Recent Publications

Amanda A. Amodeo

Bhatt AD, Brown MG, Wackford AB, Shindo Y, Amodeo AA. 2024. Local nuclear to cytoplasmic ratio regulates chaperone-dependent H3 variant incorporation during zygotic genome activation. bioRxiv [Preprint]. 2024 Jul 16:2024.07.15.603602. doi: 10.1101/2024.07.15.603602. PMID: 39071352

Balachandra S, Amodeo AA. 2024. Bellymount-Pulsed Tracking: A Novel Approach for Real-Time In vivo Imaging of Drosophila Abdominal Tissues. bioRxiv. 2024 Apr 27:2024.03.31.587498. doi: 10.1101/2024.03.31.587498. PMID: 38617254

Balachandra S, Sarkar S, Amodeo AA. The Nuclear-to-Cytoplasmic Ratio: Coupling DNA Content to Cell Size, Cell Cycle, and Biosynthetic Capacity. 2022. Annu Rev Genet. Nov 30;56:165-185. doi: 10.1146/annurev-genet-080320-030537. PMID: 35977407

Shindo Y, Brown MG, Amodeo AA. 2022. Versatile roles for histones in early development. Curr Opin Cell Biol. Apr;75:102069. doi: 10.1016/j.ceb.2022.02.003. PMID: 35279563

Shindo Y and Amodeo AA. 2021. Modeling the role for nuclear import dynamics in the early embryonic cell cycle. Biophysical Journal

Shindo Y and Amodeo AA. 2021. Excess histone H3 is a competitive Chk1 inhibitor that controls cell-cycle remodeling in the early Drosophila embryo. Current Biology.

Syed S, Wilky H, Raimundo J, Lim B, and Amodeo AA. 2021. The nuclear to cytoplasmic ratio directly regulates zygotic transcription in Drosophila through multiple modalities. PNAS.

Chari S, Wilky H, Govindan J, and Amodeo AA. 2019. Histone concentration regulates the cell cycle and transcription at the mid-blastula transition. Development.

Shindo Y and Amodeo AA. 2019. Dynamics of free and chromatin-bound Histone H3 during early embryogenesis. Current Biology.

Amodeo AA & Skotheim JS. 2015. Cell size control. In: Heald R, Wake D, and Hariharan I, editors. Size Control in Biology, from Organelles to Organisms. New York: Cold Spring Harbor Laboratory Press.

Amodeo AA, Jukam D, Straight AF, and Skotheim JM. 2015. Histone titration by DNA sets the threshold for the mid-blastula transition in Xenopus. PNAS.
https://www.sciencedirect.com/science/article/abs/pii/S095506742200014X?via%3Dihub
Matthew P. Ayres

Ayres, M. P., M. J. Lombardero. 2018. Forest pests and their management in the Anthropocene. Canadian Journal of Forest Research 48:292-301.
Valtonen, A., A. Hirka, L. Szocs, M. P. Ayres, H. Roininen, and G. Csoka. 2017. Long-term species loss and homogenization of moth communities in Central Europe. Journal of Animal Ecology 86:730-738. doi: 10.1111/1365-2656.12687
Lovett, Gary M., Marissa Weiss, Andrew M. Liebhold, Thomas P. Holmes, Brian Leung, Kathy-Fallon Lambert, David A. Orwig, Faith T. Campbell, Jonathan Rosenthal,Deborah G. McCullough, Radka Wildova, Matthew P. Ayres, Charles D. Canham, David R. Foster, Shannon L. LaDeau, Troy Weldy. 2016. Nonnative forest insects and pathogens in the United States: impacts and policy options. Ecological Applications 26: 1437-1455, doi: 10.1890/15-1176.1
Valtonen, Anu, Reima Leinonen, Juha Pöyry, Heikki Roininen, Jukka Tuomela, and Matthew P. Ayres. 2014. Is climate warming more consequential towards poles? The phenology of Lepidoptera in Finland. Global Change Biology 20:16-27
Lombardero, Maria J., Matthew P. Ayres, Flora E. Krivak-Tetley, and Katrin N.E. Fitza. 2016. Population biology of the European woodwasp, Sirex noctilio, in Galicia, Spain. Bulletin of Entomological Research 106: 569-580.
Culler, Lauren E., Matthew P. Ayres, and Ross A. Virginia. 2015. In a warmer Arctic, mosquitoes avoid increased mortality from predators by growing faster. Proceedings of the Royal Society B 282: 20151549.
Symes, Laurel. B. , Nancy Serrell, and M. P. Ayres. 2015. A practical guide for mentoring scientific inquiry. Bulletin of the Ecological Society of America 96(2): 352-367.
Weed, Aaron S., M.P. Ayres, and Jeffrey A. Hicke. 2013. Consequences of climate change for biotic disturbances in North American forests. Ecological Monographs 83:441–470.
Martinson, S. J., T. Ylioja, B. T. Sullivan, R. F. Billings, and M. P. Ayres. 2013. Alternate attractors in the population dynamics of a tree-killing bark beetle. Population Ecology 55:95-106.
Valtonen, A., F. Molleman, C.A. Chapman, J.R. Carey, M.P. Ayres, and H. Roininen. 2013. Tropical phenology: bi-annual rhythms and interannual variation in an Afrotropical butterfly assemblage. Ecography, in press.
Marini, L., M. P. Ayres, A. Battisti, and M. Faccoli. 2012. Climate affects severity and altitudinal distribution of outbreaks in an eruptive bark beetle. Climatic Change 115:327-341.
Shi, Peijan, Bo Wang, MP Ayres, Feng Gea, Ling Zhong, and Bai-Lian Li. 2012. Influence of temperature on the northern distribution limits of Scirpophaga incertulas Walker (Lepidoptera: Pyralidae) in China. Journal of Thermal Biology 37:130-137.
Garnas, JR., DR Houston, MP Ayres, and C. Evans. 2011. Disease ontogeny overshadows effects of climate and species interactions on population dynamics in a nonnative forest disease complex. Ecography 34: 1-10.
Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779
Garnas, JR., MP Ayres, AM Liebhold, and C Evans. 2011. Subcontinental impacts of an invasive tree disease on forest structure and dynamics. Journal of Ecology 99: 532-541.
Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779
Valtonen, A, MP Ayres, H Roininen, J Pöyry and R Leinonen. 2011. Environmental controls on the phenology of moths - predicting plasticity and constraint under climate change. Oecologia 165: 237-248.
Seppälä, R., A. Buck, and P. Katila. (eds.). 2009. Adaptation of Forests and People to Climate Change: A Global Assessment Report. International Union of Forest Research Organizations, Helsinki. IUFRO World Series Volume 22. 224 p.
Lombardero, M.J., P. Vázquez-Mejuto, and M.P. Ayres. 2008. Role of plant enemies in the forestry of indigenous versus nonindigenous pines. Ecological Applications 18: 1171-1181.
Martinson, S.J., R.W. Hofstetter, and M.P.Ayres. 2007. Why does longleaf pine have low susceptibility to southern pine beetle? Canadian Journal of Forest Research 37: 1966–1977.
Friedenberg, N.A., J.A. Powell and M.P. Ayres. 2007 Synchrony's double edge: transient dynamics and the Allee effect in stage-structured populations. Ecology Letters 10: 564–573.
Tran , J.K., T. Ylioja, R. Billings, J. Régnière, and M.P. Ayres. 2007. Impact of minimum winter temperatures on the population dynamics of Dendroctonus frontalis (Coleoptera: Scolytinae) Ecological Applications 17: 882-899.
Reynolds, L.V., M.P. Ayres, T.G. Siccama, and R.T. Holmes. 2007. Climatic effects on caterpillar fluctuations in northern hardwood forests. Canadian Journal of Forest Research 37: 481-491
Hofstetter, R.W., J.T. Cronin, K.D. Klepzig, J.C. Moser, and M.P. Ayres. 2006. Antagonisms, mutualisms and commensalisms affect outbreak dynamics of the southern pine beetle. Oecologia 147: 679-691.
Lombardero, M.J., M. P. Ayres, R. W. Hofstetter, J.C. Moser, and K.D. Klepzig. 2003. Strong indirect interactions of Tarsonemus mites (Acarina, Tarsonemidae) and Dendroctonus frontalis (Coleoptera:Scolytidae).Oikos 102: 243-252.
Lombardero, M.J., M.P. Ayres, P.L. Lorio, Jr., and J.J. Ruel. 2000. Environmental effects on constitutive and inducible resin defenses of loblolly pine.Ecology Letters 3:329-339.
Ayres, M.P., Wilkens, R.T., Ruel, J.J., M.J. Lombardero, and E. Vallery. 2000. Nitrogen budgets of phloem-feeding bark beetles with and without symbiotic fungi (Coleoptera: Scolytidae).Ecology 81:2198-2210.
Ruel, J. J., and M.P. Ayres. 1999. Jensen's inequality predicts effects of environmental variation. Trends in Ecology and Evolution 14:361-366.
Ayres, M. P., T. P. Clausen, S. F. MacLean, Jr., A. M. Redman, and P. B. Reichardt. 1997. Diversity of structure and anti-herbivore activity in condensed tannins.Ecology 78: 1696-1712.
Ayres, M.P., and J.M. Scriber. 1994. Local adaptation to regional climates in Papilio canadensis (Lepidoptera:Papilionidae).Ecological Monographs 64: 465-482.
Schamel, D., and M. P. Ayres. 1992. The "minds-on" approach: student creativity and personal involvement in the undergraduate science laboratory. Journal of College Science Teaching 21:226-229.
Ayres, M.P. and S.F. MacLean, Jr. 1987. Development of birch leaves and the growth energetics of Epirrita autumnata (Geometridae).Ecology 68:558-568.
Magdalena Bezanilla

Please visit the following PubMed link for a list of publication: https://www.ncbi.nlm.nih.gov/pubmed/?term=magdalena+bezanilla
Sharon E. Bickel

Haseeb MA, Weng KA, Bickel SE. 2024. Chromatin-associated cohesin turns over extensively and forms new cohesive linkages in Drosophila oocytes during meiotic prophase. Curr Biol. Jul 8;34(13):2868-2879.e6. doi: 10.1016/j.cub.2024.05.034. Epub 2024 Jun 12. PMID: 38870933

Haseeb MA, Bernys AC, Dickert EE, Bickel SE. 2024. An RNAi screen to identify proteins required for cohesion rejuvenation during meiotic prophase in Drosophila oocytes.G3 (Bethesda). 2024 Aug 7;14(8):jkae123. doi: 10.1093/g3journal/jkae123. PMID: 38849129

Haseeb MA, Weng KA, Bickel SE. 2023. Chromatin-associated cohesin turns over extensively and forms new cohesive linkages during meiotic prophase. bioRxiv . 2023 Aug 18:2023.08.17.553729. doi: 10.1101/2023.08.17.553729.

Perkins AT, Greig MM, Sontakke AA, Peloquin AS, McPeek MA, Bickel SE. 2019. Increased levels of superoxide dismutase suppress meiotic segregation errors in aging oocytes. Chromosoma. 2019 Sep;128(3):215-222. doi: 10.1007/s00412-019-00702-y. Epub 2019 Apr 29. PMID: 31037468

Perkins, A.T. and Bickel, S.E.. (2017) Using Fluorescence In Situ Hybridization (FISH) to Monitor the State of Arm Cohesion in Prometaphase and Metaphase I Drosophila Oocytes .J Vis Exp. Dec 6;(130). doi:10.3791/56802. PMID:29286418 Link to Video
Perkins, A.T., Das, T.M., Panzera, L.C. and Bickel, S.E. (2016) Oxidative stress in oocytes during midprophase induces premature loss of cohesion and chromosome segregation errors. PNAS: doi: 10.1073/pnas.1612047113.
Giauque, C.C. and Bickel, SE. (2016) Heterochromatin-Associated Proteins HP1a and Piwi Collaborate to Maintain the Association of Achiasmate Homologs in Drosophila Oocytes. Genetics.: May;203(1):173-89. doi: 10.1534/genetics.115.186460.
Weng, K.A., Jeffreys, C.A. and Bickel, S.E. (2014). Rejuvenation of meiotic cohesion in oocytes during prophase I is required for chiasma maintenance and accurate chromosome segregation. PLoS Genet.: Sep 11;10(9):
Subramanian, V.V. and Bickel, S.E. (2009) Heterochromatin-mediated association of achiasmate homologues declines with age when cohesion is compromised. Genetics.: 181:1207-1218.
Subramanian, V.V. and Bickel, S.E. (2008) Aging predisposes oocytes to meiotic nondisjunction when the cohesin subunit Smc1 is reduced. PLoS Genet.: Nov;4(11):e1000263. doi: 10.1371/journal.pgen.1000263.
Page, S.L., Khetani, R.S.,Lake, C.M., Nielsen, R.J., Jeffress J.K., Bickel, S.E., and Hawley, R.S. (2008) corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes . PLoS Genet.: 4(9): e1000194. doi: 10.1371/journal.pgen.1000194.
Gause, M., Webber, H., Misulovin, Z., Haller, G., Rollins, R.A., Eissenberg, J.C., Bickel, S.E. and Dorsett, D. (2008) Functional links between Drosophila Nipped-B and cohesin in somatic and meiotic cells. Chromosoma: 17:51-66
Khetani, R. and Bickel, S.E. (2007) Regulation of cohesion and chromosome core morphogenesis during pachytene in Drosophila oocytes. Journal of Cell Science: 120: 3123-3137.
Bickel, S E, "Aging (Not So) Gracefully," Nature Genetics: 37 (2005) 1303-1304.
Webber, H., Howard, L. and Bickel S.E. (2004) The cohesion protein ORD is required for homolog bias during meiotic recombination. Journal of Cell Biology: 164:819-829.
Balicky, E.M., Young, L., Orr-Weaver, T.L. and Bickel, S.E. (2004) A proposed role for the Polycomb Group protein dRING in meiotic sister-chromatid cohesion. Chromosoma: 112:231-239.
Jeffreys, C.A, Burrage, P.S, and Bickel, S.E. (2003) A model system for increased meiotic nondisjunction in older oocytes. Current Biology 13:498-503.
Balicky, E.M., Endres, M.W. Lai, C, and Bickel, S.E. (2002) Meiotic cohesion requires accumulation of ORD on chromosomes prior to condensation. Mol. Biol. Cell: 21:3890-3900.
Bickel, S.E., Orr-Weaver, T.L. and Balicky, E.M. (2002) The sister-chromatid cohesion protein ORD is required for chiasma maintenance in Drosophila oocytes. Current Biology: 12:925-929.
Ryan Calsbeek

Goedert, D., Calsbeek, R. (2019) Experimental Evidence That Metamorphosis Alleviates Genomic Conflict. The American Naturalist. Sep;194(3):356-366.
Calsbeek, R. and Careau, V. (2019) Survival of the fastest: tradeoffs structure the multivariate optimization of performance phenotypes. Medicine and Science in Sports and Exercise
Brady, S.P., Zamora-Camacho, F.J., Eriksson, F.A.A., Goedert, D., Comas, M., Calsbeek, R. (2019) Fitter frogs from polluted ponds: The complex impacts of human-altered environments. Evolutionary Applications. Jan 18;12(7):1360-1370
Erritouni, Y.R., Reinke, B.A., Calsbeek, R. (2018) A novel body coloration phenotype in Anolis sagrei: Implications for physiology, fitness, and predation. PLoS One. Dec 31;13(12):e0209261
Reinke, B.A., Erritouni, Y., Calsbeek, R. (2018) Maternal allocation of carotenoids to eggs in an Anolis lizard. Comparative Biochemistry and Physiology Part A: Molecular Integrative Physiology. Apr;218:56-62.
Logan, M.L., Duryea, M.C., Molnar, O.R., Kessler, B., and Calsbeek, R. (2016) Spatial variation in climate mediates gene flow across an island archipelago. Evolution 10: 2395-2403
Calsbeek, R., McPeek, M.A. (2016) On the utility of meta-analyses in the study of natural selection. Journal of Evolutionary Biology. Oct;29(10):1907-1908.
Calsbeek, R., Duryea, M.C., Goedert, D., Bergeron, P., and Cox, R.M. (2015) Intralocus sexual conflict, adaptive sex allocation, and the heritability of fitness. Journal of Evolutionary Biology 28: 1975-1985.
Calsbeek, R., and Kuchta S.R. (2011) Predator mediated selection and impact of developmental stage on viability in wood frog tadpoles (Rana sylvatica). BMC Evolutionary Biology 11: 353-364.
Calsbeek, R., and Cox, R.M. (2010) Experimentally assessing the relative importance of predation and competition as agents of natural selection. Nature 465: 613-616.
Celia Y. Chen

