https://www.sciencedirect.com/science/article/abs/pii/S095506742200014X?via%3Dihub

Valtonen, A., A. Hirka, L. Szocs, M. P. Ayres, H. Roininen, and G. Csoka. 2017. Long-term species loss and homogenization of moth communities in Central Europe. Journal of Animal Ecology 86:730-738. doi: 10.1111/1365-2656.12687

Lovett, Gary M., Marissa Weiss, Andrew M. Liebhold, Thomas P. Holmes, Brian Leung, Kathy-Fallon Lambert, David A. Orwig, Faith T. Campbell, Jonathan Rosenthal,Deborah G. McCullough, Radka Wildova, Matthew P. Ayres, Charles D. Canham, David R. Foster, Shannon L. LaDeau, Troy Weldy. 2016. Nonnative forest insects and pathogens in the United States: impacts and policy options. Ecological Applications 26: 1437-1455, doi: 10.1890/15-1176.1

Valtonen, Anu, Reima Leinonen, Juha Pöyry, Heikki Roininen, Jukka Tuomela, and Matthew P. Ayres. 2014. Is climate warming more consequential towards poles? The phenology of Lepidoptera in Finland. Global Change Biology 20:16-27

Lombardero, Maria J., Matthew P. Ayres, Flora E. Krivak-Tetley, and Katrin N.E. Fitza. 2016. Population biology of the European woodwasp, Sirex noctilio, in Galicia, Spain. Bulletin of Entomological Research 106: 569-580.

Culler, Lauren E., Matthew P. Ayres, and Ross A. Virginia. 2015. In a warmer Arctic, mosquitoes avoid increased mortality from predators by growing faster. Proceedings of the Royal Society B 282: 20151549.

Symes, Laurel. B. , Nancy Serrell, and M. P. Ayres. 2015. A practical guide for mentoring scientific inquiry. Bulletin of the Ecological Society of America 96(2): 352-367.

Weed, Aaron S., M.P. Ayres, and Jeffrey A. Hicke. 2013. Consequences of climate change for biotic disturbances in North American forests. Ecological Monographs 83:441–470.

Martinson, S. J., T. Ylioja, B. T. Sullivan, R. F. Billings, and M. P. Ayres. 2013. Alternate attractors in the population dynamics of a tree-killing bark beetle. Population Ecology 55:95-106.

Valtonen, A., F. Molleman, C.A. Chapman, J.R. Carey, M.P. Ayres, and H. Roininen. 2013. Tropical phenology: bi-annual rhythms and interannual variation in an Afrotropical butterfly assemblage. Ecography, in press.

Marini, L., M. P. Ayres, A. Battisti, and M. Faccoli. 2012. Climate affects severity and altitudinal distribution of outbreaks in an eruptive bark beetle. Climatic Change 115:327-341.

Shi, Peijan, Bo Wang, MP Ayres, Feng Gea, Ling Zhong, and Bai-Lian Li. 2012. Influence of temperature on the northern distribution limits of Scirpophaga incertulas Walker (Lepidoptera: Pyralidae) in China. Journal of Thermal Biology 37:130-137.

Garnas, JR., DR Houston, MP Ayres, and C. Evans. 2011. Disease ontogeny overshadows effects of climate and species interactions on population dynamics in a nonnative forest disease complex. Ecography 34: 1-10.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Garnas, JR., MP Ayres, AM Liebhold, and C Evans. 2011. Subcontinental impacts of an invasive tree disease on forest structure and dynamics. Journal of Ecology 99: 532-541.

Stange, E. E., M. P. Ayres, and J. A. Bess. 2011. Concordant population dynamics of Lepidoptera herbivores in a forest ecosystem. Ecography 34: 772-779

Valtonen, A, MP Ayres, H Roininen, J Pöyry and R Leinonen. 2011. Environmental controls on the phenology of moths - predicting plasticity and constraint under climate change. Oecologia 165: 237-248.

Seppälä, R., A. Buck, and P. Katila. (eds.). 2009. Adaptation of Forests and People to Climate Change: A Global Assessment Report. International Union of Forest Research Organizations, Helsinki. IUFRO World Series Volume 22. 224 p.

Lombardero, M.J., P. Vázquez-Mejuto, and M.P. Ayres. 2008. Role of plant enemies in the forestry of indigenous versus nonindigenous pines. Ecological Applications 18: 1171-1181.

Martinson, S.J., R.W. Hofstetter, and M.P.Ayres. 2007. Why does longleaf pine have low susceptibility to southern pine beetle? Canadian Journal of Forest Research 37: 1966–1977.

Friedenberg, N.A., J.A. Powell and M.P. Ayres. 2007 Synchrony's double edge: transient dynamics and the Allee effect in stage-structured populations. Ecology Letters 10: 564–573.

Tran , J.K., T. Ylioja, R. Billings, J. Régnière, and M.P. Ayres. 2007. Impact of minimum winter temperatures on the population dynamics of Dendroctonus frontalis (Coleoptera: Scolytinae)  Ecological Applications 17: 882-899.

Reynolds, L.V., M.P. Ayres, T.G. Siccama, and R.T. Holmes. 2007. Climatic effects on caterpillar fluctuations in northern hardwood forests. Canadian Journal of Forest Research 37: 481-491

Hofstetter, R.W., J.T. Cronin, K.D. Klepzig, J.C. Moser, and M.P. Ayres. 2006. Antagonisms, mutualisms and commensalisms affect outbreak dynamics of the southern pine beetle. Oecologia 147: 679-691.

Lombardero, M.J., M. P. Ayres, R. W. Hofstetter, J.C. Moser, and K.D. Klepzig. 2003. Strong indirect interactions of Tarsonemus mites (Acarina, Tarsonemidae) and Dendroctonus frontalis (Coleoptera:Scolytidae).Oikos 102: 243-252.

Lombardero, M.J., M.P. Ayres, P.L. Lorio, Jr., and J.J. Ruel. 2000. Environmental effects on constitutive and inducible resin defenses of loblolly pine.Ecology Letters 3:329-339.

Ayres, M.P., Wilkens, R.T., Ruel, J.J., M.J. Lombardero, and E. Vallery. 2000. Nitrogen budgets of phloem-feeding bark beetles with and without symbiotic fungi (Coleoptera: Scolytidae).Ecology 81:2198-2210.

Ruel, J. J., and M.P. Ayres. 1999. Jensen's inequality predicts effects of environmental variation. Trends in Ecology and Evolution 14:361-366.

Ayres, M. P., T. P. Clausen, S. F. MacLean, Jr., A. M. Redman, and P. B. Reichardt. 1997. Diversity of structure and anti-herbivore activity in condensed tannins.Ecology 78: 1696-1712.

Ayres, M.P., and J.M. Scriber. 1994. Local adaptation to regional climates in Papilio canadensis (Lepidoptera:Papilionidae).Ecological Monographs 64: 465-482.

