume 3 (2013), pp. 90-95, Academic Press: Waltham MA

Levy L, M A Kelly, J A Howley, and R A Virginia. Age of the Ørkendalen moraines, Kangerlussuaq, Greenland: Constraints on the extent of the southwestern margin of the Greenland Ice Sheet during the Holocene, Quaternary Science Reviews 52 (2012) 1-5

Holm, L K, L A Grenoble, and R A Virginia. A Praxis for Ethical Research and Scientific Conduct in Greenland, Études/Inuit/Studies 35 (2011) 187-200

Virginia, R A, An Ecosystem Approach to Mountain Resorts in Mountain Resorts: Law and Ecology.  J E Milne, J LaMense and R A Virginia (eds.) Ashgate Press, (2009) 24-38

Barrett, J E, R A Virginia, et al., Persistent effects of a discrete climate event on a polar desert ecosystem. Global Change Biology 14:10 (2008) 2249-2261

Chapin, F S III, M Berman, T V Callaghan, et al., “Polar Systems,” in Ecosystems and Human Well-Being: Current State and Trends. The Millennium Ecosystem Assessment Series, Vol. 1 , R Hassan, R Scholes and N Ash (eds.), (2005) 717-743

Brooks, R O, R T Jones, and R A Virginia. Law and Ecology: The Rise of the Ecosystem Regime. Ashgate Press (2002), 430pp.

Fountain, A. G., G. Saba, S. Stammerjohn, B. Adams, P. Doran, W. Fraser, M. Gooseff, M. Obryk, J. Priscu, and R. A. Virginia.The role of a large-scale climate event on Antarctic ecosystem processes. BioScience 66:848-863 (2016)

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Lee A Witters

Lee Alan Witters

Hurley, RL, Barre, LK, Wood, SD, Anderson, KA, Kemp, BE, Means, AR and Witters, LA (2006), Regulation of AMP-activated protein kinase by multi-site phosphorylation in response to agents that elevate cellular cAMP, J. Biol. Chem. 281, 36662-36672,

Barre, L, Richardson, C, Hirshman, MF, Brozinick, Fiering, S, Kemp, BE, Goodyear, LJ and Witters, LA (2007) A genetic model for the chronic activation of skeletal muscle AMP-activated protein kinase leads to glycogen accumulation, Am J Physiol Endo Metab, 292, E802-811

Gleason, CE, Lu, D, Witters, LA, Newgard, CB and Birnbaum, MJ, (2007) The role of AMPK and mTOR in nutrient sensing in pancreatic β-cells, J. Biol. Chem., 282, 10341-103451

Roecki, KSC, Hirshman, MF, Brandauer, J, Fujii, N.. Witters, LA and Goodyear, LJ (2007), Skeletal Muscle Adaptation to Exercise Training AMP-Activated Protein Kinase Mediates Muscle Fiber Type Shift, Diabetes, 56, 2062-2069

Anderson, KA, Riber, T, Lin, F, Noeldner, P, Green, M, Murhlbauer, MJ, Witters LA, Kemp, BE and Means, AM (2008) A role for CaMKK2 in hypothalamic regulation of energy balance, Cell Metabolism, 7, 377-388

Folmes, KD, Witters LA, Allard, MF, Young ME and Dyck, JRB (2007) The AMPK gamma-1 R70Q mutant regulated multiple metabolic and growth pathways in the cardiac myocyte, Am J Physiol Heart Circ Physiol., 293(6):H3456-64

Vadasz, I, Dada, LA, Briva, A, C hen, J, Welch, LC, Diaz, I, Lecuona, E, Chandel, NS, Witters, LA, Seeger, W and Sznajder, JI (2008) AMP-activated protein kinase mediates the high CO2-induced alveolar epithelial dysfunction by down-regulating the Na,K-ATPase, J Clin Invest, 118(2):752-62

Ho, RC, Fujii, N, Witters, La, Hirshman, MF and Goodyear, LJ (2007) Dissociation of AMP-activated protein kinase and p38 mitogen-activated protein kinase signaling in skeletal muscle, Biochem Biophys Res Comm, 362(2):354-9

Iseli, TJ, Oakhill, JS, Bailey, MF, Wee, S, Walter, M, van Denderen, BJ, Castelli, LA, Katsis, F, Witters, LA, Stapeton, D, Macauley, SL, Mickhell, BJ and Kemp, BE (2008) AMPK subunit interactions: β1 Thr-263 and Tyr-267 are required for β1:γ1 association, J Biol Chem, 283(8):4799-807

Witters, LA (2008) A Diligent Effort, Dartmouth Medicine, 32, 52-65

Witters, LA, Luciano, M, Williams, C and Yang, J (2008), Diabetes Detective, Dartmouth Medicine, 33, 36-41

Gusarova, GA, Dada, LA, Kelly, A, Brodie, C, Witters, LA and Sznajder, JI (2009) α-1-AMP-activated protein kinase (AMPK) regulates hypoxia-induced NaK-ATPase encocytosis via direct phosphorylation of PKCζ, Mol Cell Biol, 29, 3455-3464

Joly, E, Roduit, R, Peyot, M-L, Habinowski, SA, Ruderman, N, Witters, LA and Prentki, M (2009) Glucose represses peroxisome proliferator-activated receptor α gene expression via AMP-activated protein kinase but not via p38 mitogen-activated protein kinase in the pancreatic β-cell, J Diabetes, 1. 263-272

Baumrin, E, Corbett, W, Kulkarni, A and Witters LA (2009) The most unspeakable terror, Dartmouth Medicine, 34, 44-57

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Olga Zhaxybayeva

Olga Zhaxybayeva

Stephen M. J. Pollo, Abigail A. Adebusuy, Timothy J. Straub, Julia M. Foght, Olga Zhaxybayeva, Camilla L. Nesbo (2017) "Genomic insights and temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20C to 79C", Extremophiles, in press; preprint is available at https://doi.org/10.1101/060053

Straub TJ and Zhaxybayeva O (2017) "A null model for microbial diversification", Proc Natl Acad Sci U S A. 2017, 114: E5414-E5423. [PubMed]

Lori R. Shapiro, Erin D. Scully, Timothy J. Straub, Jihye Park, Andrew G. Stephenson, Gwyn Beattie, Mark Gleason, Roberto Kolter, Miguel C. Coelho, Consuelo M. DeMoraes, Mark C. Mescher, and Olga Zhaxybayeva (2016) "Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia tracheiphila", Genome Biol Evol., 8:649-664.

Pollo SM, Zhaxybayeva O, Nesbo CL (2015) "Insights into thermoadaptation and the evolution of mesophily from the bacterial phylum Thermotogae." Can J Microbiol., 61:655-70.

Lossouarn J, Nesbo CL, Mercier C, Zhaxybayeva O, Johnson MS, Charchuck R, Farasin J, Bienvenu N, Baudoux AC, Michoud G, Jebbar M, Geslin C. (2015) "Menage a trois": a selfish genetic element uses a virus to propagate within Thermotogales. Environ Microbiol., 17:3278-88.

Nesbo CL, S Swithers K, Dahle H, Haverkamp TH, Birkeland NK, Sokolova T, Kublanov I, Zhaxybayeva O. (2014) "Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments." ISME J. 2015, 9:1532-42.

Olga Zhaxybayeva, Ramunas Stepanauskas, Nikhil R. Mohan, and R. ThanePapke (2013) "Cell sorting analysis of geographically separated hypersaline environments", Extremophiles, 17: 265-75.

Complete list of publications is available at http://www.dartmouth.edu/~ecglab/pubs.html

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