Please visit the following PubMed link for a list of publications: https://www.ncbi.nlm.nih.gov/pubmed/?term=chen+c+y+dartmouth
Dijkstra, J.A., K.L. Buckman, D. Ward, D.W. Evans, M. Dionne, C.Y. Chen. 2013. Experimental and natural warming elevates mercury concentrations in estuarine fish. PLOS ONE 8(3)e58401.
Schartup, A.T., R.P. Mason, P.H. Balcolm, T.A. Hollweg, C.Y. Chen. 2013. Methylmercury production in pristine and anthropogenically impacted sediments. Environmental Science and Technology 2013; 47:695-700. (PMCID in process)
Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Schmitt, C.V., Serrell, N.S., and Sunderland, E.M. Sources to Seafood: Mercury Pollution in the Marine Environment. Hanover, NH: Toxic Metals Superfund Research Program, Dartmouth College 2012.
Driscoll, C.T., Chen, C.Y., Hammerschmidt, C.R., Mason, R.P., Gilmour, C.C., Sunderland, E.M., Greenfield, B.K., Buckman, K.L., Lamborg, C. H. 2012. Nutrient supply and mercury dynamics in marine ecosystems: A conceptual model. Environmental Research 119: 118-131.
Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Serrell, N.S., and Sunderland, E.M. 2012. Marine mercury fate: From sources to seafood consumers. Environmental Research 119:1-2.
Glaholt, S.T., Chen, C.Y., Demidenko, E., Bugge, D.M., Folt, C. L., Shaw, J.R. 2012. Adaptive iterative design (AID): A novel approach for evaluating the effects of multiple stressor on aquatic organisms. Science of the Total Environment 432: 57-64. doi:10.1016/j.scitotenv.2012.05.074
Jackson, B.P., Bugge, D., Ranville, J.F., Chen, C.Y. 2012. Bioavailability toxicity, and Bioaccumulation of quantum dot nanoparticles to the amphipod Leptocheirus plumulosus. Environmental Science and Technology 46: 5550-5556.
Sunderland, E., Amirbahman, A., Burgess, N.M., Dalziel, J., Harding, G., Jones, S.H., Kamai, E., Karagas, M.R., Shi, X., Chen, C.Y. 2012. Mercury sources and fate in the Gulf of Maine. Environmental Research 119:27-41.
Brooks, R.T., Eggert, S.L., Nislow, K.H., Kolka, R.K., Chen, C.Y., Ward, D.M. 2012. Preliminary assessment of mercury accumulation in Massachusetts and Minnesota seasonal forest pools. Wetlands 32: 653-663. DOI 10.1007/s13157-012-0298-4.
Ward, D.M., Mayes, B, Sturup, S. Folt, C.L., Chen, C.Y. 2012. Assessing element-specific patterns of bioaccumulation across New England lakes. Science of the Total Environment 421-422: 230-237.
Chen, C.Y., Driscoll, C.T., Kamman, N.C. Mercury Hotspots in Freshwater Ecosystems: Drivers, Processes, and Patterns. 2012. In: Mercury in the Environment: Pattern and Process, (ed.) M. Bank, University of California Press, pp. 143-166.
Chen, C., Kamman, N., Williams, J., Bugge, D., Taylor, V., Jackson, B., Miller, E. 2012. Spatial and temporal variation in mercury bioaccumulation by zooplankton in Lake Champlain. Environmental Pollution 161: 343-349.
Miller, E.K., Chen, C., Kamman, N., Shanley, J., Chalmers, A., Jackson, B., Taylor, V., Smeltzer, E., Stangel, P., Shambaugh, A. 2011. Mercury in the pelagic food web of Lake Champlain. Ecotoxicology (in press) DOI 10.1007/s10646-011-0829-4.
Fisher, N.S. and Chen, C.Y. 2011. Interdisciplinary approaches for addressing marine contamination issues. Environmental Conservation 38: 187-198.
Williams, J.J., J. Dutton, C.Y. Chen, N.S. Fisher. 2010. Metal (As, Cd, Hg, and CH3Hg) bioaccumulation from water and food by the benthic amphipod Leptocheirus plumulosus. Environ. Toxicol. Chem. 29: 1755-1761.
Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2010. Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams. Environ. Sci. Techol. 44: 3245-3251.
Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2009. Rapid, efficient growth reduces mercury concentrations in stream-dwelling Atlantic salmon. Trans. Amer. Fish. Soc. 139:1-10. DOI: 10.1577/T09-032.1.
Chen, C.Y. 2009. China's mercury problem: A sleeping giant? Woodrow Wilson International Center for Scholars. China Environment Series 2008/9 10:57-62.
Chen, C., Dionne, M., Mayes, B., Ward, D., Sturup, S., Jackson, B. 2009. Mercury bioavailability and bioaccumulation in estuarine food webs in the Gulf of Maine. Environ. Sci. Technol. 43: 1804-1810. DOI: 10.1021/es8017122.
Evers, D.C., Mason, R.P., Kamman, N.C., Chen, C.Y., Bogomolni, A.L., Taylor, D.L., Hammerschmidt, C.R., Jones, S.H., Burgess, N.M., Munney, K. Parson, K.C. 2008. An integrated mercury monitoring program for temperate estuarine and marine ecosystems on the North American Atlantic Coast. Ecohealth 5: 426-441. DOI: 10.1007/s10393-008-0205-x
Chen, C., Amirbahman, A., Fisher, N., Harding, G., Lamborg, C., Nacci, D., Taylor, D. 2008. Methylmercury in marine ecosystems: spatial patterns and processes of production, bioaccumulation, and biomagnification. Ecohealth 5: 399-408. DOI: 10.1007/s10393-008-0201-1.
Chen, C.Y., Serrell, N., Evers, D.C., Fleishman, B.J., Lambert, K.F., Weiss, J., Mason, R.P., Bank, M.S. 2008. Methylmercury in marine ecosystems: From sources to seafood consumers – A workshop report. Environ. Health Perspectives 116: 1706-1712. DOI:10.1289/ehp.1121.
Chen, C.Y., Hathaway, K.M., Thompson, D.G., Folt, C.L. 2008. Multiple stressor effects of Release, pH, and food on the zooplankton, Simocephalus vetulus and larval amphibian, Rana pipiens. Ecotoxicol. and Environ. Safety 71: 209-218.
Chen, C.Y., Pickhardt, P.C., Xu, M.Q., Folt, C.L. 2008. Mercury and arsenic bioaccumulation and eutrophication in Baiyandian Lake, China. Water, Air, Soil Poll. DOI 10.1007/s11270-007-9585-8.
Karimi, R., Chen C.Y., Fisher N.S., Pickhardt P.C., Folt C.L. 2007. Stoichiometric controls of mercury dilution by growth. Proceedings of the National Academy of Sciences 104:7477-7482.
Evers, D.C., Han, Y.J., Driscoll, C.T., Kamman, N.C., Goodale, M.W., Lambert, K.F., Holsen, T.M., Chen, C.Y., Clair, T.A., Butler, T. 2007. Identification and evaluation of biological hotspots of mercury in the Northeastern U.S. and Eastern Canada. Bioscience 57:29-43.
Driscoll, C.T., Han, Y.J., Chen, C.Y., Evers, D.C., Lambert, K.F., Holsen, T., Kamman, N.C., Munson, R. 2007. Mercury contamination in remote forest and aquatic ecosystems in the Northeastern U.S.: sources, transformations and management options. Bioscience 57:17-28.
Chen, C.Y., Stemberger, R.S., Kamman, N.C., Mayes, B.,M., Folt, C.L. 2005. Patterns of Hg bioaccumulation and transfer in aquatic food webs across multi-lake studies in the Northeast US. Ecotoxicology 14:135-147.
Chen, C.Y., Folt, C.L. 2005. High plankton biomass reduces mercury biomagnification. Environ. Sci. Technol. 39: 115-121.
Pickhardt, P.C., Folt, C.L., Chen, C.Y., Klaue, B. and Blum, J.D. 2002. Algal blooms reduce the uptake of methylmercury in freshwater food webs. Proceedings of the National Academy of Sciences 99: 4419-4423.
Kathryn L. Cottingham

Ghosh, S., K.L. Cottingham, and D.C. Reuman. 2021. Species relationships in the extremes and their influence on community stability. Philosophical Transactions of the Royal Society B 376(1835):20200343. DOI: 10.1098/rstb.2020.0343
Walter, J.A., L.G. Shoemaker, N.K. Lany, M.C.N. Castorani, S.B. Fey, J.C. Dudney, L. Gherardi, C. Portales-Reyes, A.L. Rypel, K.L. Cottingham, K.N. Suding, D.C. Reuman, and L.M. Hallett. 2021. The spatial synchrony of species richness and its relationship to ecosystem stability. Ecology 102(11):e03486. DOI: 10.1002/ecy.3486
Trout-Haney, J.V. and K.L. Cottingham. 2021. Microcystins in planktonic and benthic communities of Greenlandic lakes. Ecosphere 12(6):e03539. DOI: 10.1002/ecs2.3539
Rubin, H.J., D.A. Lutz, B.G. Steele, K.L. Cottingham, K.C. Weathers, M.J. Ducey, M. Palace, K.M. Johnson, and J.W. Chipman. 2021. Remote sensing of lake water clarity: performance and transferability of both historical algorithms and machine learning. Remote Sensing 13(8):1434. DOI 10.3390/rs13081434
Cottingham, K.L., K.C. Weathers, H.A. Ewing, M.L. Greer, and C.C. Carey. 2021. Predicting the effects of climate change on freshwater cyanobacterial blooms requires consideration of the complete cyanobacterial life cycle. Journal of Plankton Research 43(1):10-19. DOI 10.1093/plankt/fbaa059
Trout-Haney, J.V., A.L. Ritger, and K.L. Cottingham. 2021. Benthic cyanobacteria of the genus Nostoc are a source of microcystins in Greenlandic lakes and ponds. Freshwater Biology 66:266-277. DOI 10.1111/fwb.13636
Cottingham, K.L., H.A. Ewing, M.L. Greer, C.C. Carey, and K.C. Weathers. 2015. Cyanobacteria as drivers of lake nitrogen and phosphorus cycling. Ecosphere 6(1):1. Available at http://dx.doi.org/10.1890/ES14-00174.1.
Patrick Dolph

Roles of the Drosophila SK channel (dSK) in courtship memory. Abou Tayoun AN, Pikielny C, Dolph PJ. PLoS One. 2012;7(4):e34665. doi: 10.1371/journal.pone.0034665. Epub 2012 Apr 11. PMID: 22509342 [PubMed - indexed for MEDLINE]
Cathepsin proteases mediate photoreceptor cell degeneration in Drosophila. Kinser RD, Dolph PJ. Neurobiol Dis. 2012 Jun;46(3):655-62. doi: 10.1016/j.nbd.2012.03.004. Epub 2012 Mar 9. PMID: 22426392[Pu bMed - indexed for MEDLINE]
Gavin, B A, M J Dolph, N R Deleault, J C Geoghegan, V Khurana, M B Feany, P J Dolph, and S Supattapone, “Accelerated Accumulation of Misfolded Prion Protein and Spongiform Degeneration in a Drosophila Model of Gerstmann-Sträussler-Scheinker Syndrome,” The Journal of Neuroscience , 26:48 (November 2006) 12408-12414.
Alternative pathway of cell death in Drosophila mediated by NF-κB transcription factor Relish. Chinchore Y, Gerber GF, Dolph PJ. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E605-12. doi: 10.1073/pnas.1110666109. Epub 2012 Feb 10. PMID: 22328149 [PubMed - indexed for MEDLINE]
Characterization of two dominant alleles of the major rhodopsin-encoding gene ninaE in Drosophila. Mitra A, Chinchore Y, Kinser R, Dolph PJ. Mol Vis. 2011;17:3224-33. Epub 2011 Dec 14. PMID: 22194648 [PubMed - indexed for MEDLINE]
The Drosophila SK channel (dSK) contributes to photoreceptor performance by mediating sensitivity control at the first visual network. Abou Tayoun AN, Li X, Chu B, Hardie RC, Juusola M, Dolph PJ. J Neurosci. 2011 Sep 28;31(39):13897-910. doi: 10.1523/JNEUROSCI.3134-11.2011. PMID: 21957252 [PubMed - indexed for MEDLINE]
Cell-autonomous requirement for DNaseII in nonapoptotic cell death. Bass BP, Tanner EA, Mateos San Martín D, Blute T, Kinser RD, Dolph PJ, McCall K. Cell Death Differ. 2009 Oct;16(10):1362-71. doi: 10.1038/cdd.2009.79. Epub 2009 Jun 26. PMID: 19557011 [PubMed - indexed for MEDLINE]
Accumulation of rhodopsin in late endosomes triggers photoreceptor cell degeneration. Chinchore Y, Mitra A, Dolph PJ. PLoS Genet. 2009 Feb;5(2):e1000377. doi: 10.1371/journal.pgen.1000377. Epub 2009 Feb 13. PMID: 19214218 [PubMed - indexed for MEDLINE]

The role of carcinine in signaling at the Drosophila photoreceptor synapse. Gavin BA, Arruda SE, Dolph PJ. PLoS Genet. 2007 Dec;3(12):e206. PMID: 18069895 [PubMed - indexed for MEDLINE]

Accelerated accumulation of misfolded prion protein and spongiform degeneration in a Drosophila model of Gerstmann-Sträussler-Scheinker syndrome. Gavin BA, Dolph MJ, Deleault NR, Geoghegan JC, Khurana V, Feany MB, Dolph PJ, Supattapone S. J Neurosci. 2006 Nov 29;26(48):12408-14. PMID: 17135402 [PubMed - indexed for MEDLINE]
An essential role for endocytosis of rhodopsin through interaction of visual arrestin with the AP-2 adaptor. Orem NR, Xia L, Dolph PJ. J Cell Sci. 2006 Aug 1;119(Pt 15):3141-8. Epub 2006 Jul 11. PMID: 16835270 [PubMed - indexed for MEDLINE]
Molecular cloning of the pawn locus from Drosophila melanogaster. Arruda SE, Dolph PJ. Gene. 2003 May 22;310:169-73. PMID: 12801644 [PubMed - indexed for MEDLINE]

Post-transcriptional suppression of pathogenic prion protein expression in Drosophila neurons. Deleault NR, Dolph PJ, Feany MB, Cook ME, Nishina K, Harris DA, Supattapone S. J Neurochem. 2003 Jun;85(6):1614-23. PMID: 12787080
Epitope masking of rhabdomeric rhodopsin during endocytosis-induced retinal degeneration. Orem NR, Dolph PJ. Mol Vis. 2002 Dec 2;8:455-61. PMID: 12486400
Arrestin: roles in the life and death of retinal neurons. Dolph PJ. Neuroscientist. 2002 Aug;8(4):347-55. Review. PMID: 12194503
Orem, N R, and P J Dolph, “Loss of the Phospholipase C Gene Product Induces Massive Endocytosis of Rhodopsin and Arrestin in Drosophila Photoreceptors,” Vision Research , 42:4 (February 2002) 497-505.
The formation of stable rhodopsin-arrestin complexes induces apoptosis and photoreceptor cell degeneration. Alloway PG, Howard L, Dolph PJ. Neuron. 2000 Oct;28(1):129-38. PMID: 11086989
A role for the light-dependent phosphorylation of visual arrestin. Alloway PG, Dolph PJ. Proc Natl Acad Sci U S A. 1999 May 25;96(11):6072-7. PMID: 10339543
An eye-specific G beta subunit essential for termination of the phototransduction cascade. Dolph PJ, Man-Son-Hing H, Yarfitz S, Colley NJ, Deer JR, Spencer M, Hurley JB, Zuker CS. Nature. 1994 Jul 7;370(6484):59-61. PMID: 8015606
Arrestin function in inactivation of G protein-coupled receptor rhodopsin in vivo. Dolph PJ, Ranganathan R, Colley NJ, Hardy RW, Socolich M, Zuker CS. Science. 1993 Jun 25;260(5116):1910-6. PMID: 8316831
olation of a novel visual-system-specific arrestin: an in vivo substrate for light-dependent phosphorylation. LeVine H 3rd, Smith DP, Whitney M, Malicki DM, Dolph PJ, Smith GF, Burkhart W, Zuker CS. Mech Dev. 1990 Dec;33(1):19-25. PMID: 2129011
Translation by the adenovirus tripartite leader: elements which determine independence from cap-binding protein complex. Dolph PJ, Huang JT, Schneider RJ. J Virol. 1990 Jun;64(6):2669-77. Erratum in: J Virol 1990 Aug;64(8):4042. PMID: 1692346

Secondary structure analysis of adenovirus tripartite leader. Zhang Y, Dolph PJ, Schneider RJ. J Biol Chem. 1989 Jun 25;264(18):10679-84. PMID: 2732243
The adenovirus tripartite leader may eliminate the requirement for cap-binding protein complex during translation initiation. Dolph PJ, Racaniello V, Villamarin A, Palladino F, Schneider RJ. J Virol. 1988 Jun;62(6):2059-66. PMID: 2835510
Characterization of a gene cluster for exopolysaccharide biosynthesis and virulence in Erwinia stewartii. Dolph PJ, Majerczak DR, Coplin DL. J Bacteriol. 1988 Feb;170(2):865-71. PMID: 2828330
Diane Gilbert-Diamond