Schamel, D., and M. P. Ayres. 1992. The "minds-on" approach: student creativity and personal involvement in the undergraduate science laboratory. Journal of College Science Teaching 21:226-229.

Ayres, M.P. and S.F. MacLean, Jr. 1987. Development of birch leaves and the growth energetics of Epirrita autumnata (Geometridae).Ecology 68:558-568.

Perkins, A.T., Das, T.M., Panzera, L.C. and Bickel, S.E.  (2016) Oxidative stress in oocytes during midprophase induces premature loss of cohesion and chromosome segregation errors.  PNAS: doi: 10.1073/pnas.1612047113.

Giauque, C.C. and Bickel, SE. (2016)  Heterochromatin-Associated Proteins HP1a and Piwi Collaborate to Maintain the Association of Achiasmate Homologs in Drosophila Oocytes. Genetics.: May;203(1):173-89. doi: 10.1534/genetics.115.186460.

Weng, K.A., Jeffreys, C.A. and Bickel, S.E. (2014).  Rejuvenation of meiotic cohesion in oocytes during prophase I is required for chiasma maintenance and accurate chromosome segregation.  PLoS Genet.: Sep 11;10(9):

Subramanian, V.V. and Bickel, S.E. (2009) Heterochromatin-mediated association of achiasmate homologues declines with age when cohesion is compromised. Genetics.: 181:1207-1218.

Subramanian, V.V. and Bickel, S.E. (2008) Aging predisposes oocytes to meiotic nondisjunction when the cohesin subunit Smc1 is reduced. PLoS Genet.: Nov;4(11):e1000263. doi: 10.1371/journal.pgen.1000263.

Page, S.L., Khetani, R.S.,Lake, C.M., Nielsen, R.J., Jeffress J.K., Bickel, S.E., and Hawley, R.S. (2008) corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes . PLoS Genet.: 4(9): e1000194. doi: 10.1371/journal.pgen.1000194.

Gause, M., Webber, H., Misulovin, Z., Haller, G., Rollins, R.A., Eissenberg, J.C., Bickel, S.E. and Dorsett, D. (2008) Functional links between Drosophila Nipped-B and cohesin in somatic and meiotic cells. Chromosoma: 17:51-66

Khetani, R. and Bickel, S.E. (2007) Regulation of cohesion and chromosome core morphogenesis during pachytene in Drosophila oocytes. Journal of Cell Science: 120: 3123-3137.

Bickel, S E, "Aging (Not So) Gracefully," Nature Genetics: 37 (2005) 1303-1304.

Webber, H., Howard, L. and Bickel S.E. (2004) The cohesion protein ORD is required for homolog bias during meiotic recombination. Journal of Cell Biology: 164:819-829.

Balicky, E.M., Young, L., Orr-Weaver, T.L. and Bickel, S.E. (2004) A proposed role for the Polycomb Group protein dRING in meiotic sister-chromatid cohesion. Chromosoma: 112:231-239.

Jeffreys, C.A, Burrage, P.S, and Bickel, S.E. (2003) A model system for increased meiotic nondisjunction in older oocytes. Current Biology 13:498-503.

Balicky, E.M., Endres, M.W. Lai, C, and Bickel, S.E. (2002) Meiotic cohesion requires accumulation of ORD on chromosomes prior to condensation. Mol. Biol. Cell: 21:3890-3900.

Bickel, S.E., Orr-Weaver, T.L. and Balicky, E.M. (2002) The sister-chromatid cohesion protein ORD is required for chiasma maintenance in Drosophila oocytes. Current Biology: 12:925-929.

Calsbeek, R. and Careau, V. (2019) Survival of the fastest: tradeoffs structure the multivariate optimization of performance phenotypes. Medicine and Science in Sports and Exercise

Brady, S.P., Zamora-Camacho, F.J., Eriksson, F.A.A., Goedert, D., Comas, M., Calsbeek, R. (2019) Fitter frogs from polluted ponds: The complex impacts of human-altered environments. Evolutionary Applications. Jan 18;12(7):1360-1370

Erritouni, Y.R., Reinke, B.A., Calsbeek, R. (2018) A novel body coloration phenotype in Anolis sagrei: Implications for physiology, fitness, and predation. PLoS One. Dec 31;13(12):e0209261

Reinke, B.A., Erritouni, Y., Calsbeek, R. (2018) Maternal allocation of carotenoids to eggs in an Anolis lizard.  Comparative Biochemistry and Physiology Part A: Molecular Integrative Physiology. Apr;218:56-62.

Logan, M.L., Duryea, M.C., Molnar, O.R.,  Kessler, B., and Calsbeek, R. (2016)  Spatial variation in climate mediates gene flow across an island archipelago. Evolution  10: 2395-2403

Calsbeek, R., McPeek, M.A. (2016) On the utility of meta-analyses in the study of natural selection. Journal of Evolutionary Biology. Oct;29(10):1907-1908.

Calsbeek, R., Duryea, M.C., Goedert, D., Bergeron, P., and Cox, R.M. (2015) Intralocus sexual conflict, adaptive sex allocation, and the heritability of fitness. Journal of Evolutionary Biology 28: 1975-1985.

Calsbeek, R., and Kuchta S.R. (2011) Predator mediated selection and impact of developmental stage on viability in wood frog tadpoles (Rana sylvatica). BMC Evolutionary Biology 11: 353-364.

Calsbeek, R., and Cox, R.M. (2010) Experimentally assessing the relative importance of predation and competition as agents of natural selection. Nature 465: 613-616.

Dijkstra, J.A., K.L. Buckman, D. Ward, D.W. Evans, M. Dionne, C.Y. Chen. 2013. Experimental and natural warming elevates mercury concentrations in estuarine fish. PLOS ONE  8(3)e58401.

Schartup, A.T., R.P. Mason, P.H. Balcolm, T.A. Hollweg, C.Y. Chen. 2013. Methylmercury production in pristine and anthropogenically impacted sediments. Environmental Science and Technology  2013; 47:695-700. (PMCID in process)

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Schmitt, C.V., Serrell, N.S., and Sunderland, E.M. Sources to Seafood: Mercury Pollution in the Marine Environment. Hanover, NH: Toxic Metals Superfund Research Program, Dartmouth College 2012.

Driscoll, C.T., Chen, C.Y., Hammerschmidt, C.R., Mason, R.P., Gilmour, C.C., Sunderland, E.M., Greenfield, B.K., Buckman, K.L., Lamborg, C. H. 2012. Nutrient supply and mercury dynamics in marine ecosystems: A conceptual model. Environmental Research 119: 118-131.

Chen, C.Y., Driscoll, C.T., Lambert, K.F., Mason, R.P., Rardin, L.R., Serrell, N.S., and Sunderland, E.M.  2012. Marine mercury fate: From sources to seafood consumers. Environmental Research 119:1-2.

Glaholt, S.T., Chen, C.Y., Demidenko, E., Bugge, D.M., Folt, C. L., Shaw, J.R. 2012. Adaptive iterative design (AID): A novel approach for evaluating the effects of multiple stressor on aquatic organisms. Science of the Total Environment 432: 57-64. doi:10.1016/j.scitotenv.2012.05.074

Jackson, B.P., Bugge, D., Ranville, J.F., Chen, C.Y. 2012. Bioavailability toxicity, and Bioaccumulation of quantum dot nanoparticles to the amphipod Leptocheirus plumulosus. Environmental Science and Technology 46: 5550-5556.

Sunderland, E., Amirbahman, A., Burgess, N.M., Dalziel, J., Harding, G., Jones, S.H., Kamai, E., Karagas, M.R., Shi, X., Chen, C.Y. 2012. Mercury sources and fate in the Gulf of Maine. Environmental Research 119:27-41.

Brooks, R.T., Eggert, S.L., Nislow, K.H., Kolka, R.K., Chen, C.Y., Ward, D.M. 2012. Preliminary assessment of mercury accumulation in Massachusetts and Minnesota seasonal forest pools. Wetlands 32: 653-663. DOI 10.1007/s13157-012-0298-4.

Ward, D.M., Mayes, B, Sturup, S. Folt, C.L., Chen, C.Y. 2012. Assessing element-specific patterns of bioaccumulation across New England lakes. Science of the Total Environment 421-422: 230-237.

Chen, C.Y., Driscoll, C.T., Kamman, N.C. Mercury Hotspots in Freshwater Ecosystems: Drivers, Processes, and Patterns. 2012. In: Mercury in the Environment: Pattern and Process, (ed.) M. Bank, University of California Press, pp. 143-166.

Chen, C., Kamman, N., Williams, J., Bugge, D., Taylor, V., Jackson, B., Miller, E. 2012. Spatial and temporal variation in mercury bioaccumulation by zooplankton in Lake Champlain. Environmental Pollution 161: 343-349.

Miller, E.K., Chen, C., Kamman, N., Shanley, J., Chalmers, A., Jackson, B., Taylor, V., Smeltzer, E., Stangel, P., Shambaugh, A. 2011. Mercury in the pelagic food web of Lake Champlain. Ecotoxicology (in press) DOI 10.1007/s10646-011-0829-4.

Fisher, N.S. and Chen, C.Y. 2011. Interdisciplinary approaches for addressing marine contamination issues. Environmental Conservation 38: 187-198.

Williams, J.J., J. Dutton, C.Y. Chen, N.S. Fisher. 2010. Metal (As, Cd, Hg, and CH3Hg) bioaccumulation from water and food by the benthic amphipod Leptocheirus plumulosus. Environ. Toxicol. Chem. 29: 1755-1761.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2010. Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams. Environ. Sci. Techol. 44: 3245-3251.

Ward, D.M., K.H. Nislow, C.Y. Chen, and C.L. Folt. 2009. Rapid, efficient growth reduces mercury concentrations in stream-dwelling Atlantic salmon. Trans. Amer. Fish. Soc. 139:1-10. DOI: 10.1577/T09-032.1.

Chen, C.Y. 2009. China's mercury problem: A sleeping giant? Woodrow Wilson International Center for Scholars. China Environment Series 2008/9 10:57-62.

Chen, C., Dionne, M., Mayes, B., Ward, D., Sturup, S., Jackson, B. 2009. Mercury bioavailability and bioaccumulation in estuarine food webs in the Gulf of Maine. Environ. Sci. Technol. 43: 1804-1810. DOI: 10.1021/es8017122.

Evers, D.C., Mason, R.P., Kamman, N.C., Chen, C.Y., Bogomolni, A.L., Taylor, D.L., Hammerschmidt, C.R., Jones, S.H., Burgess, N.M., Munney, K. Parson, K.C. 2008. An integrated mercury monitoring program for temperate estuarine and marine ecosystems on the North American Atlantic Coast. Ecohealth 5: 426-441. DOI: 10.1007/s10393-008-0205-x

Chen, C., Amirbahman, A., Fisher, N., Harding, G., Lamborg, C., Nacci, D., Taylor, D. 2008. Methylmercury in marine ecosystems: spatial patterns and processes of production, bioaccumulation, and biomagnification. Ecohealth 5: 399-408. DOI: 10.1007/s10393-008-0201-1.

Chen, C.Y., Serrell, N., Evers, D.C., Fleishman, B.J., Lambert, K.F., Weiss, J., Mason, R.P., Bank, M.S.  2008. Methylmercury in marine ecosystems: From sources to seafood consumers – A workshop report.  Environ. Health Perspectives 116: 1706-1712. DOI:10.1289/ehp.1121.

Chen, C.Y., Hathaway, K.M., Thompson, D.G., Folt, C.L. 2008. Multiple stressor effects of Release, pH, and food on the zooplankton, Simocephalus vetulus and larval amphibian, Rana pipiens. Ecotoxicol. and Environ. Safety 71: 209-218.

Chen, C.Y., Pickhardt, P.C., Xu, M.Q., Folt, C.L. 2008.  Mercury and arsenic bioaccumulation and eutrophication in Baiyandian Lake, China. Water, Air, Soil Poll. DOI 10.1007/s11270-007-9585-8.

Karimi, R., Chen C.Y., Fisher N.S., Pickhardt P.C., Folt C.L. 2007. Stoichiometric controls of mercury dilution by growth. Proceedings of the National Academy of Sciences 104:7477-7482.

Evers, D.C., Han, Y.J., Driscoll, C.T., Kamman, N.C., Goodale, M.W., Lambert, K.F., Holsen, T.M., Chen, C.Y., Clair, T.A., Butler, T. 2007. Identification and evaluation of biological hotspots of mercury in the Northeastern U.S. and Eastern Canada. Bioscience 57:29-43.

Driscoll, C.T., Han, Y.J., Chen, C.Y., Evers, D.C., Lambert, K.F., Holsen, T., Kamman, N.C., Munson, R. 2007. Mercury contamination in remote forest and aquatic ecosystems in the Northeastern U.S.: sources, transformations and management options. Bioscience 57:17-28.

Chen, C.Y., Stemberger, R.S., Kamman, N.C., Mayes, B.,M.,  Folt, C.L. 2005. Patterns of Hg bioaccumulation and transfer in aquatic food webs across multi-lake studies in the Northeast US. Ecotoxicology 14:135-147.

Chen, C.Y., Folt, C.L. 2005. High plankton biomass reduces mercury biomagnification. Environ. Sci. Technol. 39: 115-121.

Pickhardt, P.C., Folt, C.L., Chen, C.Y., Klaue, B. and Blum, J.D.  2002.  Algal blooms reduce the uptake of methylmercury in freshwater food webs.  Proceedings of the National Academy of Sciences 99: 4419-4423.