Renier TJ, Yeum D, Emond JA, Lansigan R, Ballarino G, Carlson D, Loos R, Gilbert-Diamond D. (2023) Elucidating pathways to pediatric obesity: A study evaluating obesity polygenic risk scores related to appetitive traits in children. International Journal of Obesity. doi:10.1038/s41366-023-01385-3
Brand J, Masterson TD, Emond JA, Lansigan RK, Gilbert-Diamond D. (2020) Measuring attentional bias to food cues in young children using a visual search task: an eye-tracking study. Appetite. 148: 104610. PMCID: PMC7995328.
Gilbert-Diamond D, Emond JA, Lansigan RK, Kelley W, Heatherton TF, Sargent JD. (2016) Television food advertisement exposure and FTO rs9939609 genotype in relation to excess consumption in children. Int J Obesity. 41(1): 23-29. PMCID: PMC5209258.
Rapuano KM, Zieselman AL, Kelley WM, Sargent JD, Heatherton TF, Gilbert-Diamond D. (2017) Genetic risk for obesity predicts nucleus accumbens size and responsivity to real-world food cues. Proc Natl Acad Sci USA. 114(1): 160-165. PMCID: PMC5224347
Erik Griffin

Barbieri S, Ravi A, Griffin EE, Gotta M (2022) Modeling protein gradients in Caenorhabditis elegans embryos reveals that the PLK-1 gradient relies on weakly coupled reaction-diffusion mechanisms. PNAS 119(11):e2114205119.
Kim A, Griffin EE. (2020) PLK1 regulation of asymmetric cell division in the early C. elegans embryo. Frontiers in Cell and Developmental Biology. 8:632253.
Fan X, De Henau S, Feinstein J, Miller SI, Han B, Frokjaer-Jensen C, Griffin EE (2019) SapTrap Assembly of Caenorhabditis elegans MosSCI transgene vectors. G3. 10(2): 635 - 644.
Wu Y, Han B, Smith J, Singh A, Griffin EE (2019) Single molecule dynamics of the P granule scaffold MEG-3 in the C. elegans zygote. Molecular Biology of the Cell, 30:333-345.
Gauvin TJ, Han B, Sun MJ, Griffin EE (2018) PIE-1 translation in the germline lineage contributes to PIE-1 asymmetry in the early C. elegans embryo. G3, 8:3791-3801.
Wu Y, Han B, Li Y, Munro E, Odde DJ, Griffin EE (2018) Rapid diffusion-state switching underlies stable cytoplasmic gradients in the Caenorhabditis elegans zygote. PNAS, 115:E8440-E8449.
Han B, Antokowiak KR, Fan X, Rutigliano M, Ryder SP, Griffin EE (2018) Polo-like Kinase couples cytoplasmic protein gradeints in the C. elegans zygote. Current Biology. 28: 60-69.
Wu Y, Griffin EE (2016) Regulation of Cell Polarity by PAR-1/MARK Kinase. Current Topics in Developmental Biology, 123:365-397.
Wu Y, Zhang H, Griffin EE (2015) Coupling between cytoplasmic concentration gradients through local control of protein mobility in the Caenorhabditis elegans zygote. Molecular Biology of the Cell, 26:2963-2970.
Griffin EE (2015) Cytoplasmic localization and asymmetric division in the early embryo of Caenorhabditis elegans.Wiley Interdisciplinary Reviews: Developmental Biology, 4: 267-282.
Griffin EE, Odde DJ, Seydoux G (2011) Regulation of the MEX-5 gradient by a spatially separated kinase/phosphatase cycle. Cell , Vol 146: 955-968.
Motegi F, Zonies S, Hao Y, Cuenca AA, Griffin EE, Seydoux G (2011) Microtubules induce self-organization of polarized PAR domains in Caenorhabditis elegans zygotes. Nature Cell Biology, Published online October 9, 2011.
Griffin EE, Chan DC (2006) Domain interactions within Fzo1 oligomers are essential for mitochondrial fusion. Journal of Biological Chemistry, 281: 16599-16606.
Griffin EE, Detmer SA, Chan DC (2006) Molecular mechanism of mitochondrial fusion. Biochimica et Biophysica Acta - Molecular Cell Reviews, 1763:482-489.
Griffin EE, Graumann J, Chan DC (2005) The WD40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondria. Journal of Cell Biology, 170: 237-248.
Mary Lou Guerinot

Smieska L, Guerinot ML, Olson Hoal K, Reid M, Vatamaniuk O. 2023. Synchrotron science for sustainability: life cycle of metals in the environment. Metallomics. Aug 1;15(8):mfad041. doi: 10.1093/mtomcs/mfad041. PMID: 37370221

Akmakjian, G.Z., Riaz, N., Guerinot, M.L. (2021) Photoprotection during iron deficiency is mediated by the bHLH transcription factors PYE and ILR3. Proc Natl Acad Sci U S A. Oct 5;118(40):e2024918118. doi: 10.1073/pnas.2024918118. PMID: 34580211

Lee, S., Lee, J., Ricachenevsky, F.K., Punshon, T., Tappero, R., Salt, D.E., Guerinot, M.L. (2021) Redundant roles of four ZIP family members in zinc homeostasis and seed development in Arabidopsis thaliana. Plant J. Nov;108(4):1162-1173. doi: 10.1111/tpj.15506. Epub 2021 Oct 8. PMID: 34559918

Xu L, Dong Z, Chiniquy D, Pierroz G, Deng S, Gao C, Diamond S, Simmons T, Wipf HM, Caddell D, Varoquaux N, Madera MA, Hutmacher R, Deutschbauer A, Dahlberg JA, Guerinot ML, Purdom E, Banfield JF, Taylor JW, Lemaux PG, Coleman-Derr D. (2021) Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics. Nat Commun. 2021 May 28;12(1):3209. doi: 10.1038/s41467-021-23553-7. PMID: 34050180

Ricachenevsky, F.K., Punshon, T., Salt, D.E., Fett, J.P., Guerinot, M.L. (2021) Arabidopsis thaliana zinc accumulation in leaf trichomes is correlated with zinc concentration in leaves. Sci Rep. Mar 5;11(1):5278. doi: 10.1038/s41598-021-84508-y. PMID: 33674630

Liu, H., Long, S.X., Pinson, S.R.M., Tang, Z., Guerinot, M.L., Salt, D.E., Zhao, F.J., Huang, X.Y. (2021) Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome. Front Genet. Jan 25;12:638555. doi: 10.3389/fgene.2021.638555. eCollection 2021. PMID: 33569081
Riaz, N., Guerinot, M.L. (2021) All Together Now: Regulation of the Iron Deficiency Response. J Exp Bot. Jan 15:erab003. doi: 10.1093/jxb/erab003. Online ahead of print. PMID: 33449088
Ruang-Areerate, P., Travis, A.J., Pinson, S.R.M., Tarpley, L., Eizenga, G.C., Guerinot, M.L., Salt, D.E., Douglas, A., Price, A.H., Norton, G.J. (2020) Genome-wide association mapping for grain manganese in rice (Oryza sativa L.) using a multi-experiment approach. Heredity (Edinb). Nov 24. doi: 10.1038/s41437-020-00390-w. PMID: 33235293
Mu, S., Yamaji, N., Sasaki, A., Luo, L., Du, B., Che, J., Shi, H., Zhao, H., Huang, S., Deng, F., Shen, Z., Guerinot, M.L., Zheng, L., Ma, J.F. (2020) A transporter for delivering zinc to the developing tiller bud and panicle in rice. Plant J. Nov 9. doi: 10.1111/tpj.15073. PMID: 33169459
Fischer, S., Sánchez-Bermejo, E., Xu, X., Flis, P., Ramakrishna, P., Guerinot, M.L., Zhao, F.J., Salt, D.E. (2020) Targeted expression of the arsenate reductase HAC1 identifies cell-type specificity of arsenic metabolism and transport in plant roots. J Exp Bot. Oct 10;72(2):415-25. doi: 10.1093/jxb/eraa465. PMID: 33038235
Kim, S.A., LaCroix, I.S., Gerber, S.A., Guerinot, M.L. (2019) The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI. Proc Natl Acad Sci U S A. Dec 10;116(50):24933-24942. doi: 10.1073/pnas.1916892116. . PMID: 31776249
Huang, X.Y., Liu, H., Zhu, Y.F., Pinson, S.R.M., Lin, H.X., Guerinot, M.L., Zhao, F.J., Salt, D.E. (2019) Natural variation in a molybdate transporter controls grain molybdenum concentration in rice. New Phytol. Oct 19. doi: 10.1111/nph.15546. PMID: 30339276
Nachman, K.E., Punshon, T., Rardin, L., Signes-Pastor, A.J., Murray, C.J., Jackson, B.P., Guerinot, M.L., Burke, T.A., Chen, C.Y., Ahsan, H., Argos, M., Cottingham, K.L., Cubadda, F., Ginsberg, G.L., Goodale, B.C., Kurzius-Spencer, M., Meharg, A.A., Miller M.D., Nigra, A.E., Pendergrast, C.B., Raab, A., Reimer, K., Scheckel, K.G., Schwerdtle, T., Taylor, V.F., Tokar, E.J., Warczak, T.M. and Karagas, M.R. (2018) Opportunities and Challenges for Dietary Arsenic Intervention. Environ Health Perspect. Aug;126(8):84503. doi: 10.1289/EHP3997. PMID: 30235424
Ricachenevsky, F.K., Punshon, T., Lee, S., Oliveira, B.H.N., Trenz, T.S., Maraschin, F.D.S., Hindt, M.N., Danku, J., Salt, D.E., Fett, J.P. and Guerinot, M.L. (2018) Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7. Front Plant Sci. Jul 3;9:865. doi: 10.3389/fpls.2018.00865. eCollection 2018. PMID: 30018622
Chu, H.H., Car, S., Socha, A.L., Hindt, M.N., Punshon, T. and Guerinot, M.L. (2017) The Arabidopsis MTP8 transporter determines the localization of manganese and iron in seeds. Sci Rep. Sep 8;7(1):11024. doi: 10.1038/s41598-017-11250-9. PMID: 28887568
Hindt, M.N., Akmakjian, G.Z., Pivarski, K.L., Punshon, T., Baxter, I., Salt, D.E. and Guerinot, M.L. (2017) BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana. Metallomics. 2017 Jul 19;9(7):876-890. doi: 10.1039/c7mt00152e. PMID: 28620661
Punshon, T., Jackson, B.P., Meharg, A.A., Warczak, T., Scheckel, K. and Guerinot, M.L. (2017) Understanding arsenic dynamics in agronomic systems to predict and prevent uptake by crop plants. Sci. Total Environ. Mar 1;581-582:209-220. doi: 10.1016/j.scitotenv.2016.12.111. Epub 2016 Dec 30. Review. PMID: 28043702
Huang, X.Y., Deng, F., Yamaji, N., Pinson, S.R., Fujii-Kashino, M., Danku, J., Douglas, A., Guerinot, M.L., Salt, D.E., Ma, J.F. (2016) A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Nat. Commun. 2016 Jul 8;7:12138. doi: 10.1038/ncomms12138. PMID:27387148
Mary, V., Schnell Ramos, M., Gillet, C., Socha, A.L., Giraudat, J., Agorio, A., Merlot, S., Clairet, C., Kim, S.A., Punshon, T,., Guerinot, M.L., Thomine, S. (2015) Bypassing Iron Storage in Endodermal Vacuoles Rescues the Iron Mobilization Defect in the natural resistance associated-macrophage protein3natural resistance associated-macrophage protein4 Double Mutant. Plant Physiol. 2015 Sep;169(1):748-59. doi: 10.1104/pp.15.00380. Epub Jul 31. PMID: 26232490
Stanton, B.A., Caldwell, K., Congdon, C.B., Disney, J., Donahue, M., Ferguson, E., Flemings, E., Golden, M., Guerinot, M.L., Highman, J., James, K., Kim, C., Lantz, R.C., Marvinney, R.G., Mayer, G., Miller, D., Navas-Acien, A., Nordstrom, D.K., Postema, S., Rardin, L., Rosen, B., SenGupta, A., Shaw, J., Stanton, E., Susca, P. (2015) MDI Biological Laboratory Arsenic Summit: Approaches to Limiting Human Exposure to Arsenic. Curr Environ. Health Rep. Sep;2(3):329-37. doi: 10.1007/s40572-015-0057-9. PMID: 26231509
Zhai, Z., Gayomba, S.R., Jung, H.I., Vimalakumari, N.K., Piñeros, M., Craft, E., Rutzke, M.A., Danku, J., Lahner, B., Punshon, T., Guerinot, M.L., Salt, D.E., Kochian, L.V., Vatamaniuk, O.K. (2014) OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis. Plant Cell. May 27;26(5):2249-2264. PMID: 24867923
Socha, A. and M.L. Guerinot. (2014) Mn-euvering manganese: the role of transporter gene family members in manganese uptake and mobilization in plants. Front. Plant Sci. 5:106. doi: 10.3389/fpls.2014.00106
Norton, G.J., Douglas, A., Lahner, B., Yakubova, E., Guerinot, M.L., Pinson, S.R., Tarpley, L., Eizenga, G.C., McGrath, S.P., Zhao, F.J., Islam, M.R., Islam, S., Duan, G., Zhu, Y., Salt, D.E., Meharg, A.A., Price, A.H. (2014) Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites. PLoS One. Feb 25;9(2):e89685. doi: 10.1371/journal.pone.0089685. eCollection. PMID: 24586963
Hong, S., S.A. Kim, M.L. Guerinot and C.R. McClung. 2013. Reciprocal interaction of the circadian clock with the Fe homeostasis network in Arabidopsis thaliana. Plant Physiol. 163: 893-903. PMCID: PMC3561027
Schroeder, J.I., E. Delhaize, W.B. Frommer, M.L. Guerinot, M.J. Harrison, L. Herrera-Estrella, T. Horie, L.V. Kochian, R. Munns, N.K. Nishizawa, Y.-F. Tsay and D. Sanders. 2013. Using membrane transporters to improve crops for sustainable food production. Nature 497: 60-66.
Hosmani, P.S., T. Kamiya, J. Danku S. Naseer, N. Geldner, M.L. Guerinot and D.E. Salt. 2013. A dirigent-domain containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root. Proc. Natl. Acad. Sci. U.S.A. 110:14498-503
Zhang, M, S.R.M. Pinson, L. Tarpley, X. Huang, B. Lahner, E. Yakubova, M.L. Guerinot, and D.E. Salt. 2013. Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain. Theor. Appl. Genet. 10.1007/s00122-013-2207-5
Palmer, C., M.N. Hindt, H. Schmidt, S. Clemens and M.L. Guerinot. 2013. MYB10 and MYB72 Are required for growth under iron-limiting conditions. PLoS Genet. 9(11):e1003953
Bing He

Hanqing Guo, Shicheng Huang, Bing He. (2022) Evidence for a role of the lateral ectoderm in Drosophila mesoderm invagination. Front. Cell Dev. Biol.. doi: 10.3389/fcell.2022.867438.

https://pubmed.ncbi.nlm.nih.gov/35547820/

Wei Chen, Bing He. (2022) Actomyosin activity-dependent apical targeting of Rab11 vesicles reinforces apical constriction. J Cell Biol. 221(6). doi: 10.1083/jcb.202103069.

https://pubmed.ncbi.nlm.nih.gov/35404399/

Hanqing Guo, Michael Swan, Bing He. (2022) Optogenetic inhibition of actomyosin reveals mechanical bistability of the mesoderm epithelium during Drosophila mesoderm invagination. Elife 11:e69082. doi: 10.7554/eLife.69082.

https://pubmed.ncbi.nlm.nih.gov/35195065/

Melisa Fuentes, Bing He. (2022) The cell polarity determinant Dlg1 facilitates epithelial invagination by promoting tissue-scale mechanical coordination. Development. 149(6):dev200468. doi: 10.1242/dev.200468.

https://pubmed.ncbi.nlm.nih.gov/35302584/

Samuel Reed*, Wei Chen*, Victoria Bergstein, Bing He. (2022) Toll-Dorsal signaling regulates the spatiotemporal dynamics of yolk granule tubulation during Drosophila cleavage. Dev Biol. 481:64-74. doi: 10.1016/j.ydbio.2021.09.009. * These authors contributed equally.

https://pubmed.ncbi.nlm.nih.gov/34627795/

Bing He*, Adam Martin, Eric Wieschaus. (2016) Flow-dependent myosin recruitment during Drosophila cellularization requires zygotic dunk activity. Development 143(13):2417-30. * Corresponding author.

https://www.ncbi.nlm.nih.gov/pubmed/27226317

Bing He, Konstantin Doubrovinski, Oleg Polyakov, Eric Wieschaus (2014) Apical constriction drives tissue-scale hydrodynamic flow to mediate cell elongation. Nature 508(7496):392-6.

https://www.ncbi.nlm.nih.gov/pubmed/24590071

Oleg Polyakov, Bing He, Michael Swan, Joshua Shaevitz, Matthias Kaschube, Eric Wieschaus (2014). Passive mechanical forces control cell shape change during Drosophila ventral furrow formation. Biophysical Journal 107(4):998-1010.

https://www.ncbi.nlm.nih.gov/pubmed/25140436

Bing He, Amy Caudy, Lance Parsons, Adam Rosebrock, Attilio Pane, Sandeep
Raj, Eric Wieschaus (2012) Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster. Genome Research 22(12):2507-19.

https://www.ncbi.nlm.nih.gov/pubmed/22745230

Michael Gelbart, Bing He, Adam Martin, Stephan Thiberge, Eric Wieschaus, Matthias Kaschube (2012) Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis. PNAS 109 (47):19298-303.