Walter, J.A., L.G. Shoemaker, N.K. Lany, M.C.N. Castorani, S.B. Fey, J.C. Dudney, L. Gherardi, C. Portales-Reyes, A.L. Rypel, K.L. Cottingham, K.N. Suding, D.C. Reuman, and L.M. Hallett. 2021. The spatial synchrony of species richness and its relationship to ecosystem stability. Ecology 102(11):e03486. DOI: 10.1002/ecy.3486

Trout-Haney, J.V. and K.L. Cottingham. 2021. Microcystins in planktonic and benthic communities of Greenlandic lakes. Ecosphere 12(6):e03539. DOI: 10.1002/ecs2.3539

Rubin, H.J., D.A. Lutz, B.G. Steele, K.L. Cottingham, K.C. Weathers, M.J. Ducey, M. Palace, K.M. Johnson, and J.W. Chipman. 2021. Remote sensing of lake water clarity: performance and transferability of both historical algorithms and machine learning. Remote Sensing 13(8):1434. DOI 10.3390/rs13081434

Cottingham, K.L., K.C. Weathers, H.A. Ewing, M.L. Greer, and C.C. Carey. 2021. Predicting the effects of climate change on freshwater cyanobacterial blooms requires consideration of the complete cyanobacterial life cycle. Journal of Plankton Research 43(1):10-19. DOI 10.1093/plankt/fbaa059

Trout-Haney, J.V., A.L. Ritger, and K.L. Cottingham. 2021. Benthic cyanobacteria of the genus Nostoc are a source of microcystins in Greenlandic lakes and ponds. Freshwater Biology 66:266-277. DOI 10.1111/fwb.13636

Cottingham, K.L., H.A. Ewing, M.L. Greer, C.C. Carey, and K.C. Weathers. 2015. Cyanobacteria as drivers of lake nitrogen and phosphorus cycling. Ecosphere 6(1):1. Available at http://dx.doi.org/10.1890/ES14-00174.1.

Cathepsin proteases mediate photoreceptor cell degeneration in Drosophila. Kinser RD, Dolph PJ. Neurobiol Dis. 2012 Jun;46(3):655-62. doi: 10.1016/j.nbd.2012.03.004. Epub 2012 Mar 9. PMID: 22426392[Pu bMed - indexed for MEDLINE]

Gavin, B A, M J Dolph, N R Deleault, J C Geoghegan, V Khurana, M B Feany, P J Dolph, and S Supattapone, “Accelerated Accumulation of Misfolded Prion Protein and Spongiform Degeneration in a Drosophila Model of Gerstmann-Sträussler-Scheinker Syndrome,” The Journal of Neuroscience , 26:48 (November 2006) 12408-12414.

Alternative pathway of cell death in Drosophila mediated by NF-κB transcription factor Relish. Chinchore Y, Gerber GF, Dolph PJ. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E605-12. doi: 10.1073/pnas.1110666109. Epub 2012 Feb 10. PMID: 22328149 [PubMed - indexed for MEDLINE]

Characterization of two dominant alleles of the major rhodopsin-encoding gene ninaE in Drosophila. Mitra A, Chinchore Y, Kinser R, Dolph PJ. Mol Vis. 2011;17:3224-33. Epub 2011 Dec 14. PMID: 22194648 [PubMed - indexed for MEDLINE]

The Drosophila SK channel (dSK) contributes to photoreceptor performance by mediating sensitivity control at the first visual network. Abou Tayoun AN, Li X, Chu B, Hardie RC, Juusola M, Dolph PJ. J Neurosci. 2011 Sep 28;31(39):13897-910. doi: 10.1523/JNEUROSCI.3134-11.2011. PMID: 21957252 [PubMed - indexed for MEDLINE]

Cell-autonomous requirement for DNaseII in nonapoptotic cell death. Bass BP, Tanner EA, Mateos San Martín D, Blute T, Kinser RD, Dolph PJ, McCall K. Cell Death Differ. 2009 Oct;16(10):1362-71. doi: 10.1038/cdd.2009.79. Epub 2009 Jun 26. PMID: 19557011 [PubMed - indexed for MEDLINE]

Accumulation of rhodopsin in late endosomes triggers photoreceptor cell degeneration. Chinchore Y, Mitra A, Dolph PJ. PLoS Genet. 2009 Feb;5(2):e1000377. doi: 10.1371/journal.pgen.1000377. Epub 2009 Feb 13. PMID: 19214218 [PubMed - indexed for MEDLINE]

The role of carcinine in signaling at the Drosophila photoreceptor synapse. Gavin BA, Arruda SE, Dolph PJ. PLoS Genet. 2007 Dec;3(12):e206. PMID: 18069895 [PubMed - indexed for MEDLINE]

Accelerated accumulation of misfolded prion protein and spongiform degeneration in a Drosophila model of Gerstmann-Sträussler-Scheinker syndrome. Gavin BA, Dolph MJ, Deleault NR, Geoghegan JC, Khurana V, Feany MB, Dolph PJ, Supattapone S. J Neurosci. 2006 Nov 29;26(48):12408-14. PMID: 17135402 [PubMed - indexed for MEDLINE]

An essential role for endocytosis of rhodopsin through interaction of visual arrestin with the AP-2 adaptor. Orem NR, Xia L, Dolph PJ. J Cell Sci. 2006 Aug 1;119(Pt 15):3141-8. Epub 2006 Jul 11. PMID: 16835270 [PubMed - indexed for MEDLINE]

Molecular cloning of the pawn locus from Drosophila melanogaster. Arruda SE, Dolph PJ. Gene. 2003 May 22;310:169-73. PMID: 12801644 [PubMed - indexed for MEDLINE]

Post-transcriptional suppression of pathogenic prion protein expression in Drosophila neurons. Deleault NR, Dolph PJ, Feany MB, Cook ME, Nishina K, Harris DA, Supattapone S. J Neurochem. 2003 Jun;85(6):1614-23. PMID: 12787080

Epitope masking of rhabdomeric rhodopsin during endocytosis-induced retinal degeneration. Orem NR, Dolph PJ. Mol Vis. 2002 Dec 2;8:455-61. PMID: 12486400

Arrestin: roles in the life and death of retinal neurons. Dolph PJ. Neuroscientist. 2002 Aug;8(4):347-55. Review. PMID: 12194503

Orem, N R, and P J Dolph, “Loss of the Phospholipase C Gene Product Induces Massive Endocytosis of Rhodopsin and Arrestin in Drosophila Photoreceptors,” Vision Research , 42:4 (February 2002) 497-505.