https://www.ncbi.nlm.nih.gov/pubmed/23134725

Jianglan Liu, Yuting Zhao, Yujie Sun, Bing He, Changsong Yang, Tatyana Svitkina, Yale Goldman, Wei Guo (2012) Exo70 stimulates the Arp2/3 complex for lamellipodia formation and directional cell migration. Curr Biol 22 (16):1510-5.

https://www.ncbi.nlm.nih.gov/pubmed/22748316

Bing He and Wei Guo (2009) The exocyst complex in polarized exocytosis. Review. Current Opinion in Cell Biology 21(4):537-42.

https://www.ncbi.nlm.nih.gov/pubmed/19473826

Xiaoyu Zhang, Kelly Orlando, Bing He, Fengong Xi, Jian Zhang, Allison Zajac, Wei Guo (2008) Membrane association and functional regulation of Sec3 by phospholipids and Cdc42. Journal of Cell Biology 180(1):145-58.

https://www.ncbi.nlm.nih.gov/pubmed/18195105

Bing He, Fengong Xi, Xiaoyu Zhang, Jian Zhang, Wei Guo (2007) Exo70 interacts with phospholipids and mediates the targeting of the exocyst to the plasma membrane. The EMBO Journal 26(24):5167.

https://www.ncbi.nlm.nih.gov/pubmed/17717527

Bing He, Fengong Xi, Jian Zhang, Daniel TerBush, Xiaoyu Zhang, Wei Guo (2007) Exo70p mediates the secretion of specific exocytic vesicles at early stages of the cell cycle for polarized cell growth. Journal of Cell Biology 176(6):771-7.

https://www.ncbi.nlm.nih.gov/pubmed/17339375
Caitlin E. Hicks Pries

Hicks Pries, C.E., A. Angert, C. Castanha, B. Hilman, and M.S. Torn. 2020. Using Respiration Quotients to Track Changing Sources of Soil Respiration Seasonally and with Experimental Warming. Biogeosciences. https://doi.org/10.5194/bg-17-3045-2020.
Bailey V.L., C.E. Hicks Pries, K. Lajtha. 2019. What do we know about soil carbon destabilization? Environmental Research Letters. https://doi.org/10.1088/1748-9326/ab2c11.
Hicks Pries C.E., B.N. Sulman, C. West, C. O'Neill, E. Poppleton, R.C. Porras, C. Castanha, B. Zhu, D.B. Wiedemeir, M.S. Torn. 2018. Root litter decomposition slows with soil depth. Soil Biology & Biochemistry 125: 105-114. https://doi.org/10.1016/j.soilbio.2018.07.002
Hicks Pries C.E., Castanha C., Porras R.C., Phillips C., Torn M.S. 2018. The whole-soil carbon flux in response to warming: Technical comment response. Science 359 (6378). DOI: 10.1126/science.aao0457.
Rasmussen C., Heckman K., Wieder W., Keiluweit M., Lawrence C., Asefaw-Berhe A., Blankinship J., Crow S., Druhan J., Hicks Pries C., Marin-Spiotta E., Plante A., Schaedel C., Schimel J., Sierra J., Thompson A., Wagai R. 2018. Beyond clay: towards an improved set of variables for predicting soil organic matter content. Biogeochemistry 137 (3): 297-306. https://doi.org/10.1007/s10533-018-0424-3.
Castanha, C., Zhu B., Hicks Pries C.E., Georgiou K., Torn M.S. 2018. Compensatory effects of heating, rhizosphere, and depth on soil moisture mediate decomposition of root litter in a Mediterranean grassland ecosystem. Biogeochemistry 137:267–279. doi.org/10.1007/s10533-017-0418-6.
Porras R.C., Hicks Pries C.E., Torn M.S., Nico P.S. 2018. Synthetic iron (hydr)oxide-glucose associations in subsurface soil: Effects on decomposability of mineral associated carbon. Science of the Total Environment 613-614C, 342-351. DOI: 10.1016/j.scitotenv.2017.08.290.
Hicks Pries C.E., Castanha C., Porras R.C., Torn M.S. 2017. The whole-soil carbon flux in response to warming. Science 355 (6332), 1420-1423. DOI: 10.1126/science.aal1319
Hicks Pries C.E., Bird J.A., Castanha C., Hatton P.J., Torn M.S. 2017. Long term decomposition: The influence of litter type and soil horizon on retention of plant carbon and nitrogen in soils. Biogeochemistry 134 (1-2), 5-16.
Porras R.C., Hicks Pries C.E., McFarlane K.J., Torn M.S. 2017. Association with pedogenic iron and aluminum: Effects on soil organic matter storage and stability in temperate forest soils. Biogeochemistry 133 (3), 333-345.
Hicks Pries, C.E., E.A.G. Schuur, S.M. Natali, K.G. Crummer. 2016. Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra. Nature Climate Change doi:10.1038/nclimate2830
Hicks Pries, C.E., R.S.P. Logtestijn, E.A.G. Schuur, S.M. Natali, J.H.C. Cornelissen, R. Aerts, E. Dorrepaal. 2015. Decadal warming causes a consistent and persistent shift from heterotrophic to autotrophic respiration in contrasting permafrost ecosystems. Global Change Biology 21 (12), 4508-4519 doi: 10.1111/gcb.13032
Torn, M.S., A. Chabbi, P. Crill, P.J. Hanson, I.A. Janssens, Y. Luo, C.H. Pries, C. Rumpel, M.W.I. Schmidt , J. Six, M. Schrumpf, and B. Zhu. 2015. A call for international soil experiment networks for studying, predicting, and managing global change impacts. SOIL 1, 575-582 doi:10.5194/soil-1-575-2015
Natali, S.M., E.A.G. Schuur, E. E. Webb, C.E. Hicks Pries, K.G. Crummer. 2014. Permafrost degradation stimulates carbon loss from experimentally warmed tundra. Ecology 95 (3) http://dx.doi.org/10.1890/13-0602.1.
Hicks Pries, C.E., E.A.G. Schuur, J.G. Vogel, S.M. Natali. 2013. Moisture drives surface decomposition in thawing tundra. Journal of Geophysical Research-Biogeosciences, doi: 10.1002/jgrg.20089.
Hicks Pries, C.E., Schuur E.A.G., Crummer K.G. 2013. Thawing permafrost increases old soil and autotrophic respiration in tundra: Partitioning ecosystem respiration using δ13C and ∆14C. Global Change Biology 19 (2) doi: 10.1111/gcb.12058.
Hicks Pries, C.E., E.A.G. Schuur, and K.G. Crummer. 2012. Holocene Carbon Stocks and Carbon Accumulation Rates Altered in Soils Undergoing Permafrost Thaw. Ecosystems 12 (1): 162-173.
Hicks Pries, C.E. and J. Hughes. 2012. Inquiring into familiar objects: An inquiry-based approach to introduce scientific vocabulary. Science Activities 49 (2): 64-69.
Hicks Pries, C.E. and J. Hughes. 2011. Powering the Future: A wind turbine design competition. Science Scope 35 (4): 24-30.
Natali, S. M., E.A.G. Schuur, C. Trucco, C.E. Hicks Pries, K. G. Crummer, and A.F. Baron Lopez. 2011. Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra. Global Change Biology 17 (3): 1394-1407.
Robert Hill

Bame X and Hill RA. Mitochondrial network reorganization and transient expansion during oligodendrocyte generation Nature Communications. (2024) doi: 10.1038/s41467-024-51016-2 PMID: 39143079
Olveda GE, Barasa MN, and Hill RA. Microglial phagocytosis of single dying oligodendrocytes is mediated by CX3CR1 but not MERTK. Cell Reports. (2024) doi: 10.1016/j.celrep.2024.114385 PMID: 38935500
Chapman TW, Kamen Y, Piedra ET, and Hill RA. Oligodendrocyte maturation alters the cell death mechanisms that cause demyelination. The Journal of Neuroscience (2024) doi: 10.1523/JNEUROSCI.1794-23.2024 PMID: 38395617
Chapman TW, Olveda GE, Bame Xh, Pereira E, and Hill RA. Oligodendrocyte death initiates synchronous remyelination to restore cortical myelin patterns in mice. Nature Neuroscience (2023) doi: 10.1038/s41593-023-01271-1 PMID: 36928635, highlighted by Dartmouth News
Chapman TW and Hill RA. Myelin plasticity in adulthood and aging. Neuroscience Letters. (2020) 134645. PMID: 31765728
Hill RA#, Li AM, and Grutzendler J# Lifelong cortical myelin plasticity and age-related degeneration in the live mammalian brain. Nature Neuroscience. (2018) 21 (5), 683-695 PMID: 29556031, highlighted by Neuron, Nature Reviews Neuroscience and Yale News. #co-corresponding author
Hill RA, Damisah EC, Chen F, Kwan AC, and Grutzendler J. Targeted two-photon chemical apoptotic ablation of defined cell types in vivo. Nature Communications. (2017) 8,15837 PMID: 28621306.
Damisah EC*, Hill RA*, Tong L, Murray KN, and Grutzendler J. A fluoro-Nissl dye identifies pericytes as distinct vascular mural cells during in vivo brain imaging. Nature Neuroscience. (2017) 20(7), 1023-1032. PMID: 28504673, highlighted by Alzforum *co-first author
Hill RA*, Tong L*, Yuan P*, Murikinati S, Gupta S, and Grutzendler J. Regional blood flow in the normal and ischemic brain is controlled by arteriolar smooth muscle cell contractility and not by capillary pericytes. Neuron. (2015) 87(1), 95-110. PMID: 26119027, highlighted by Neuron, Alzforum, and ScienceNews. *co-first author
Hill RA and Grutzendler J. In vivo imaging of oligodendrocytes with sulforhodamine 101. Nature Methods. (2014) 11(11), 1082-1083. PMID: 25357236
Hill RA#, Patel KD, Goncalves CM, Grutzendler J, and Nishiyama A# Modulation of oligodendrocyte generation during a critical temporal window after NG2 cell division. Nature Neuroscience. (2014) 17(11), 1518-1527. PMID: 25262495, Faculty of 1000 recommended, #co-corresponding author
Schain AJ, Hill RA, and Grutzendler J. Label-free in vivo imaging of myelinated axons in health and disease with spectral confocal reflectance microscopy. Nature Medicine. (2014) 20(4), 443-449. PMID: 24681598, Faculty of 1000 recommended, highlighted by Nature Methods and Yale News
Richard Holmes

Holmes, R.T., and G. E. Likens. 2016. Hubbard Brook: The Story of a Forest Ecosystem. Yale University Press, New Haven. pp 1-270.
Townsend, A. K., E. G. Cooch, T. S. Sillett, N. L. Rodenhouse, R. T. Holmes, and M. S. Webster. 2016. Contrasting effects of warm springs and global climate cycles on population dynamics of a migratory songbird. Global Change Biology 22: 544-555 (doi: 10.1111/gcb.13053).
Marra, P. P., C. E. Studds, S. Wilson, T. S. Sillett, T. W. Sherry, and R. T. Holmes. 2015. Non-breeding season habitat quality mediates the strength of density-dependence for a migratory bird. 2015. Proceedings of the Royal Society London B 282, doi.org/10.1098/rspb.2015.0624.
Sherry, T.W., S. Wilson, S. Hunter, and R.T. Holmes. 2015. Impacts of nest predators and weather on reproductive success and population limitation in a long-distance migratory songbird. Journal of Avian Biology 46: 559- 569.
Lany, N.K., M. P. Ayres, E.E. Stange, T.S. Sillett, N.L. Rodenhouse, and R.T. Holmes. 2015. Breeding timed to maximize reproductive success for a migratory songbird: the importance of phenological asynchrony. Oikos, doi: 10.1111/oik.02412.
Townsend, A. K., T. S. Sillett, N. K. Lany, S. A. Kaiser, N. L. Rodenhouse, M.S. Webster, and R. T. Holmes. 2013. Warm springs, early lay dates, and double-brooding in a North American migratory songbird, the Black-throated Blue Warbler. PLoS One 8(4): e59467. doi:10.1371/
Swatantran, A., R. Dubayah, S. Goetz, M. Hofton, M. G. Betts, M. Sun, M. Simard, and R. T. Holmes. 2012. Mapping migratory bird prevalence using remote sensing data fusion. PLoS One 7(1): doi:10.1371/journal.pone.0028922
Holmes, R. T. 2011. Birds in forest ecosystems: long-term research on populations and community processes in the Hubbard Brook Experimental Forest. Forest Ecology and Management 262: 20-32
Goetz, S. J., S. Steinberg, M. Betts, R. T. Holmes, P. Doran, R. Dubayah, and M. Hofton. 2010. Lidar remote sensing variables predict breeding habitat of a Neotropical migrant bird. Ecology 91: 1569-1576
Faaborg, J., R.T. Holmes, et al. 2010. Recent advances in understanding migration systems of New World landbirds. Ecological Monographs, 80:3-48
Rodenhouse N.L., S.N. Matthews, K.P. McFarland, J.D. Lambert, L.R. Iverson, A. Prasad, T.S. Sillett, and R.T. Holmes. 2008. Potential effects of climate change on birds of the Northeast. Mitig. Adapt. Strat. Global Change 13: 517-540
Betts, M.G., N.L. Rodenhouse, T.S. Sillett, P.J. Doran, and R.T. Holmes. 2008. Dynamic occiupancy models reveal within-breeding season movement up a habitat quality gradient by a migrant songbird. Ecography 31: 592-600
Holmes, R.T. 2007. Understanding population change in migratory songbirds: long-term and experimental studies of Neotropical migrants in breeding and wintering areas. Ibis 149 (S2): 2-13
Johnson, M.D., T.W. Sherry, R.T. Holmes, and P.P. Marra. 2006. Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology 20: 1433-1444
Nagy, L.R., and R.T. Holmes. 2005. Food limits annual fecundity of a migratory songbird: an experimental study. Ecology 86: 675-681
Sillett, T.S., N.L. Rodenhouse, and R.T. Holmes. 2004. Experimentally reducing neighbor density affects reproduction and behavior of a migratory songbird. Ecology 85: 2467-2477
Rodenhouse, N.L., T.S. Sillett, P.J. Doran, and R.T. Holmes. 2003. Multiple density-dependent mechanisms regulate a migratory bird population during the breeding season. Proc. Royal Society London B 270:2105-2110
Jones, J., P. J. Doran and R.T. Holmes. 2003. Climate and food synchronize regional forest bird abundances. Ecology 84: 3024-3032
Rubenstein, D.R., C. P. Chamberlain, R.T. Holmes, et al. 2002. Linking breeding and wintering ranges of a Neotropical migrant songbird using stable isotopes. Science 295:591-593
Sillett, T.S., and R.T. Holmes. 2002. Variation in survivorship of a migratory songbird throughout its annual cycle. Journal of Animal Ecology 71:296-308
McPeek, M.A., N.L. Rodenhouse, T.W. Sherry, and R.T. Holmes. 2001. Site dependent population regulation: population-level regulation without individual-level interactions. Oikos 94:417-424
Holmes, R.T., and T.W. Sherry. 2001. Thirty-year bird population trends in an unfragmented temperate deciduous forest: importance of habitat change. Auk 118:589-610
Sillett, T.S., R.T. Holmes, and T.W. Sherry. 2000. Impacts of a global climate cycle on population dynamics of a migratory songbird. Science 288: 2040-2042
Michael B. Hoppa

Cuhadar U, Calzado-Reyes L, Pascual-Caro C, Aberra AS, Ritzau-Jost A, Aggarwal A, Ibata K, Podgorski K, Yuzaki M, Geis C, Hallerman S, Hoppa MB, de Juan-Sanz J. 2024. Activity-driven synaptic translocation of LGI1 controls excitatory neurotransmission. Cell Rep. May 28;43(5):114186. doi: 10.1016/j.celrep.2024.114186. Epub 2024 May 2. PMID: 38700985

Farrell RJ, Bredvik KG, Hoppa MB, Hennigan ST, Brown TA, Ryan TA. 2024. A ratiometric ER calcium sensor for quantitative comparisons across cell types and subcellular regions. bioRxiv. Feb 16:2024.02.15.580492. doi: 10.1101/2024.02.15.580492. PMID: 38405980 Free PMC article.

Ralowicz AJ, Hokeness S, Hoppa MB. 2024. Frequency of Spontaneous Neurotransmission at Individual Boutons Corresponds to the Size of the Readily Releasable Pool of Vesicles. J Neurosci. May 1;44(18):e1253232024. doi: 10.1523/JNEUROSCI.1253-23.2024. PMID: 38383495 Free PMC article.

Aggarwal A, Liu R, Chen Y, Ralowicz AJ, Bergerson SJ, Tomaska F, Mohar B, Hanson TL, Hasseman JP, Reep D, Tsegaye G, Yao P, Ji X, Kloos M, Walpita D, Patel R, Mohr MA, Tillberg PW; GENIE Project Team; Looger LL, Marvin JS, Hoppa MB, Konnerth A, Kleinfeld D, Schreiter ER, Podgorski K. 2023. Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission. Nat Methods. Jun;20(6):925-934. doi: 10.1038/s41592-023-01863-6. May 4. PMID: 37142767 Free PMC article.

Panzera LC, Hoppa MB. 2022. Condensing our understanding of endocytosis. Neuron. Sep 7;110(17):2705-2707. doi: 10.1016/j.neuron.2022.08.002. PMID: 36076334 Free article.

Chipman PH, Fetter RD, Panzera LC, Bergerson SJ, Karmelic D, Yokoyama S, Hoppa MB, Davis GW. 2022. NMDAR-dependent presynaptic homeostasis in adult hippocampus: Synapse growth and cross-modal inhibitory plasticity. Neuron. Oct 19;110(20):3302-3317.e7. doi: 10.1016/j.neuron.2022.08.014. Epub 2022 Sep 6. PMID: 36070750

Panzera, L.C., Johnson, B., Quinn, J.A., Cho, I.H., Tamkun, M.M., Hoppa, M.B. (2022) Activity-dependent endoplasmic reticulum Ca2+ uptake depends on Kv2.1-mediated endoplasmic reticulum/plasma membrane junctions to promote synaptic transmission. Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2117135119. doi: 10.1073/pnas.2117135119. Epub 2022 Jul 21. PMID: 35862456

Ralowicz, A.J., Hoppa, M.B. (2022) Dividing communication, at the nanoscale. Elife. 2022 May 24;11:e79446. doi: 10.7554/eLife.79446. PMID: 35608410

Jordan T, Newcomb JM, Hoppa MB, Luke GP. (2022) Focused ultrasound stimulation of an ex-vivo Aplysia abdominal ganglion preparation. J Neurosci Methods. Apr 15;372:109536. doi: 10.1016/j.jneumeth.2022.109536. Epub 2022 Feb 25. PMID: 35227740

Cho, I.H., Panzera, L.C., Chin, M., Alpizar, S.A., Olveda, G.E., Hill, R.A., Hoppa, M.B. (2020) The potassium channel subunit Kvβ1 serves as a major control point for synaptic facilitation. Proceedings of the National Academy of Sciences., USA. 2020 Nov 24;117(47):29937-29947
Edwards, K.A., Hoppa, M.B., Bosco, G. (2020) The Photoconvertible Fluorescent Probe, CaMPARI, Labels Active Neurons in Freely-Moving Intact Adult Fruit Flies. Frontiers in Neural Circuits., 2020 May 8;14:22
Perez-Alvarez, A., Fearey, B., Schulze,C., O'Toole, R.J., Moeyaert, B., Mohr, M.A., Arganda-Carreras, I., Yang, W., Wiegert, J.S., Schreiter, E.R., Gee, C.E., Hoppa, M.B., Oertner, T.G. Freeze-frame imaging of synaptic activity using SynTagMA. Nature Communications., 2020 May 18;11(1):2464.
Panzera, L.C., Hoppa, M.B. (2019) Genetically Encoded Voltage Indicators Are Illuminating Subcellular Physiology of the Axon. Frontiers in Cellular Neuroscience., 2019 Mar 1;13:52.
Alpizar, S.A., Cho, I.H., Hoppa, M.B. Subcellular control of membrane excitability in the axon. Current Opinion in Neurobiology., 2019 Aug;57:117-125.
Alpizar, S.A., Baker, A.L., Gulledge, A.T., Hoppa, M.B. Loss of Neurofascin-186 Disrupts Alignment of AnkyrinG Relative to Its Binding Partners in the Axon Initial Segment. Frontiers of Cellular Neuroscience., 2019 Jan 22;13:1.
Cho, I.H., Panzera, L.C, Chin. M., Hoppa, M.B. Sodium Channel β2 Subunits Prevent Action Potential Propagation Failures at Axonal Branch Points. Journal of Neuroscience. 2017 Sep 27;37(39):9519-9533.
Kyung, J.W., Cho, I.H., Lee, S., Song, W.K., Ryan, T.A., Hoppa, M.B., Kim, S.H. Adaptor Protein 2(AP-2) complex is essential for functional axogenesis in hippocampal neurons. Scientific Reports. 2017 Jan 31;7:41620.
Baumgart, J.P., Zhou, Z.Y., Hara, M., Cook, D.C., Hoppa, M.B., Ryan, T.A., Hemmings, H.C. Jr. Isoflurane inhibits synaptic vesicle exocytosis through reduced Ca2+ influx, not Ca2+-exocytosis coupling. Proceedings of the National Academy of Science, USA. 2015 Sep 22;112(38):11959-64.
Hoppa, M.B., Gouzer, G,. Armbruster, M., Ryan, T.A. Control and plasticity of the presynaptic action potential waveform at small CNS nerve terminals. Neuron. 2014 Nov 19;84(4):778-89.
Hoppa, M.B., Lana, B., Margas, W., Dolphin, A.C., Ryan, T.A. α2δ expression setsmpresynaptic calcium channel abundance and release probability. Nature. 2012 May13;486(7401):122-5.
Ariel, P., Hoppa, M.B., Ryan, T.A. Intrinsic variability in Pv, RRP size, Ca(2+) channel repertoire, and presynaptic potentiation in individual synaptic boutons. Frontiers of Synaptic Neuroscience. 2012;4:9.
Hoppa, M.B., Lana, B., Margas, W., Dolphin, A.C., Ryan, T.A. α2δ expression sets presynaptic calcium channel abundance and release probability. Nature. 2012 May 13;486(7401):122-5.
Hoppa, M.B., Jones, E., Karanauskaite, J., Ramracheya, R., Braun, M., Collins, S.C., Zhang, Q., Clark, A., Eliasson, L., Genoud, C., Macdonald, P.E., Monteith, A.G., Barg, S., Galvanovskis, J., Rorsman, P. Multivesicular exocytosis in rat pancreatic beta cells. Diabetologia. 2012 Apr;55(4):1001-12.
Collins, S.C., Hoppa, M.B., Walker, J.N., Amisten, S., Abdulkhader, F., Bengtsson, M., Fearnside, J., Ramracheya, R., Toye, A.A., Zhang, Q., Clark, A., Gauguier, D., Rorsman, P. Progression of diet-induced diabetes in C57Bl6J mice involves functional dissociation of Ca2+ channels from secretory vesicles. Diabetes. 2010 May;59(5):1192-201.
Hoppa, M.B., Collins, S., Ramracheya, R., Hodson, L., Amisten, S., Zhang, Q., Johnson, P., Ashcroft, F.M., Rorsman, P. Chronic palmitate exposure inhibits insulin secretion by dissociation of Ca(2+) channels from secretory granules. Cell Metabolism. 2009 Dec;10(6):455-65.
Caitlin G Howe

A complete list of my published work can be found at:

https://www.ncbi.nlm.nih.gov/myncbi/caitlin.howe.1/bibliography/public/

Yim G, McGee G, Gallagher L, Baker E, Jackson BP, Calafat AM, Cook Botelho J, Gilbert-Diamond D, Karagas MR, Romano ME, Howe CG. Metals and per- and polyfluoroalkyl substances mixtures and birth outcomes in the New Hampshire Birth Cohort Study: Beyond single-class mixture approaches. Chemosphere. 2023;329:138644.

Howe CG, Foley HB, Farzan SF, Chavez TA, Johnson M, Meeker JD, Bastain TM, Marsit CJ, Breton CV. Urinary metals and maternal circulating extracellular vesicle microRNA in the MADRES pregnancy cohort. Epigenetics. 2022;17(10):1128-1142.

Howe CG, Foley HB, Kennedy EM, Eckel SP, Chavez TA, Faham D, Grubbs BH, Al-Marayati L, Lerner D, Suglia S, Bastain TM, Marsit CJ, Breton CV. Extracellular vesicle microRNA in early versus late pregnancy with birth outcomes in the MADRES study. Epigenetics. 2022;17(3):269-285.

Howe CG, Margetaki K, Vafeiadi M, Roumeliotaki T, Karachalious M, Kogevinas M, McConnell R, Eckel SP, Conti DV, Kippler M, Farzan SF, Chatzi L. Prenatal metal mixtures and child blood pressure in the Rhea mother-child cohort in Greece. Environmental Health. 2021;20(1):1-16.

Howe CG, Claus Henn B, Eckel SP, Farzan SF, Grubbs BH, Chavez TA, Hodes TL, Faham D, Al-Marayati L, Lerner D, Quimby A, Twogood S, Richards MJ, Meeker D, Bastain TM, Breton CV. Prenatal metal mixtures and birth weight for gestational age in a predominately lower-income Hispanic pregnancy cohort in Los Angeles. Environmental Health Perspectives. 2020;128(11):117001.

Howe CG, Cox B, Fore R, Jungius J, Kvist T, Lent S, Miles HE, Salas LA, Rifas-Shiman S, Starling AP, Yousefi P, Ladd-Acosta C, Baccarelli A, et al. Maternal gestational diabetes mellitus and newborn DNA methylation: findings from the pregnancy and childhood epigenetics consortium. Diabetes Care. 2020;43(1):98-105.
Thomas P. Jack

Xu, Y., Prunet, N., Gan, E.-S., Wang, Y., Stewart, D., Wellmer, F., Huang, J., Yamaguchi, N., Tatsumi, Y., Kojima, M., Kiba, T., Sakakibara, H., Jack, T. P., Meyerowitz, E. M., Ito, T. (2018). SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J. 37: e97499. doi: 10.15252/embj.201797499.
Prunet, N., Yang, W., Das, P., Meyerowit, E.M., Jack, T.P. (2017) SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7166-7171. doi: 10.1073/pnas.1705977114. Epub 2017 Jun 20.
Brancaccio-Taras, L., Pape-Lindstrom, P. A., Peteroy-Kelly, M., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Cahill, M., Frey, G., Jack, T., Kelrick, M., Marley, K. E., Miller, K. G., Osgood, M. P., Romano, S. L. Uzman, J. A., Zhao. J. (2016). The PULSE Vision & Change Rubrics: A valid and equitable tool to measure life sciences department transformation at all institution types. CBE Life Sci Educ. 2016 Winter; 15(4): ar60. doi: 10.1187/cbe.15-12-0260 PMCID: PMC5132357 PMID: 27856548.
Prunet, N., Jack, T. P., and Meyerowitz, E. M. (2016) Live confocal imaging of Arabidopsis flower buds. Dev Biol. 2016 Mar 15. pii: S0012-1606(16)30066-5. doi: 10.1016/j.ydbio.2016.03.018. [Epub ahead of print]
Prunet, N., Morel, P., Champelovier, P., Thierry, A.-M., Negrutiu, I., Jack, T., and Trehin, C. (2015). SQUINT promotes stem cell homeostasis and floral meristem termination in Arabidopsis through APETALA2 and CLAVATA signaling. J. Ex. Bot. 66, 6905-6916.
Pape-Lindstrom, P. A., Jack, T., Miller, K. G., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Awong-Taylor, J., Brancaccio-Taras, L., Marley, K. E., Osgood, M. P., Peteroy-Kelly, M., Romano, S. L. (2015). PULSE pilot certification results. J. Microbiol. Ed. 16, 127-129.
Wellmer, F., Bowman, J. L., Davies, B., Ferrandiz, C., Fletcher J. C., Franks, R. G., Graciet, E., Gregis, V., Ito, T., Jack, T. P., Jiao, Y., Kater, M. M., Ma, H., Meyerowitz, E. M., Prunet, N., and Riechmann, J. L. (2014). Flower Development: Open Questions and Future Directions. In Methods in Molecular Biology - Flower Development: Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 103-124.
Prunet, N. and Jack, T. (2014). Flower development in Arabidopsis – there's more to it than learning your ABCs. In Methods in Molecular Biology - Flower Development: Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 3-33.
Gauthier, A., and Jack, T. (2014). The Professor and the instructional designer: a course design journey. Transformations: Liberal Arts in the Digital Age.
Aguirre, K. M., Balser, T. C., Jack, T., Marley, K. E., Miller, K. G., Osgood, M. P., Pape-Lindstrom, P. A., and Romano, S. L. (2013). PULSE Vision & Change Rubrics. CBE-Life Sciences Education 12, 579-581. (corresponding author).
Jacob, N., Lee-Brown, M., Allen, T., Gusky, S., and Jack, T. (2013). Catalysing educational transformation: The PULSE Project. GARNish Newsletter 20, 18-21.
Nag, A., and Jack, T. (2010). Sculpting the flower: the role of miRNAs in flower development. Current Topics Dev. Biol. 91, 349-378.
Nag, A., King. S., and Jack, T. (2009). miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc. Natl. Acad. Sci. USA 106, 22534-22539.
Swaminathan, K., Peterson, K., and Jack, T. (2008). The plant B3 superfamily. Trends in Plant Science 13, 647-655.
Piwarzyk, E., Yang, Y., and Jack, T. (2007). The conserved C-terminal motifs of the Arabidopsis proteins AP3 and PI are dispensable for function. Plant Phys. 145, 1495-1505. (This work received a Faculty of 1000 citation)
Nag, A., Yang, Y., and Jack, T. (2007). DORNRÖSCHEN-LIKE, an AP2 gene, is necessary for stamen emergence in Arabidopsis. Plant Mol. Biol. 65, 219-232. (Work featured in cover photograph.)
Yang, Y and T Jack, Defining Subdomains of the K Domain Important for Protein-Protein Interactions of Plant MADS Proteins, Plant Molecular Biology , 55:1 (2004) 45-59.
Jack, T (2004) Molecular and Genetic Mechanisms of Floral Control, The Plant Cell , 16 S1-S17.
Yang, Y, H Xiang, and T Jack, pistillata-5 , an Arabidopsis B class mutant with strong defects in petal but not in stamen development, Plant Journal , (2003) 33 177-188.
Yang, Y, L Fanning, and T Jack, The K domain mediates heterodimerization of the Arabidopsis floral organ identity proteins, APETALA3 and PISTILLATA, Plant Journal , 33 (2003) 47-60.
Jack, T, Flower Development," Encyclopedia of Plant and Crop Science , R Goodman (ed.) (2003) 464-467.
Prunet, N., Yang, W., Das, P., Meyerowitz, E.M., and T.P. Jack. (2017) SUPERMAN prevents class b gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1705977114 (http://www.pnas.org/content/early/2017/06/19/1705977114)
Yasmine Kamen

Chapman TW, Kamen Y, Piedra ET, and Hill RA. Oligodendrocyte maturation alters the cell death mechanisms that cause demyelination. The Journal of Neuroscience (2024) doi: 10.1523/JNEUROSCI.1794-23.2024 PMID: 38395617
Kamen Y#, Evans KA, Sitnikov S, Spitzer SO, de Faria O Jr, Yucel M, Káradóttir RT#. Clemastine and metformin extend the window of NMDA receptor surface expression in ageing oligodendrocyte precursor cells. Scientific Reports (2024) doi: 10.1038/s41598-024-53615-x. PMID: 38374232 #co-corresponding author
Pivoňková H*, Sitnikov S*, Kamen Y*, Vanhaesebrouck A, Matthey M, Spitzer SO, Ng YT, Tao C, de Faria O Jr, Varga BV, Káradóttir RT. Heterogeneity in oligodendrocyte precursor cell proliferation is dynamic and driven by passive bioelectrical properties. Cell Reports (2024) doi: 10.1016/j.celrep.2024.114873 PMID: 39423130 *co-first author
Kamen Y, Pivonkova H, Evans KA, Káradóttir RT. A Matter of State: Diversity in Oligodendrocyte Lineage Cells. The Neuroscientist (2022) doi: 10.1177/1073858420987208. PMID: 33567971
Kamen Y#, Káradóttir RT#. Combining whole-cell patch clamp and dye loading in acute brain slices with bulk RNA sequencing in embryonic to aged mice. STAR Protocols (2021) doi: 10.1016/j.xpro.2021.100439. PMID: 33899020 #co-corresponding author
Spitzer SO*, Sitnikov S*, Kamen Y*, Evans KA, Kronenberg-Versteeg D, Dietmann S, de Faria O Jr, Agathou S, Káradóttir RT. Oligodendrocyte Progenitor Cells Become Regionally Diverse and Heterogeneous with Age. Neuron (2019) doi: 10.1016/j.neuron.2018.12.020. PMID: 30654924 * co-first author
Mark Laidre

Doherty, C.T.M. & Laidre, M.E. (2024). Experimentally seeded social cues in the wild: costs to bearers and potential benefits to receivers. Behavioral Ecology 35: arad105.

Steele, E.P. & Laidre, M.E. (2024). Seeing across variable ecological and social environments: comparative eye morphology of marine and terrestrial hermit crabs (Decapoda: Anomura: Coenobitidae, Paguridae). Journal of Crustacean Biology 44: ruae025.

Parella, S.M. & Laidre, M.E. (2024). Crab comics: another tough day on the beach. ISBE (International Society for Behavioral Ecology) Newsletter 36: 13.

Steele, E.P. & Laidre, M.E. (2023). Group orientation and social order versus disorder: perspective of outsiders toward experimental chains of social hermit crabs. Ethology 129: 344-355.

Doherty, C.T.M. & Laidre, M.E. (2023). Doors to the homes: signal potential of red coloration of claws in social hermit crabs. Integrative Organismal Biology 5: obad018.

Steele, E.P. & Laidre, M.E. (2023). Wild social behavior differs following experimental loss of vision in social hermit crabs. The Science of Nature 110: 20.

Doherty, C.T.M. & Laidre, M.E. (2022). Individualism versus collective movement during travel. Scientific Reports 12: 7508.

Laidre, M.E. (2022). Unearthing a hidden world of underground architecture. Trends in Ecology & Evolution 37: P389-391.

Smith, S.M. & Laidre, M.E. (2022). Crab comics: a scientifically-informed cartoon series. ISBE (International Society for Behavioral Ecology) Newsletter 34: 12.