The formation of stable rhodopsin-arrestin complexes induces apoptosis and photoreceptor cell degeneration. Alloway PG, Howard L, Dolph PJ. Neuron. 2000 Oct;28(1):129-38. PMID: 11086989

A role for the light-dependent phosphorylation of visual arrestin. Alloway PG, Dolph PJ. Proc Natl Acad Sci U S A. 1999 May 25;96(11):6072-7. PMID: 10339543

An eye-specific G beta subunit essential for termination of the phototransduction cascade. Dolph PJ, Man-Son-Hing H, Yarfitz S, Colley NJ, Deer JR, Spencer M, Hurley JB, Zuker CS. Nature. 1994 Jul 7;370(6484):59-61. PMID: 8015606

Arrestin function in inactivation of G protein-coupled receptor rhodopsin in vivo. Dolph PJ, Ranganathan R, Colley NJ, Hardy RW, Socolich M, Zuker CS. Science. 1993 Jun 25;260(5116):1910-6. PMID: 8316831

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Translation by the adenovirus tripartite leader: elements which determine independence from cap-binding protein complex. Dolph PJ, Huang JT, Schneider RJ. J Virol. 1990 Jun;64(6):2669-77. Erratum in: J Virol 1990 Aug;64(8):4042. PMID: 1692346

Secondary structure analysis of adenovirus tripartite leader. Zhang Y, Dolph PJ, Schneider RJ. J Biol Chem. 1989 Jun 25;264(18):10679-84. PMID: 2732243

The adenovirus tripartite leader may eliminate the requirement for cap-binding protein complex during translation initiation. Dolph PJ, Racaniello V, Villamarin A, Palladino F, Schneider RJ. J Virol. 1988 Jun;62(6):2059-66. PMID: 2835510

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Mu, S., Yamaji, N., Sasaki, A., Luo, L., Du, B., Che, J., Shi, H., Zhao, H., Huang, S., Deng, F., Shen, Z., Guerinot, M.L., Zheng, L., Ma, J.F. (2020) A transporter for delivering zinc to the developing tiller bud and panicle in rice.  Plant J. Nov 9. doi: 10.1111/tpj.15073. PMID: 33169459 

Fischer, S., Sánchez-Bermejo, E., Xu, X., Flis, P., Ramakrishna, P., Guerinot, M.L., Zhao, F.J., Salt, D.E. (2020) Targeted expression of the arsenate reductase HAC1 identifies cell-type specificity of arsenic metabolism and transport in plant roots. J Exp Bot. Oct 10;72(2):415-25. doi: 10.1093/jxb/eraa465.  PMID: 33038235

Kim, S.A., LaCroix, I.S., Gerber, S.A., Guerinot, M.L. (2019) The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI.  Proc Natl Acad Sci U S A. Dec 10;116(50):24933-24942. doi: 10.1073/pnas.1916892116. . PMID: 31776249

Huang, X.Y., Liu, H., Zhu, Y.F., Pinson, S.R.M., Lin, H.X., Guerinot, M.L., Zhao, F.J., Salt, D.E. (2019) Natural variation in a molybdate transporter controls grain molybdenum concentration in rice. New Phytol. Oct 19. doi: 10.1111/nph.15546. PMID: 30339276

Nachman, K.E., Punshon, T., Rardin, L., Signes-Pastor, A.J., Murray, C.J., Jackson, B.P., Guerinot, M.L., Burke, T.A., Chen, C.Y., Ahsan, H., Argos, M., Cottingham, K.L., Cubadda, F., Ginsberg, G.L., Goodale, B.C., Kurzius-Spencer, M., Meharg, A.A., Miller M.D., Nigra, A.E., Pendergrast, C.B., Raab, A., Reimer, K., Scheckel, K.G., Schwerdtle, T., Taylor, V.F., Tokar, E.J., Warczak, T.M. and Karagas, M.R. (2018) Opportunities and Challenges for Dietary Arsenic Intervention. Environ Health Perspect. Aug;126(8):84503. doi: 10.1289/EHP3997. PMID: 30235424

Ricachenevsky, F.K., Punshon, T., Lee, S., Oliveira, B.H.N., Trenz, T.S., Maraschin, F.D.S., Hindt, M.N., Danku, J., Salt, D.E., Fett, J.P. and Guerinot, M.L. (2018) Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7. Front Plant Sci. Jul 3;9:865. doi: 10.3389/fpls.2018.00865. eCollection 2018. PMID: 30018622

Chu, H.H., Car, S., Socha, A.L., Hindt, M.N., Punshon, T. and Guerinot, M.L. (2017) The Arabidopsis MTP8 transporter determines the localization of manganese and iron in seeds. Sci Rep. Sep 8;7(1):11024. doi: 10.1038/s41598-017-11250-9. PMID: 28887568

Hindt, M.N., Akmakjian, G.Z., Pivarski, K.L., Punshon, T., Baxter, I., Salt, D.E. and Guerinot, M.L. (2017) BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana. Metallomics. 2017 Jul 19;9(7):876-890. doi: 10.1039/c7mt00152e. PMID: 28620661

Punshon, T., Jackson, B.P., Meharg, A.A., Warczak, T., Scheckel, K. and Guerinot, M.L. (2017) Understanding arsenic dynamics in agronomic systems to predict and prevent uptake by crop plants. Sci. Total Environ.  Mar 1;581-582:209-220. doi: 10.1016/j.scitotenv.2016.12.111. Epub 2016 Dec 30. Review. PMID: 28043702

Huang, X.Y., Deng, F., Yamaji, N., Pinson, S.R., Fujii-Kashino, M., Danku, J., Douglas, A., Guerinot, M.L., Salt, D.E., Ma, J.F. (2016) A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Nat. Commun. 2016 Jul 8;7:12138. doi: 10.1038/ncomms12138. PMID:27387148

Mary, V., Schnell Ramos, M., Gillet, C., Socha, A.L., Giraudat, J., Agorio, A., Merlot, S., Clairet, C., Kim, S.A., Punshon, T,., Guerinot, M.L., Thomine, S.  (2015) Bypassing Iron Storage in Endodermal Vacuoles Rescues the Iron Mobilization Defect in the natural resistance associated-macrophage protein3natural resistance associated-macrophage protein4 Double Mutant. Plant Physiol. 2015 Sep;169(1):748-59. doi: 10.1104/pp.15.00380. Epub Jul 31. PMID: 26232490

Stanton, B.A., Caldwell, K., Congdon, C.B., Disney, J., Donahue, M., Ferguson, E., Flemings, E., Golden, M., Guerinot, M.L., Highman, J., James, K., Kim, C., Lantz, R.C., Marvinney, R.G., Mayer, G., Miller, D., Navas-Acien, A., Nordstrom, D.K., Postema, S., Rardin, L., Rosen, B., SenGupta, A., Shaw, J., Stanton, E., Susca, P. (2015) MDI Biological Laboratory Arsenic Summit: Approaches to Limiting Human Exposure to Arsenic. Curr Environ. Health Rep. Sep;2(3):329-37. doi: 10.1007/s40572-015-0057-9. PMID: 26231509

Zhai, Z., Gayomba, S.R., Jung, H.I., Vimalakumari, N.K., Piñeros, M., Craft, E., Rutzke, M.A., Danku, J., Lahner, B., Punshon, T., Guerinot, M.L., Salt, D.E., Kochian, L.V., Vatamaniuk, O.K. (2014) OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis. Plant Cell. May 27;26(5):2249-2264. PMID: 24867923