Laidre, M.E. (2021). The architecture of cooperation among non-kin: coalitions to move up in nature's housing market. Frontiers in Ecology and Evolution 9: 766342.

Laidre, M.E. (2021). Animal architecture. Current Biology 31: R1458-R1464.

Laidre, M.E. (2021). Social conquest of land: sea-to-land changes in shell architecture and body morphology, with consequences for social evolution. Arthropod Structure & Development 63: 101064.

Laidre, M.E. (2021). Review of 'Social Butterflies' (Monographs in Population Biology, Volume 65, Princeton University Press) by Henry S. Horn. The Quarterly Review of Biology 96: 309-310.

Laidre, M.E. (2021). Henry Horn (1941 - 2019) and his final book 'Social Butterflies' (2021). ISBE (International Society for Behavioral Ecology) Newsletter 33: 14-15.

Doherty, C.T.M. & Laidre, M.E. (2020). Evolutionary loss of threat display in more social species: phylogenetic comparisons, natural interactions in the wild, and experiments with models. Behaviour 157: 1025-1058.

Krieger, J., M.K. Hörnig, & Laidre, M.E. (2020). Shells as 'extended architecture': to escape isolation, social hermit crabs choose shells with the right external architecture. Animal Cognition 23: 1177-1187.

Laidre, M.E. (2020). Biodiversity Action Plan for the coconut crab (Birgus latro) on Chagos Archipelago. Peer-reviewed 10-yr plan commissioned by the British Indian Ocean Territory (BIOT) Administration, pp. 1-22. Edited by Prof John Turner and Dr. Ronan Roche. Foreign, Commonwealth & Development Office, King Charles Street, London, UK.

Laidre, M.E. (2019). Architectural modification of shells by terrestrial hermit crabs alters social dynamics in later generations. Ecology 100: e02767.

Laidre, M.E. (2019). Life, in a nutshell. Frontiers in Ecology and the Environment 17: 202.

Laidre, M.E. (2019). Private parts for private property: evolution of penis size with more valuable, easily stolen shells. Royal Society Open Science 6: 181760.

Valdes, L. & Laidre, M.E. (2019). Scent of death: evolution from sea to land of an extreme collective attraction to conspecific death. Ecology and Evolution 9: 2171-2179.

Steele, E.P. & Laidre, M.E. (2019). Leaf me alone: visual constraints on the ecology of social group formation. Behavioral Ecology and Sociobiology 73: 53.

Roberts, L. & Laidre, M.E. (2019). Get off my back: vibrational assessment of homeowner strength. Biology Letters 15: 20180819.

Roberts L. & Laidre, M.E. (2019). Finding a home in the noise: cross-modal impact of anthropogenic vibration on animal search behaviour. Biology Open 8: bio041988.

Valdes, L. & Laidre, M.E. (2018). Resolving spatio-temporal uncertainty in rare resource acquisition: smell the shell. Evolutionary Ecology 32: 247-263.

Laidre, M.E. (2018). Coconut crabs. Current Biology 28: R58-R60.

Laidre, M.E. (2018). Evolutionary ecology of burrow construction and social life. Chapter 11 In: Life Histories (edited by G.A. Wellborn and M. Thiel), pp 279-301. Oxford University Press.

Laidre, M.E. (2018). Social cognition in the wild: from lab to field in hermit crabs. A brief commentary In: Field and Laboratory Methods in Animal Cognition: A Comparative Guide (edited by N. Bueno-Guerra and F. Amici), pp 237-239. Cambridge University Press.

Bates, K.M. & Laidre, M.E. (2018). When to socialize: perception of time-sensitive social structures among social hermit crabs. Animal Behaviour 138: 19-27.

Valdes, L. & Laidre, M.E. (2018). Shoals: island where Dartmouth can study marine life. Dartmouth Undergraduate Journal of Science (DUJS) 20: 30-32.

Laidre, M.E. (2018). Review of 'Sociality: The Behaviour of Group-Living Animals' by Ashley Ward and Mike Webster. Animal Behaviour 142: 181-182.

Laidre, M.E. (2017). Ruler of the atoll: the world's largest land invertebrate. Frontiers in Ecology and the Environment 15: 527-528.

Laidre, M.E. (2017). Coconut crabs: from behaviour to conservation. Chagos News 51: 4-7.

Laidre, M.E. (2017). Review of 'Noise Matters: The Evolution of Communication' (Harvard University Press) by R. Haven Wiley. The Auk: Ornithological Advances 134: 479-480.

Greggor, A.L. & Laidre, M.E. (2016). Food fights: aggregations of marine hermit crabs (Pagurus samuelis) compete equally for food- and shell-related carrion. Bulletin of Marine Science 92: 293-303.

Laidre, M.E. & Greggor, A.L. (2015). Swarms of swift scavengers: ecological role of marine intertidal hermit crabs in California. Marine Biology 162: 969-977.

Laidre, M.E. & Kraft, T.S. (2015). Review of 'Social Learning: An Introduction to Mechanisms, Methods, and Models' (Princeton University Press) by William Hoppitt and Kevin Laland. International Journal of Primatology 36:1060-1064.

Laidre, M.E. & Trinh, R. (2014). Unlike terrestrial hermit crabs, marine hermit crabs do not prefer shells previously used by conspecifics. Crustaceana 87: 856-865.

Laidre, M.E. (2014). The social lives of hermits. Natural History 122: 24-29.
Wei-Lih Lee

Omer, S., Brock, K., Beckford, J., Lee, W.-L. (2020) Overexpression of Mdm36 reveals Num1 foci that mediate dynein-dependent microtubule sliding in budding yeast. Journal of Cell Science. Oct 15;133(20)
Zhu Y, Tan W., W.-L. Lee (2018). An in vitro Microscopy-based Assay for Microtubule-binding and Microtubule-crosslinking by Budding Yeast Microtubule-associated Protein. Bio-protocol 8(23): e3110. doi: 10.21769/BioProtoc.3110.
Greenberg S.R., Tan W., W.-L. Lee (2018). Num1 versus NuMA: insights from two functionally homologous proteins. Biophysical Reviews, 10(6):1631-1636. doi: 10.1007/s12551-018-0472-x.
Omer S., Greenberg S.R., W.-L. Lee (2018). Cortical dynein pulling mechanism is regulated by differentially targeted attachment molecule Num1. Elife, 7:e36745. doi: 10.7554/eLife.36745.
Zhu Y., An X., Tomaszewski A., Hepler P.K., W.-L. Lee (2017). Microtubule-crosslinking activity of She1 ensures metaphase spindle stability for spindle positioning. Journal of Cell Biology, 216(9):2759-2775.
Bezanilla M., Gladfelter A.S., Kovar D.R., W.-L. Lee (2015). Cytoskeletal dynamics: a view from the membrane. Journal of Cell Biology, 209(3):329-37.
Markus S.M., Omer S., Baranowski K., W.-L. Lee (2015). Improved plasmids for fluorescent protein tagging of microtubules in Saccharomyces cerevisiae. Traffic, 16(7):773-86.
Markus S.M., Kalutkiewicz K.A., W.-L. Lee (2012). She1-mediated inhibition of dynein motility along astral microtubules promotes polarized spindle movements. Current Biology, 22(23):2221-30.
Collins E.S., Balchand S.K., Faraci J.L., Wadsworth P., W.-L. Lee (2012). Cell cycle-regulated cortical dynein/dynactin promotes symmetric cell division by differential pole motion in anaphase. Molecular Biology of the Cell, 23(17):3380-90.
Tang X.Y., Germain B.J., W.-L. Lee (2012). A novel patch assembly domain in Num1 mediates dynein anchoring at the cortex during spindle positioning. Journal of Cell Biology, 196(6):743-56.
Markus S.M., W.-L. Lee (2011). Regulated offloading of cytoplasmic dynein from microtubule plus ends to the cortex. Developmental Cell, 20:639-651.
Tang X.Y., J.J. Punch, W.-L. Lee (2009). A CAAX motif can compensate for the PH domain of Num1 for cortical dynein attachment. Cell Cycle, 8(19):3182-3190.
C. Robertson McClung

Lou, P., Greenham, K., McClung, C.R. (2022) Rhythmic Leaf and Cotyledon Movement Analysis. Methods Mol Biol. 2022;2494:125-134. doi: 10.1007/978-1-0716-2297-1_9. PMID: 35467204

Deng. L., Gao, B., Zhao, L., Zhang, Y., Zhang, Q., Guo, M., Yang, Y., Wang, S., Xie, L., Lou, H., Ma, M., Zhang, W., Cao, Z., Zhang, Q., McClung, C.R, Li, G., Li, X. (2022) Diurnal RNAPII-tethered chromatin interactions are associated with rhythmic gene expression in rice. Genome Biol. Jan 6;23(1):7. doi: 10.1186/s13059-021-02594-7. PMID: 34991658

McClung, C.R. (2021) Circadian Clock Components Offer Targets for Crop Domestication and Improvement. Genes (Basel). 2021 Mar 6;12(3):374. doi: 10.3390/genes12030374. PMID: 33800720
Lou, P., S. Woody, K. Greenham, R.VanBuren, M. Colle, P.P. Edger, R. Sartor, Y. Zheng, N. Levendoski, J. Lim, C.So, B. Stoveken, T. Woody, J. Zhao, S. Shen, R.M. Amasino & C.R. McClung. 2020. Genetic and genomic resources to study natural variation in Brassica rapa. Plant Direct. Dec 22;4(12):e00285. doi: 10.1002/pld3.285.

Deng. L., Gao, B., Zhao, L., Zhang, Y., Zhang, Q., Guo, M., Yang, Y., Wang, S., Xie, L., Lou, H., Ma, M., Zhang, W., Cao, Z., Zhang, Q., McClung, C.R, Li, G., Li, X. (2022) Diurnal RNAPII-tethered chromatin interactions are associated with rhythmic gene expression in rice. Genome Biol. Jan 6;23(1):7. doi: 10.1186/s13059-021-02594-7. PMID: 34991658

McClung, C.R. (2021) Circadian Clock Components Offer Targets for Crop Domestication and Improvement. Genes (Basel). Mar 6;12(3):374. doi: 10.3390/genes12030374. PMID: 33800720
Greenham, K., R.C. Sartor, S. Zorich, P. Lou, T.C. Mockler, & C.R. McClung. 2020. Expansion of the circadian transcriptome in Brassica rapa and genome wide diversification of paralog expression patterns. Elife. Sep 30;9:e58993. doi: 10.7554/eLife.58993
Leinonen, P.H., M.J. Salmela, K. Greenham, C.R. McClung, & J.H. Willis. 2020. Populations are differentiated in biological rhythms without explicit elevational clines in the plant Mimulus laciniatus. J. Biol. Rhythms 35: 452-464. doi: 10.1177/0748730420936408.
Guadagno, C.R., D. Millar, R. Lai, D.S. Mackay, J.R. Pleban, C.R. McClung, C. Weinig D.R. Wang & B.E. Ewers. 2020. Use of transcriptomic data to inform biophysical models via Bayesian networks. Ecol. Modelling 429: 109086. doi: 10.1016/j.ecolmodel.2020.109086.
Zhang, C., M. Gao, N.C. Seitz, W. Angel, A. Hallworth, L. Wiratan, O. Darwish, N. Alkharouf, T. Dawit, D. Lin, R. Egoshi, X. Wang, C.R. McClung, & H. Lu. 2019. LUX ARRHYTHMO mediates crosstalk between the circadian clock and defense in Arabidopsis. Nature Commun. 10:2543. doi: 10.1038/s41467-019-10485-6.
Park, H.J., D. Baek, J.-Y. Cha, X. Liao, S.-H. Kang, C.R. McClung, S.Y. Lee, D.-J. Yun & W.-Y. Kim.. 2019. HOS15 interacts with the histone deacetylase HDA9 and the Evening Complex to epigenetically regulate the floral activator GIGANTEA. Plant Cell 31:37-51. doi: 10.1105/tpc.18.00721.
McClung, C.R. 2019. The plant circadian oscillator. Biology 8, 14. doi:10.3390/biology8010014
Kim, H., H.J. Kim, Q.T. Vu, S. Jung, C.R. McClung, S. Hong & H.G. Nam. 2018. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. USA 115: 8448-8453. doi 10.1073/pnas.1722407115.
Greenham, K., P. Lou, J.R. Puzey, G. Kumar, C. Arnevik, H. Farid, J.H. Willis & C.R. McClung. 2017. Geographic variation of plant circadian clock function in natural and agricultural settings. J. Biol. Rhythms. 32: 26-34
Greenham, K., C.R. Guadagno, M.A. Gehan, T.C. Mockler, C. Weinig, B.E. Ewers & C.R. McClung. 2017. Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa. eLIFE 6: e29655
Lu, H., C.R. McClung, & C. Zhang. 2017. Tick Tock: Circadian regulation of plant innate immunity. Annu. Rev. Phytopathol. 55: 287–311. doi: 10.1146/annurev-phyto-080516-035451.Lu, H., C.R. McClung, & C. Zhang. 2017. Tick Tock: Circadian regulation of plant innate immunity. Annu. Rev. Phytopathol. 55: 287–311. doi: 10.1146/annurev-phyto-080516-035451.
Salmela, M.J., K. Greenham, P. Lou, C.R. McClung, B.E. Ewers & C. Weinig. 2016. Variation in circadian rhythms is maintained among and within populations in Boechera stricta in Wyoming. Plant Cell Environ. 39: 1293-1303.
Yarkhunova,, Y., C.E. Edwards, B.E. Ewers, R.L. Baker, T.L. Aston, C.R. McClung, P. Lou & C. Weinig. 2016. Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa. New. Phytol. 210:133-144.
Kim, J.A., H.-e. Jung, J.K. Hong, V. Hermand, C.R. McClung, Y.-H. Lee, J.Y. Kim, S.I. Lee, M.-J. Jeong, J. Kim, D.J. Yun & W.-Y. Kim. 2016. Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance. Plant Cell Rep. 35:1943-1954. doi: 10.1007/s00299-016-2008-9.
Greenham, K., P. Lou, H. Farid, S.E. Remsen & C.R. McClung. 2015. TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation. Plant Methods 11:33.
Gehan, M.A., K. Greenham, T.C. Mockler & C.R. McClung. 2015. Transcriptional networks – crops, clocks, and abiotic stress. Curr. Op. Plant Biol. 24: 39-46.
Greenham, K. & C.R. McClung. 2015. Integrating circadian dynamics with physiological processes in plants. Nature Rev. Genet. 16: 598-610.
Xie, Q., P. Lou, V. Hermand, R. Aman, H.J. Park, D.-J Yun, W.Y. Kim, M.J. Salmela, B.E. Ewers, C. Weinig, S.L. Khan*, D.L.P. Schaible*, & C.R. McClung. 2015. Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa. Proc. Natl. Acad. Sci. USA 112:3829-3834.
Mark Alan McPeek

Selected Works can be found at: http://www.enallagma.com
Carey D. Nadell

Robitaille, S., Simmons, E.L., Verster, A.J., McClure, E.A., Royce, D.B., Swartz, K., Schultz, D., Nadell, C.D., Ross, B.D. (2023). Community composition and the environment modulate the population dynamics of Type IV secretion in human gut bacteria. (2023). Nature Ecology and Evolution (in press)

Smith, W.P.J., Wucher, B.R., Nadell, C,D., Foster, K.R. (2023). Bacterial defences: mechanisms, evolution, and antimicrobial resistance. Nature Reviews Microbiology 21: 519-534

Wucher, B.R., Winans, J.B., Elsayed, M., Kadouri, D.E., Nadell, C.D†. (2023). Breakdown of clonal cooperative architecture in multispecies biofilms and the spatial ecology of predation. PNAS 120(6): e2212650120.

Winans, J.B., Wucher, B.R., Nadell, C.D†. (2022). Multispecies biofilm architecture determines bacterial exposure to phages. PLoS Biology: e3001913

Huber, M., Lippegaus, A., Melamed, S., Siemers, M., Wucher, B.R.*, Nadell, C.D., Storz, G., Papenfort, K. (2022). An RNA sponge controlling quorum sensing dynamics and biofilm formation in Vibrio cholerae. Nature Communications13: 7585

Teschler, J.K., Jiménez-Siebert, E., Jeckel, H., Singh, P.K., Park, J.H., Pukatzki, S., Nadell, C.D., Drescher. K., Yildiz, F.H. (2022) VxrB Influences Antagonism within Biofilms by Controlling Competition through Extracellular Matrix Production and Type 6 Secretion. mBio. Jul 26:e0188522. doi: 10.1128/mbio.01885-22. Online ahead of print. PMID: 35880882

Tai, J.B., Mukherjee, S., Nero, T., Olson, R., Tithof, J., Nadell, C.D., Yan, J. (2022) Social evolution of shared biofilm matrix components. Proc Natl Acad Sci U S A. Jul 5;119(27):e2123469119. doi: 10.1073/pnas.2123469119. Epub 2022 Jun 30. PMID: 35771939

Teschler, J.K., Nadell, C.D., Drescher, K., Yildiz, F.H. (2022) Mechanisms Underlying Vibrio cholerae Biofilm Formation and Dispersion. Annu Rev Microbiol. 2022 Jun 7. doi: 10.1146/annurev-micro-111021-053553. Online ahead of print. PMID: 35671532

Kerkaert, J.D., Le Mauff, F., Wucher, B.R., Beattie, S.R., Vesely, E.M., Sheppard, D.C., Nadell, C.D., Cramer, R.A. (2022) An Alanine Aminotransferase Is Required for Biofilm-Specific Resistance of Aspergillus fumigatus to Echinocandin Treatment. mBio. Apr 26;13(2):e0293321. doi: 10.1128/mbio.02933-21. Epub 2022 Mar 7. PMID: 35254131

Kasetty, S., Katharios-Lanwermeyer, S., O'Toole, G.A., Nadell, C.D. (2021) Differential Surface Competition and Biofilm Invasion Strategies of Pseudomonas aeruginosa PA14 and PAO1. J Bacteriol. 2021 Oct 25;203(22):e0026521. doi: 10.1128/JB.00265-21. Epub 2021 Sep 13. PMID: 34516283

Koeppen, K., Nymon, A., Barnaby, R., Bashor, L., Li, Z., Hampton, T.H., Liefeld, A.E., Kolling, F.W., LaCroix, I.S., Gerber, S.A., Hogan, D.A., Kasetty, S., Nadell, C.D., Stanton, B.A. (2021) Let-7b-5p in vesicles secreted by human airway cells reduces biofilm formation and increases antibiotic sensitivity of P. aeruginosa. Proc Natl Acad Sci U S A. 2021 Jul 13;118(28):e2105370118. doi: 10.1073/pnas.2105370118. PMID: 34260396

Bond. M.C., Vidakovic, L., Singh, P.K., Drescher, K., Nadell, C.D. (2021) Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells. Elife. Jul 9;10:e65355. doi: 10.7554/eLife.65355. PMID: 34240700

Kasetty, S., Mould, D.L., Hogan, D.A., Nadell, C.D. (2021) Both Pseudomonas aeruginosa and Candida albicans Accumulate Greater Biomass in Dual-Species Biofilms under Flow. mSphere. Jun 30;6(3):e0041621. doi: 10.1128/mSphere.00416-21. Epub 2021 Jun 23. PMID: 34160236

Wucher BR, Elsayed M, Adelman JS, Kadouri DE, Nadell CD† (2021). Bacterial predation transforms the landscape and community assembly of biofilms. Current Biology 31: 1-9
Bond MC, Vidakovic L, Singh PK, Drescher K, Nadell CD†. (2021). Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells. eLife 10:e65355
Kasetty D, Mould DL, Hogan DA, Nadell CD†. (2021). Both Pseudomonas aeruginosa and Candida albicans accumulate greater biomass in dual-species biofilm under flow. mSphere 6(3): e00416-21
Kowalski CH, Morelli KA, Stajich JE, Nadell CD, Cramer RA (2021). A heterogeneously expressed gene family modulates the biofilm architecture and hypoxic growth of Aspergillus fumigatus. mBio 12(1): e03579-20
Koeppen K, Nymon A, Barnaby R, Bashor L, Li Z, Hampton TH, Liefield AE, Kolling FW, LaCroix IS, Gerber S, Hogan DA, Kasetty K, Nadell CD, Stanton BA. (2021). Let-7b-5c in vesicles secreted by human airway cells reduces biofilm formation and increases antibiotic susceptibility of P. aeruginosa. Proceedings of the National Academy of Sciences USA 118(28): e2105370118
Kowalski CH, Morelli KA, Schultz D, Nadell CD, Cramer RA. (2020) Fungal biofilm architecture produces hypoxic microenvironments that drive antifungal resistance. Proceedings of the National Academy of Sciences USA. Sep 8;117(36):22473-22483
Simmons EL, Bond MC, Koskella B, Drescher K, Bucci V, Nadell CD. (2020) Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria. mSystems. Jun 23;5(3):e00877
Díaz-Pascual F, Hartmann R, Lempp M, Vidakovic L, Song B, Jeckel H, Thormann KM, Yildiz FH, Dunkel J, Link H, Nadell CD, Drescher K. (2019) Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function. Nature Microbiology. Dec;4(12):2136-2145
Kitts G, Giglio KM, Zamorano-Sánchez D, Park JH, Townsley L, Cooley RB, Wucher BR, Klose KE, Nadell CD, Yildiz FH, Sondermann H. (2019) A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae. mBio. Dec 3;10(6):e02822-19
Wucher BW, Bartlett TM, Persat A, Nadell CD (2019). Vibrio cholerae filamentation promotes chitin surface attachment at the expense of competition in biofilms. Proceedings of the National Academy of Sciences USA 116(28): 14216-14221
Rossy T, Nadell CD, Persat A. (2018). Cellular advection-diffusion drives emergence of bacterial surface colonization patterns and heterogeneity. Nature Communications 10(1): 2471
Martinez-Garcia R, Nadell CD, Hartmann R, Drescher K, Bonachela J† (2018). Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms. PLoS Computational Biology 14(4): e1006094
Vidakovic L, Singh PK, Hartmann R, Nadell CD, Drescher K. (2018). Dynamic biofilm architecture confers individual and collective mechanisms of viral protection. Nature Microbiology 3: 26-31
Simmons M, Drescher K, Nadell CD, Bucci V. (2017). Phage mobility is a core determinant of phage–bacteria coexistence in biofilms. ISME Journal 12: 531-543
Singh PK, Hartmann R, Bartolomej S, Nadell CD, Drescher K. (2017). Vibrio cholerae combines individual and collective sensing to trigger biofilm dispersal. Current Biology 27: 1-8
Yan J, Nadell CD, Stone HA, Wingreen NS, Bassler BL (2017). Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion. Nature Communications 8: 327
Nadell CD, Ricaurte D*, Yan J, Drescher K, Bassler B (2017). Flow environment and matrix structure interact to shape spatial competition in P. aeruginosa biofilms. eLife 6: e21855
Nadell CD, Hartmann R, Drescher K. (2016) An emerging grip on the growth of grounded bacteria. ACS Nano 10:9109-9110 (commentary)
Nadell CD, Drescher K, Foster KR. (2016) Spatial structure, cooperation, and competition in biofilms. Nature Reviews Microbiology 14: 589-600
Drescher K, Dunkel J, Nadell CD, van Teeffelen S, Grnja I, Wingreen NS, Stone HA, Bassler BL. (2016) Architectural transitions in Vibrio cholerae biofilm development at single-cell resolution. Proceedings of the National Academy of Sciences USA 113(4): E2066-2072
David Ross Peart

Landis, R M, and D R Peart, “Early Performance Predicts Canopy Attainment across Life Histories in Subalpine Forest Trees,” Ecology , 86 (2005) 63-72.
Fagan, M E, and D R Peart, “Impact of the Invasive Shrub Glossy Buckthorn (Rhamnus frangula L.) on Juvenile Recruitment by Canopy Trees,” Forest Ecology and Management , 194 (2004) 95-107.
Blundell, A G, and D R Peart, “Density Dependent Population Dynamics of a Dominant Rain Forest Canopy Tree,” Ecology , 85 (2004) 704-715.
Blundell, A G, and D R Peart, “Recruitment Failure Following Mast Fruiting in a Southeast Asian Dipterocarp Forest,” Journal of Tropical Ecology , 20 (2004) 229-231.
Zens, M S, and D R Peart, “Dealing with Death Data: Individual Hazards, Mortality and Bias,” Trends in Ecology and Evolution , 18 (2003) 366-373.
Kevin J. Peterson

Fromm. B., Domanska, D., Hackenberg, M., Mathelier, A., Hoye, E., Johansen, M., Hovig, E., Flatmark, K., and Peterson, K.J. MirGeneDB2.0: the curated microRNA Gene Database (submitted)
Ramaiah, M., Tan, K., Plank, T.M., Song, H.W., Dumdie, J.N., Jones, S., Shum, E.Y., Sheridan, S.D., Peterson, K.J., Gromoll, J., Haggarty, S.J., Cook-Andersen, H., Wilkinson, M.F.. (2019) A microRNA cluster in the Fragile-X region expressed during spermatogenesis targets FMR1. EMBO Rep. Feb;20(2):e46566
Robinson, J. M., Sperling, E. A., Bergum, B., Adamski, M., Nichols, S. A., Adamska, M., and Peterson, K. J. (2013). The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. Journal of Experimental Zoology (Molecular and Developmental Evolution) 320B 84-93.
Tarver, J. E., Donoghue, P. C. J., and Peterson, K. J. (2012). Do miRNAs have a deep evolutionary history? Bioessays 34, 857-866.
Erwin, D. H. Laflamme, M., Tweedt, S. M., Pisani, D., and Peterson, K. J. (2011). The Cambrian conundrum: Early divergence and later ecological success in the early history of animals. Science, 334, 1091-1097.
Campbell, L. I., Rota-Stabellli, O., Marchioro, T., Longhorn, S. J., Edgecombe, G. D., Telford, M. J., Philippe, H., Rebecchi, L., Peterson, K. J., and Pisani, D. (2011). MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest the velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences, USA 108, 15920-15924.
Anderson, B. M., Pisani, D., Miller, A. I., and Peterson, K. J. (2011). The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record. Geology 2011, 971-974.
Campo-Paysaa, F., Sémon, M., Cameron, R. A., Peterson, K. J., and Schubert, M. (2011). miRNA complements in deuterostomes: origin and evolution of miRNAs. Evolution & Development 13, 15-27.
Philippe, H., Brinkmann, H., Copley, R. R., Moroz, L. L., Nakano, H., Poustka, A. J., Wallberg, A., Peterson, K. J., and Telford, M. J. (2011). Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470, 255-258.
Sperling, E. A., Peterson, K. J., and LaFlamme, M. (2010). Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran ocean Geobiology 9, 24-33.
Hydra Genome Consortium (2010). The dynamic genome of Hydra. Nature 464, 592-596.
Rota-Stabellli, O., Campbell, L., Brinkmann, H., Edgecombe, G. D., Longhorn, S. J., Peterson, K. J., Pisani, D., Philippe, H., and Telford, M. (2010). A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings of the Royal Society of London B Biological Sciences 278, 298-306.
Heimberg, A. M., Cowper-Sal lari, R., Sémon, M., Donoghue, P. C. J., and Peterson, K. J. (2010). microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences, USA 107, 19379-19383.
Sperling, E. A., Robinson, J. M., Pisani, D., and Peterson, K. J. (2010). Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Mry missing Precambrian fossil record of siliceous-sponge spicules. Geobiology 8, 24-36.
Sperling, E. A., Vinther, J., Moy, V. N., Wheeler, B. M., Sémon, M., Briggs, D. E. G., and Peterson, K. J. (2009). MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings of the Royal Society of London B Biological Sciences 276, 4315-4322.
Sperling, E. A., Peterson, K. J., and Pisani, D. (2009). Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution 26, 2261-2274.
Peterson, K. J., Dietrich, M. R., and McPeek, M. A. (2009). MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 31, 736-747.
Wheeler, B. M., Heimberg, A. M., Moy, V. N., Sperling, E. A., Holstein, T. W., Heber, S., and Peterson, K. J. (2009). The deep evolution of metazoan microRNAs. Evolution & Development 11, 50-68.
Tracy Punshon

Lee JW, Zhou J, Moen EL, Punshon T, Hoen AG, Romano ME, Karagas MR, Gui J. (2021) Prediction of an outcome using NETwork Clusters (NET-C). Comput Biol Chem. Feb;90:107425.

Signes-Pastor AJ, Punshon T, Cottingham KL, Jackson BP, Sayarath V, Gilbert-Diamond D, Korrick S, Karagas MR. (2020) Arsenic exposure in relation to apple consumption among infants in the New Hampshire Birth Cohort Study. Expo Health. Dec;12(4):561-567.

Doherty BT, Romano ME, Gui J, Punshon T, Jackson BP, Karagas MR, Korrick SA. (2020) Periconceptional and prenatal exposure to metal mixtures in relation to behavioral development at 3 years of age. Environ Epidemiol. 2020 Jul 6;4(4)

Tian FY, Everson TM, Lester B, Punshon T, Jackson BP, Hao K, Lesseur C, Chen J, Karagas MR, Marsit CJ. (2020) Selenium-associated DNA methylation modifications in placenta and neurobehavioral development of newborns: An epigenome-wide study of two U.S. birth cohorts. Environ Int. 2020 Apr;137:105508

Kennedy E, Everson TM, Punshon T, Jackson BP, Hao K, Lambertini L, Chen J, Karagas MR, Marsit CJ. (2020) Copper associates with differential methylation in placentae from two US birth cohorts. Epigenetics. 2020 Mar;15(3):215-230

Karagas MR, Punshon T, Davis M, Bulka CM, Slaughter F, Karalis D, Argos M, Ahsan H. (2019) Rice Intake and Emerging Concerns on Arsenic in Rice: a Review of the Human Evidence and Methodologic Challenges. Curr Environ Health Rep. Dec;6(4):361-372.

Lee JW, Moen EL, Punshon T, Hoen AG, Stewart D, Li H, Karagas MR, Gui J. (2019) An Integrated Gaussian Graphical Model to evaluate the impact of exposures on metabolic networks. Comput Biol Med. Nov;114:103417.

To see additional publications, please vist PubMed.
Megan E Romano

Link to Publications: https://www.romanolabepidemiology.org/publications
G. Eric Schaller

Shakeel, S.N., Swadhin, S., Aman, S., and Schaller, G.E. (2021) Interaction of cytokinin and ethylene in the regulation of primary root growth and development. In: Rhizobiology: Molecular Physiology of Plant Roots (Soumya Mukherjee, František Baluška, eds.) Signaling and Communication in Plants. Springer Springer, Cham. pp. 195-238. https://doi.org/10.1007/978-3-030-84985-6_13

Acheampong, A.K., Shanks, C., Cheng, C.Y., Schaller, G.E., Dagdas, Y., Kieber, J.J. (2020) EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity. Proc Natl Acad Sci U S A. Oct 27;117(43):27034-27043. doi: 10.1073/pnas.2013161117. PMID: 33051300