Socha, A. and M.L. Guerinot. (2014)  Mn-euvering manganese: the role of transporter gene family members in manganese uptake and mobilization in plants.  Front. Plant Sci. 5:106. doi: 10.3389/fpls.2014.00106

Norton, G.J., Douglas, A., Lahner, B., Yakubova, E., Guerinot, M.L., Pinson, S.R., Tarpley, L., Eizenga, G.C., McGrath, S.P., Zhao, F.J., Islam, M.R., Islam, S., Duan, G., Zhu, Y., Salt, D.E., Meharg, A.A., Price, A.H. (2014) Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites. PLoS One. Feb 25;9(2):e89685. doi: 10.1371/journal.pone.0089685. eCollection. PMID: 24586963

Hong, S., S.A. Kim, M.L. Guerinot and C.R. McClung.  2013.  Reciprocal interaction of the circadian clock with the Fe homeostasis network in Arabidopsis thaliana.  Plant Physiol. 163: 893-903. PMCID: PMC3561027

Schroeder, J.I., E. Delhaize, W.B. Frommer, M.L. Guerinot, M.J. Harrison, L. Herrera-Estrella, T. Horie, L.V. Kochian, R. Munns, N.K. Nishizawa, Y.-F. Tsay and D. Sanders.  2013.  Using membrane transporters to improve crops for sustainable food production.  Nature 497: 60-66.

Hosmani, P.S., T. Kamiya, J. Danku S. Naseer, N. Geldner, M.L. Guerinot and D.E. Salt.  2013.   A dirigent-domain containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root.  Proc. Natl. Acad. Sci. U.S.A.  110:14498-503

Zhang, M, S.R.M. Pinson, L. Tarpley, X. Huang, B. Lahner, E. Yakubova, M.L. Guerinot, and D.E. Salt.  2013.  Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain.  Theor. Appl. Genet.  10.1007/s00122-013-2207-5

Palmer, C., M.N. Hindt, H. Schmidt, S. Clemens and M.L. Guerinot.  2013.  MYB10 and MYB72 Are required for growth under iron-limiting conditions.  PLoS Genet.  9(11):e1003953

Bailey V.L., C.E. Hicks Pries, K. Lajtha. 2019. What do we know about soil carbon destabilization? Environmental Research Letters. https://doi.org/10.1088/1748-9326/ab2c11.

Hicks Pries C.E., B.N. Sulman, C. West, C. O'Neill, E. Poppleton, R.C. Porras, C. Castanha, B. Zhu, D.B. Wiedemeir, M.S. Torn. 2018. Root litter decomposition slows with soil depth. Soil Biology & Biochemistry 125: 105-114. https://doi.org/10.1016/j.soilbio.2018.07.002

Hicks Pries C.E., Castanha C., Porras R.C., Phillips C., Torn M.S. 2018. The whole-soil carbon flux in response to warming: Technical comment response. Science 359 (6378). DOI: 10.1126/science.aao0457.

Rasmussen C., Heckman K., Wieder W., Keiluweit M., Lawrence C., Asefaw-Berhe A., Blankinship J., Crow S., Druhan J., Hicks Pries C., Marin-Spiotta E., Plante A., Schaedel C., Schimel J., Sierra J., Thompson A., Wagai R. 2018. Beyond clay: towards an improved set of variables for predicting soil organic matter content. Biogeochemistry 137 (3): 297-306. https://doi.org/10.1007/s10533-018-0424-3.

Castanha, C., Zhu B., Hicks Pries C.E., Georgiou K., Torn M.S. 2018. Compensatory effects of heating, rhizosphere, and depth on soil moisture mediate decomposition of root litter in a Mediterranean grassland ecosystem. Biogeochemistry 137:267–279. doi.org/10.1007/s10533-017-0418-6.

Porras R.C., Hicks Pries C.E., Torn M.S., Nico P.S. 2018. Synthetic iron (hydr)oxide-glucose associations in subsurface soil: Effects on decomposability of mineral associated carbon. Science of the Total Environment 613-614C, 342-351. DOI: 10.1016/j.scitotenv.2017.08.290.

Hicks Pries C.E., Castanha C., Porras R.C., Torn M.S. 2017. The whole-soil carbon flux in response to warming. Science 355 (6332), 1420-1423. DOI: 10.1126/science.aal1319

Hicks Pries C.E., Bird J.A., Castanha C., Hatton P.J., Torn M.S. 2017. Long term decomposition: The influence of litter type and soil horizon on retention of plant carbon and nitrogen in soils. Biogeochemistry 134 (1-2), 5-16.

Porras R.C., Hicks Pries C.E., McFarlane K.J., Torn M.S. 2017. Association with pedogenic iron and aluminum: Effects on soil organic matter storage and stability in temperate forest soils. Biogeochemistry 133 (3), 333-345.

Hicks Pries, C.E., E.A.G. Schuur, S.M. Natali, K.G. Crummer. 2016. Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra. Nature Climate Change doi:10.1038/nclimate2830

Hicks Pries, C.E., R.S.P. Logtestijn, E.A.G. Schuur, S.M. Natali, J.H.C. Cornelissen, R. Aerts, E. Dorrepaal. 2015. Decadal warming causes a consistent and persistent shift from heterotrophic to autotrophic respiration in contrasting permafrost ecosystems. Global Change Biology 21 (12), 4508-4519 doi: 10.1111/gcb.13032

Torn, M.S., A. Chabbi, P. Crill, P.J. Hanson, I.A. Janssens, Y. Luo, C.H. Pries, C. Rumpel, M.W.I. Schmidt , J. Six, M. Schrumpf, and B. Zhu. 2015. A call for international soil experiment networks for studying, predicting, and managing global change impacts. SOIL 1, 575-582 doi:10.5194/soil-1-575-2015

Natali, S.M., E.A.G. Schuur, E. E. Webb, C.E. Hicks Pries, K.G. Crummer. 2014. Permafrost degradation stimulates carbon loss from experimentally warmed tundra. Ecology 95 (3) http://dx.doi.org/10.1890/13-0602.1.

Hicks Pries, C.E., E.A.G. Schuur, J.G. Vogel, S.M. Natali. 2013. Moisture drives surface decomposition in thawing tundra. Journal of Geophysical Research-Biogeosciences, doi: 10.1002/jgrg.20089.

Hicks Pries, C.E., Schuur E.A.G., Crummer K.G. 2013. Thawing permafrost increases old soil and autotrophic respiration in tundra: Partitioning ecosystem respiration using δ13C and ∆14C. Global Change Biology 19 (2) doi: 10.1111/gcb.12058.

Hicks Pries, C.E., E.A.G. Schuur, and K.G. Crummer. 2012. Holocene Carbon Stocks and Carbon Accumulation Rates Altered in Soils Undergoing Permafrost Thaw. Ecosystems 12 (1): 162-173.

Hicks Pries, C.E. and J. Hughes. 2012. Inquiring into familiar objects: An inquiry-based approach to introduce scientific vocabulary. Science Activities 49 (2): 64-69.

Hicks Pries, C.E. and J. Hughes. 2011. Powering the Future: A wind turbine design competition. Science Scope 35 (4): 24-30.

Natali, S. M., E.A.G. Schuur, C. Trucco, C.E. Hicks Pries, K. G. Crummer, and A.F. Baron Lopez. 2011. Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra. Global Change Biology 17 (3): 1394-1407.

Bame X and Hill RA. Mitochondrial network reorganization and transient expansion during oligodendrocyte generation Nature Communications. (2024) doi: 10.1038/s41467-024-51016-2 PMID: 39143079

Olveda GE, Barasa MN, and Hill RA. Microglial phagocytosis of single dying oligodendrocytes is mediated by CX3CR1 but not MERTK. Cell Reports. (2024) doi: 10.1016/j.celrep.2024.114385 PMID: 38935500

Chapman TW, Kamen Y, Piedra ET, and Hill RA. Oligodendrocyte maturation alters the cell death mechanisms that cause demyelination. The Journal of Neuroscience (2024) doi: 10.1523/JNEUROSCI.1794-23.2024 PMID: 38395617

Chapman TW, Olveda GE, Bame Xh, Pereira E, and Hill RA. Oligodendrocyte death initiates synchronous remyelination to restore cortical myelin patterns in mice. Nature Neuroscience (2023) doi: 10.1038/s41593-023-01271-1 PMID: 36928635, highlighted by Dartmouth News

Chapman TW and Hill RA. Myelin plasticity in adulthood and aging. Neuroscience Letters. (2020) 134645. PMID: 31765728

Hill RA#, Li AM, and Grutzendler J# Lifelong cortical myelin plasticity and age-related degeneration in the live mammalian brain. Nature Neuroscience. (2018) 21 (5), 683-695 PMID: 29556031, highlighted by Neuron, Nature Reviews Neuroscience and Yale News. #co-corresponding author

Hill RA, Damisah EC, Chen F, Kwan AC, and Grutzendler J. Targeted two-photon chemical apoptotic ablation of defined cell types in vivo. Nature Communications. (2017) 8,15837 PMID: 28621306.

Damisah EC*, Hill RA*, Tong L, Murray KN, and Grutzendler J. A fluoro-Nissl dye identifies pericytes as distinct vascular mural cells during in vivo brain imaging. Nature Neuroscience. (2017)  20(7), 1023-1032. PMID: 28504673, highlighted by Alzforum *co-first author

Hill RA*, Tong L*, Yuan P*, Murikinati S, Gupta S, and Grutzendler J. Regional blood flow in the normal and ischemic brain is controlled by arteriolar smooth muscle cell contractility and not by capillary pericytes. Neuron.  (2015) 87(1), 95-110. PMID: 26119027,  highlighted by Neuron, Alzforum, and ScienceNews. *co-first author

Hill RA and Grutzendler J. In vivo imaging of oligodendrocytes with sulforhodamine 101. Nature Methods.  (2014) 11(11), 1082-1083. PMID: 25357236

Hill RA#, Patel KD, Goncalves CM, Grutzendler J, and Nishiyama A# Modulation of oligodendrocyte generation during a critical temporal window after NG2 cell division. Nature Neuroscience. (2014) 17(11), 1518-1527. PMID: 25262495, Faculty of 1000 recommended, #co-corresponding author

Schain AJ, Hill RA, and Grutzendler J. Label-free in vivo imaging of myelinated axons in health and disease with spectral confocal reflectance microscopy. Nature Medicine. (2014) 20(4), 443-449. PMID: 24681598, Faculty of 1000 recommended, highlighted by Nature Methods and Yale News

Townsend, A. K., E. G. Cooch, T. S. Sillett, N. L. Rodenhouse, R. T. Holmes, and M. S. Webster. 2016. Contrasting effects of warm springs and global climate cycles on population dynamics of a migratory songbird. Global Change Biology 22: 544-555 (doi: 10.1111/gcb.13053).

Marra, P. P., C. E. Studds, S. Wilson, T. S. Sillett, T. W. Sherry, and R. T. Holmes. 2015. Non-breeding season habitat quality mediates the strength of density-dependence for a migratory bird. 2015. Proceedings of the Royal Society London B 282, doi.org/10.1098/rspb.2015.0624.

Sherry, T.W., S. Wilson, S. Hunter, and R.T. Holmes. 2015. Impacts of nest predators and weather on reproductive success and population limitation in a long-distance migratory songbird. Journal of Avian Biology 46: 559- 569.

Lany, N.K., M. P. Ayres, E.E. Stange, T.S. Sillett, N.L. Rodenhouse, and R.T. Holmes. 2015. Breeding timed to maximize reproductive success for a migratory songbird: the importance of phenological asynchrony. Oikos, doi: 10.1111/oik.02412.

Townsend, A. K., T. S. Sillett, N. K. Lany, S. A. Kaiser, N. L. Rodenhouse, M.S. Webster, and R. T. Holmes. 2013.  Warm springs, early lay dates, and double-brooding in a North American migratory songbird, the Black-throated Blue Warbler.  PLoS One 8(4): e59467. doi:10.1371/ 

Swatantran, A., R. Dubayah, S. Goetz, M. Hofton, M. G. Betts, M. Sun, M. Simard, and R. T. Holmes.  2012. Mapping migratory bird prevalence using     remote sensing data fusion.  PLoS One 7(1): doi:10.1371/journal.pone.0028922

Holmes, R. T.  2011. Birds in forest ecosystems: long-term research on populations and community processes in the Hubbard Brook Experimental Forest.  Forest Ecology and Management 262: 20-32

Goetz, S. J., S. Steinberg, M. Betts, R. T. Holmes, P. Doran, R. Dubayah, and M. Hofton. 2010. Lidar remote sensing variables predict breeding habitat of a Neotropical migrant bird. Ecology 91: 1569-1576

Faaborg, J., R.T. Holmes, et al. 2010. Recent advances in understanding migration systems of New World landbirds. Ecological Monographs, 80:3-48

Rodenhouse N.L., S.N. Matthews, K.P. McFarland, J.D. Lambert, L.R. Iverson, A. Prasad, T.S. Sillett, and R.T. Holmes. 2008. Potential effects of climate change on birds of the Northeast. Mitig. Adapt. Strat. Global Change 13: 517-540

Betts, M.G., N.L. Rodenhouse, T.S. Sillett, P.J. Doran, and R.T. Holmes. 2008. Dynamic occiupancy models reveal within-breeding season movement up a habitat quality gradient by a migrant songbird. Ecography 31: 592-600

Holmes, R.T. 2007. Understanding population change in migratory songbirds: long-term and experimental studies of Neotropical migrants in breeding and wintering areas. Ibis 149 (S2): 2-13

Johnson, M.D., T.W. Sherry, R.T. Holmes, and P.P. Marra. 2006. Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology 20: 1433-1444