Hodgens, C., Chang, N., Schaller, G.E., Kieber, J,J. (2020) Mutagenomics: A Rapid, High-Throughput Method to Identify Causative Mutations from a Genetic Screen. Plant Physiology. Dec;184(4):1658-1673.
Yamburenko, M.V., Worthen, J.M., Zeenat, A., Azhar, B.J., Swain, S., Couitt, A.R., Shakeel, S.N., Kieber, J.J., Schaller, G.E. Functional Analysis of the Rice Type-B Response Regulator RR22. (2020) Frontiers of Plant Science. 0;11:577676.
Burr, C.A., Sun, J., Yamburenko, M.V. Willoughby, A., Hodgens, C., Boeshore, S.L., Elmore, A., Atkinson, J., Nimchuk, Z.L., Bishopp, A.,Schaller, G.E., Kieber, J.J. (2020) The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice. Development. Oct 27;147(20):dev191734
Zubo, Y.O., Schaller, G.E. (2020) Role of the Cytokinin-Activated Type-B Response Regulators in Hormone Crosstalk. Plants (Basel). Jan 30;9(2):166.
Worthen, J.M., Yamburenko, M.V., Lim, J., Nimchuk, Z.L., Kieber, J.J., Schaller, G.E. (2019) Type-B response regulators of rice play key roles in growth, development and cytokinin signaling. Development. Jul 10;146(13):dev174870.
Binder, B.M., Kim, H.J., Mathews, D.E., Hutchison, C.E., Kieber, J.J., Schaller, G.E. (2018) A role for two-component signaling elements in the Arabidopsis growth recovery response to ethylene. Plant Direct. May 9;2(5):e00058
Potter, K.C., Wang, J., Schaller, G.E., Kieber, J.J. (2018) Cytokinin modulates context-dependent chromatin accessibility through the type-B response regulators. Nature Plants. Dec;4(12):1102-1111.
Zubo, Y.O., Blakley, I.C., Franco-Zorrilla, J.M., Yamburenko, M.V., Solano, R., Kieber, J.J., Loraine, A.E., and Schaller, G.E. (2018) Coordination of chloroplast development through the action of the GNC and GLK transcription factor families. Plant Physiol. 178:130-147.
Kieber, J.J., and Schaller, G.E. (2018) Cytokinin signaling in plant development. Development. 145:dev149344
Zubo, Y.O., Blakley, I.C., Yamburenko, M.V., Worthen, J.M., Street, I.H., Franco-Zorrilla, J.M., Zhang, W., Hill, K., Raines, T., Solano, R., Kieber, J.J., Loraine, A.E., and Schaller, G.E. (2017) Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis. Proc. Natl. Acad. Sci. USA 114:E5995-E6004.
Yamburenko, M.V., Kieber, J.J., Schaller, G.E. (2017) Dynamic patterns of expression for genes regulating cytokinin metabolism and signaling during rice inflorescence development. PLoS ONE. 12: e0176060.
Binder, B.M. and Schaller, G.E., co-editors. (2017) Ethylene Signaling: Methods and Protocols Methods Mol. Biol. Vol. 1573. Humana Press, Springer Science+Business Media LLC, New York.
Street, I.H., Mathews, D.E., Yamburenko, M.V., Sorooshzadeh, A., John, R.T., Swarup, R., Bennett, M.J., Kieber, J.J., and Schaller, G.E. (2016) Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root. Development 143:3982-3993.
Street, I.H., Aman, S., Zubo, Y., Ramzan, A., Wang, X., Shakeel, S.N., Kieber, J.J., and Schaller, G.E. (2015) Ethylene inhibits cell proliferation of the Arabidopsis root meristem. Plant Physiol. 169:338-350.
Rai, M.I., Wang, X., Thibault, D.M., Kim, H.J., Bombyk, M.M., Binder, B.M., Shakeel, S., and Schaller, G.E. (2015) The ARGOS gene family functions in a negative feedback loop to desensitize plants to ethylene. BMC Plant Biol. 15:157.
Shakeel, S.N., Gao, Z., Amir, M., Chen Y.-F., Rai, M.I., Haq, N.U., and Schaller, G.E. (2015) Ethylene regulates levels of the ethylene receptor/CTR1 signaling complex in Arabidopsis thaliana. J. Biol. Chem. 290:12415-12424
Schaller, G.E., Bishopp, A., and Kieber, J.J. (2015) The yin-yang of hormones: Cytokinin and auxin interactions in plant development. Plant Cell. 27: 44-63
Kieber, J.J. and Schaller, G.E. (2014) Cytokinins. Arabidopsis Book. 12:e0168 doi: 10.1199/tab.0168
Kim, H.J., Chiang, Y.-H., Kieber, J.J., and Schaller, G.E. (2013) SCFKMD controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc. Natl. Acad. Sci. USA. 110:10028-10033.
Hill, K., Mathews, D.E., Kim, H.J., Street, I.H., Wildes, S.L., Chiang, Y.H., Mason, M.G., Alonso, J.M., Ecker, J.R., Kieber, J.J., and Schaller, G.E. (2013) Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiol. 162:212-224.
Shakeel, S.N., Wang, X., Binder, B.M., and Schaller, G.E. (2013) Mechanisms of signal transduction by ethylene: Overlapping and non-overlapping signaling roles in a receptor family. AoB PLANTS. doi: 10.1093/aobpla/plt010
Chiang, Y.-H., Zubo, Y.O., Tapken, W., Kim, H.J., Lavanway, A.M., Howard, L., Pilon, M., Kieber, J.J., Schaller, G.E. (2012) Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis. Plant Physiol. 160: 332-348.
Hall, B.P., Shakeel, S.N., Amir, M., Haq, N.U., Qu, X. and Schaller, G.E. (2012) Histidine-kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol. 159:682-95
Tsai, Y.-C., Weir, N.R., Hill, K., Zhang, W., Kim, H.J., Shiu, S.-H., Schaller, G. E., Kieber, J.J. (2012) Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiol. 158:1666-84
Schaller, G.E., Shiu, S.H., and Armitage, J.P. (2011) Two-component systems and their co-option for eukaryotic signal transduction. Current Biology. 21:R320-R330
Mason M.G., Jha D., Salt D.E., Tester M., Hill K., Kieber J.J., Schaller G.E. (2010) Type-B response regulators ARR1 and ARR12 regulate expression of AtHKT1;1 and accumulation of sodium in Arabidopsis shoots. Plant J. 64:753-763
Chen, Y.-F., Gao, Z., Kerris III, R.J., Wang, W., Binder, B.M., Schaller, G.E. (2010) Ethylene receptors function as components of high-molecular-mass protein complexes in Arabidopsis. PLoS ONE, 5:e8640. doi:10.1371/journal.pone.0008640.
Kieber, J.J., and Schaller, G.E. (2010) The perception of cytokinin: A story 50 years in the making. Plant Physiology.154: 487-492.
Argyros, R.D., Mathews, D.E., Chiang, Y.-H., Palmer, C.M., Thibault, D.M., Etheridge, N., Argyros, D.A., Mason, M.G., Kieber, J.J., and Schaller, G.E. (2008) Type-B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20:2102-2116
Gao, Z., Wen, C.-K., Binder, B.M.,, Chen, Y.-F., Chang, J., Chiang, Y.-H., Kerris III, R.J., Chang, C., Schaller, G.E. (2008) Heteromeric interactions among ethylene receptors mediate signaling in Arabidopsis. J. Biol. Chem. 283:23081-23810
Chen, Y.-F., Shakeel, S.N., Bowers, J., Zhao-X.-C., Etheridge, N., and Schaller, G.E. (2007) Ligand-induced degradation of the ethylene receptor ETR2 through a proteasome-dependent pathway in Arabidopsis. J. Biol. Chem. 282: 24752 – 24758
Roger D. Sloboda

Bloodgood, Robert A., Joseph Tetreault, and Roger D Sloboda. (2019). The Chlamydomonas flagellar membrane glycoprotein FMG-1B is necessary for expression of force at the flagellar surface. Journal of Cell Science, 132, jcs233429. doi:10.1242/jcs.233429
First Person – Robert Bloodgood and Roger Sloboda. (2019). Journal of Cell Science 132, jcs237461. doi:10.1242/jcs.23746
Mizuno, Katsutoshi and Sloboda, Roger D. (2017). Protein arginine methyltransferases interact with intraflagellar transport particles and change location during flagellar growth and resorption. Molecular Biology of the Cell, 28(9):1208-1222. doi: 10.1091/mbc.E16-11-0774. PMID: 28298486
Sloboda, Roger D. (2016). Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in: Cytoskeleton; Methods and Protocols, 3rd ed., pp. 119-137. doi 10.1007/978-1-4939-3124-8_6
Sloboda, Roger D. (2015). Isolation and Analysis of Microtubules and Associated Proteins, In: Subcellular Fractionation: A Laboratory Manual, edited by Paul R. Pryor, Cold Spring Harbor Press, New York, pp: 115-140. doi: 10.1101/pdb.top074526
Kull, F. Jon and Roger D. Sloboda (2014). A Slow Dance for Microtubule Acetylation. Cell, 157:1255-1256. doi: 10.1016/j.cell.2014.05.021
Werner-Petersen, Rita and Sloboda, Roger D. (2013). Methylation of Structural Components of the Axoneme Occurs During Flagellar Disassembly, Biochemistry, 52:8501-09. doi 10.1021/bi4011623
Sloboda, Roger D. (2009). Flagella and Cilia: The Long and the Short of It. Current Biology, 19:R1084-1087. doi 10.1016/j.cell.2014.05.021
Sloboda, Roger D. (2009). Post-Translational Protein Modifications in Cilia and Flagella. Methods in Cell Biology, 94:347-363. doi:10.1016/S0091-679X(08)94018-8
Sloboda, Roger D. (2009). Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in Methods in Molecular Biology: Cytoskeleton Methods and Protocols, ed. by Ray Gavin, Humana Press, 586:207-225. doi: 10.1007/978-1-4939-3124-8_6
Sloboda, Roger D. and Louisa Howard (2009). Protein Methylation in Full Length Chlamydomonas Flagella. Cell Motility and the Cytoskeleton, 66:650-660. doi: 10.1002/cm.20387
Schneider, Mark J., Megan Ulland, and Roger D. Sloboda (2008). A Protein Methylation Pathway in Chlamydomonas Flagella Is Active During Flagellar Resorption, Molecular Biology of the Cell, 19:4319-4327. doi: 10.1091/mbc.E08-05-0470
Elizabeth F. Smith

Lin, J., Le, V., Augsperger, K., Tritschler, D., Bower, R., Fu, G., Perrone, C., O'Toole, E.T., VanderWaal Mills, K., Dymek, E.E., Smith, E.F., Nicastro, D. and M.E. Porter (2019) FAP57/WDR65 targets assembly of a subset of inner arm dyneins and connects to regulatory hubs in cilia. Molecular Biology of Cell, 2019 Oct 1;30(21):2659-2680. doi: 10.1091/mbc.E19-07-0367. Epub 2019 Sep 4. PMID: 31483737
Dymek, E.E., Lin, J., Fu, G., Porter, M.E., Nicastro, D. and E.F. Smith (2019) PACRG and FAP20 form the inner junction of axonemal doublet microtubules and regulate ciliary motility. Molecular Biology of the Cell, 2019 Jul 15;30(15):1805-1816. doi: 10.1091/mbc.E19-01-0063. Epub 2019 May 22. PMID: 31116684
Fu, G., Zhao, L., Dymek, E.E., Hou, Y., Song, K, Phan, N., Shang, Z., Smith, E.F., Witman, G., Nicastro, D. Structural organization of the C1a-e-c supercomplex within the ciliary central apparatus. (submitted)
Loreng, T.D. and E.F. Smith. (2017) The central apparatus of cilia and eukaryotic flagella. In Cilia and Flagella. Wallace Marshall ed. Cold Spring Harbor Laboratory Press. 9(2)
Mizuno, K., E.E. Dymek and E.F. Smith. (2016) Microtubule binding protein PACRG plays a role in regulating specific ciliary dyneins during microtubule sliding. Cytoskeleton.Dec;73(12):703-711. doi: 10.1002/cm.21340.
Vasudevan, K.K., Song, K., Alford, L.M., Sale, W.S., Dymek, E.E., Smith, E.F., Hennessey, T., Joachimiak, E., Urbanska, P., Wloga, D., Dentler, W., Nicastro, D. and J. Gaertig. (2015) FAP206 is a microtubule-docking adapter for ciliary radial spoke 2 and dynein c. Molecular Biology of the Cell. Feb 15;26(4):696-710.
Wren, K.N., Craft, J.M., Tritschler, D., Schauer, A., Patel, D.K., Smith, E.F., Porter, M.E., Kner, P., and K.F. Lechtreck. (2013) A differential cargo-loading model of ciliary length regulation by IFT. Current Biology. Dec 16;23(24):2463-71.
DiPetrillo, C. and E.F. Smith. (2013) Methods for analysis of calcium / calmodulin signaling in cilia and flagella. Methods in Enzymology, 524: 37-57.
Dymek, E.E., Heuser, T., Lin, J., Smith, E.F. and D. Nicastro. (2012) The CSC connects three major axonemal complexes involved in dynein regulation. Molecular Biology of the Cell 23(16):3143-55
DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38 .
Brown J.M., DiPetrillo, C. , Smith, E.F. and G.B. Witman. (2012) A FAP46 mutant provides new insights into the function and assembly of the C1d complex of the ciliary central apparatus. Journal of Cell Science 125(16):3904-13
Dymek, E.E. and E.F. Smith. (2012) PF19 encodes the p60 catalytic subunit of katanin and is required for assembly of the flagellar central apparatus in Chlamydomonas. J. Cell Science 125(Pt 14):3357-66
Goduti, D., and E.F. Smith. (2012) Analyses of functional domains within the PF6 protein of the central apparatus reveal a role for PF6 sub-complex members in regulating flagellar beat frequency. Cytoskeleton 69(3):179-94

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38
Dymek, E.E., Heuser, T., Nicastro, D. and E.F. Smith. (2011) The CSC is required for complete radial spoke assembly and wild-type ciliary motility. Molecular Biology of the Cell 22(14):2520-31
Smith, E.F. and R. Rohatgi. (2011) Cilia 2010: The surprise organelle of the decade. Science Signaling. 4:55 mr1.
Straschil, U., Talman, A., Ferguson, D., Bunting, K., Xu, Z., Bailes, L., Coates, J., Holder, T., Smith, E.F. and R. Tewari. (2010) The Armadillo repeat protein PF16 is essential for flagellar structure and function in Plasmodium male gametes. PLoS ONE . Vol. 5:10 e12901
DiPetrillo, C., and E.F. Smith. (2010) Pcdp1 is a central apparatus protein that binds Ca 2+ -calmodulin and regulates ciliary motility. Journal of Cell Biology 189(3):601-612
Lee Alan Witters

Hurley, RL, Barre, LK, Wood, SD, Anderson, KA, Kemp, BE, Means, AR and Witters, LA (2006), Regulation of AMP-activated protein kinase by multi-site phosphorylation in response to agents that elevate cellular cAMP, J. Biol. Chem. 281, 36662-36672,
Barre, L, Richardson, C, Hirshman, MF, Brozinick, Fiering, S, Kemp, BE, Goodyear, LJ and Witters, LA (2007) A genetic model for the chronic activation of skeletal muscle AMP-activated protein kinase leads to glycogen accumulation, Am J Physiol Endo Metab, 292, E802-811
Gleason, CE, Lu, D, Witters, LA, Newgard, CB and Birnbaum, MJ, (2007) The role of AMPK and mTOR in nutrient sensing in pancreatic β-cells, J. Biol. Chem., 282, 10341-103451
Roecki, KSC, Hirshman, MF, Brandauer, J, Fujii, N.. Witters, LA and Goodyear, LJ (2007), Skeletal Muscle Adaptation to Exercise Training AMP-Activated Protein Kinase Mediates Muscle Fiber Type Shift, Diabetes, 56, 2062-2069
Anderson, KA, Riber, T, Lin, F, Noeldner, P, Green, M, Murhlbauer, MJ, Witters LA, Kemp, BE and Means, AM (2008) A role for CaMKK2 in hypothalamic regulation of energy balance, Cell Metabolism, 7, 377-388
Folmes, KD, Witters LA, Allard, MF, Young ME and Dyck, JRB (2007) The AMPK gamma-1 R70Q mutant regulated multiple metabolic and growth pathways in the cardiac myocyte, Am J Physiol Heart Circ Physiol., 293(6):H3456-64
Vadasz, I, Dada, LA, Briva, A, C hen, J, Welch, LC, Diaz, I, Lecuona, E, Chandel, NS, Witters, LA, Seeger, W and Sznajder, JI (2008) AMP-activated protein kinase mediates the high CO2-induced alveolar epithelial dysfunction by down-regulating the Na,K-ATPase, J Clin Invest, 118(2):752-62
Ho, RC, Fujii, N, Witters, La, Hirshman, MF and Goodyear, LJ (2007) Dissociation of AMP-activated protein kinase and p38 mitogen-activated protein kinase signaling in skeletal muscle, Biochem Biophys Res Comm, 362(2):354-9
Iseli, TJ, Oakhill, JS, Bailey, MF, Wee, S, Walter, M, van Denderen, BJ, Castelli, LA, Katsis, F, Witters, LA, Stapeton, D, Macauley, SL, Mickhell, BJ and Kemp, BE (2008) AMPK subunit interactions: β1 Thr-263 and Tyr-267 are required for β1:γ1 association, J Biol Chem, 283(8):4799-807
Witters, LA (2008) A Diligent Effort, Dartmouth Medicine, 32, 52-65
Witters, LA, Luciano, M, Williams, C and Yang, J (2008), Diabetes Detective, Dartmouth Medicine, 33, 36-41
Gusarova, GA, Dada, LA, Kelly, A, Brodie, C, Witters, LA and Sznajder, JI (2009) α-1-AMP-activated protein kinase (AMPK) regulates hypoxia-induced NaK-ATPase encocytosis via direct phosphorylation of PKCζ, Mol Cell Biol, 29, 3455-3464
Joly, E, Roduit, R, Peyot, M-L, Habinowski, SA, Ruderman, N, Witters, LA and Prentki, M (2009) Glucose represses peroxisome proliferator-activated receptor α gene expression via AMP-activated protein kinase but not via p38 mitogen-activated protein kinase in the pancreatic β-cell, J Diabetes, 1. 263-272
Baumrin, E, Corbett, W, Kulkarni, A and Witters LA (2009) The most unspeakable terror, Dartmouth Medicine, 34, 44-57
Olga Zhaxybayeva

Roman Kogay, Sonja Koppenhöfer, J Thomas Beatty, Jens H Kuhn, Andrew S Lang, Olga Zhaxybayeva (2022): "Formal recognition and classification of gene transfer agents as viriforms." Virus Evolution, 8: veac100.
Roman Kogay and Olga Zhaxybayeva (2022): "Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents." mSystems, 7: e0089222.
Zhengshuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke, and Olga Zhaxybayeva (2021): "Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus", ISME Journal, 15: 2843-2864
Emma S. Esterman, Yuri I. Wolf, Roman Kogay, Eugene V. Koonin, and Olga Zhaxybayeva (2021): "Evolution of DNA packaging in gene transfer agents", Virus Evolution, 7: veab015.
Roman Kogay, Yuri I Wolf, Eugene V Koonin, and Olga Zhaxybayeva (2020): "Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents", mBio, 11:e01206-20.
Chase WR, Zhaxybayeva O, Rocha J, Cosgrove DJ, Shapiro LR. (2020) "Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution." New Phytol., 226:921-938.
Kogay R, Neely TB, Birnbaum DP, Hankel CR, Shakya M, Zhaxybayeva O. (2019): "Machine-learning classification suggests that many alphaproteobacterial prophages may instead be gene transfer agents", Genome Biol Evol., evz206.
Bauer KM, Dicovitsky R, Pellegrini M, Zhaxybayeva O, Ragusa MJ. (2019): "The structure of a highly-conserved picocyanobacterial protein reveals a Tudor domain with an RNA-binding function", J Biol Chem., 294:14333-14344.
Stephen M. J. Pollo, Abigail A. Adebusuy, Timothy J. Straub, Julia M. Foght, Olga Zhaxybayeva, Camilla L. Nesbo (2017) "Genomic insights and temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20C to 79C", Extremophiles, 21:963-979.
Complete list of publications is available at https://labofoz.host.dartmouth.edu/2.0/publications-2/