Nagy, L.R., and R.T. Holmes. 2005. Food limits annual fecundity of a migratory songbird: an experimental study. Ecology 86: 675-681

Sillett, T.S., N.L. Rodenhouse, and R.T. Holmes. 2004. Experimentally reducing neighbor density affects reproduction and behavior of a migratory songbird. Ecology 85: 2467-2477

Rodenhouse, N.L., T.S. Sillett, P.J. Doran, and R.T. Holmes. 2003. Multiple density-dependent mechanisms regulate a migratory bird population during the breeding season. Proc. Royal Society London B 270:2105-2110

Jones, J., P. J. Doran and R.T. Holmes. 2003. Climate and food synchronize regional forest bird abundances. Ecology 84: 3024-3032

Rubenstein, D.R., C. P. Chamberlain, R.T. Holmes, et al. 2002. Linking breeding and wintering ranges of a Neotropical migrant songbird using stable isotopes. Science 295:591-593

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Prunet, N., Yang, W., Das, P., Meyerowit, E.M., Jack, T.P. (2017) SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7166-7171. doi: 10.1073/pnas.1705977114. Epub 2017 Jun 20.

Brancaccio-Taras, L., Pape-Lindstrom, P. A., Peteroy-Kelly, M., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Cahill, M., Frey, G., Jack, T., Kelrick, M., Marley, K. E., Miller, K. G., Osgood, M. P., Romano, S. L. Uzman, J. A., Zhao. J. (2016).  The PULSE Vision & Change Rubrics: A valid and equitable tool to measure life sciences department transformation at all institution types. CBE Life Sci Educ. 2016 Winter; 15(4): ar60. doi: 10.1187/cbe.15-12-0260 PMCID: PMC5132357 PMID: 27856548.

 Prunet, N., Jack, T. P., and Meyerowitz, E. M. (2016) Live confocal imaging of Arabidopsis flower buds. Dev Biol. 2016 Mar 15. pii: S0012-1606(16)30066-5. doi: 10.1016/j.ydbio.2016.03.018. [Epub ahead of print]

Prunet, N., Morel, P., Champelovier, P., Thierry, A.-M., Negrutiu, I., Jack, T., and Trehin, C.  (2015).  SQUINT promotes stem cell homeostasis and floral meristem termination in Arabidopsis through APETALA2 and CLAVATA signaling. J. Ex. Bot. 66, 6905-6916.

Pape-Lindstrom, P. A., Jack, T., Miller, K. G., Aguirre, K. M., Awong-Taylor, J., Balser, T. C., Awong-Taylor, J., Brancaccio-Taras, L., Marley, K. E., Osgood, M. P., Peteroy-Kelly, M.,  Romano, S. L. (2015). PULSE pilot certification results.  J. Microbiol. Ed. 16, 127-129.

Wellmer, F., Bowman, J. L., Davies, B., Ferrandiz, C., Fletcher J. C., Franks, R. G., Graciet, E., Gregis, V., Ito, T., Jack, T. P., Jiao, Y., Kater, M. M., Ma, H., Meyerowitz, E. M., Prunet, N., and Riechmann, J. L. (2014).  Flower Development: Open Questions and Future Directions.  In Methods in Molecular Biology - Flower Development:  Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 103-124.

Prunet, N. and Jack, T. (2014). Flower development in Arabidopsis – there's more to it than learning your ABCs.  In Methods in Molecular Biology - Flower Development:  Methods and Protocols (F. Wellmer and J.-L. Riechmann editors), 3-33.

Gauthier, A., and Jack, T.  (2014).  The Professor and the instructional designer: a course design journey.  Transformations: Liberal Arts in the Digital Age.

Aguirre, K. M., Balser, T. C., Jack, T., Marley, K. E., Miller, K. G., Osgood, M. P., Pape-Lindstrom, P. A., and Romano, S. L.  (2013).  PULSE Vision & Change Rubrics.  CBE-Life Sciences Education 12, 579-581. (corresponding author).

Jacob, N., Lee-Brown, M., Allen, T., Gusky, S., and Jack, T.  (2013).  Catalysing educational transformation:  The PULSE Project.  GARNish Newsletter 20, 18-21.

Nag, A., and Jack, T. (2010).  Sculpting the flower: the role of miRNAs in flower development.  Current Topics Dev. Biol. 91, 349-378.

Nag, A., King. S., and Jack, T. (2009).  miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis.  Proc. Natl. Acad. Sci. USA 106, 22534-22539.

Swaminathan, K., Peterson, K., and Jack, T. (2008).  The plant B3 superfamily. Trends in Plant Science 13, 647-655. 

Piwarzyk, E., Yang, Y., and Jack, T. (2007).  The conserved C-terminal motifs of the Arabidopsis proteins AP3 and PI are dispensable for function. Plant Phys. 145, 1495-1505. (This work received a Faculty of 1000 citation)

Nag, A., Yang, Y., and Jack, T.  (2007).  DORNRÖSCHEN-LIKE, an AP2 gene, is necessary for stamen emergence in Arabidopsis. Plant Mol. Biol. 65, 219-232. (Work featured in cover photograph.)

Yang, Y and T Jack, Defining Subdomains of the K Domain Important for Protein-Protein Interactions of Plant MADS Proteins, Plant Molecular Biology , 55:1 (2004) 45-59.

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Yang, Y, H Xiang, and T Jack, pistillata-5 , an Arabidopsis B class mutant with strong defects in petal but not in stamen development, Plant Journal , (2003) 33 177-188.

Yang, Y, L Fanning, and T Jack, The K domain mediates heterodimerization of the Arabidopsis floral organ identity proteins, APETALA3 and PISTILLATA,  Plant Journal , 33 (2003) 47-60.

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Chapman TW, Kamen Y, Piedra ET, and Hill RA. Oligodendrocyte maturation alters the cell death mechanisms that cause demyelination. The Journal of Neuroscience (2024) doi: 10.1523/JNEUROSCI.1794-23.2024 PMID: 38395617 

Kamen Y#, Evans KA, Sitnikov S, Spitzer SO, de Faria O Jr, Yucel M, Káradóttir RT#. Clemastine and metformin extend the window of NMDA receptor surface expression in ageing oligodendrocyte precursor cells. Scientific Reports (2024) doi: 10.1038/s41598-024-53615-x. PMID: 38374232  #co-corresponding author 

Pivoňková H*, Sitnikov S*, Kamen Y*, Vanhaesebrouck A, Matthey M, Spitzer SO, Ng YT, Tao C, de Faria O Jr, Varga BV, Káradóttir RT. Heterogeneity in oligodendrocyte precursor cell proliferation is dynamic and driven by passive bioelectrical properties. Cell Reports (2024) doi: 10.1016/j.celrep.2024.114873 PMID: 39423130   *co-first author

Kamen Y, Pivonkova H, Evans KA, Káradóttir RT. A Matter of State: Diversity in Oligodendrocyte Lineage Cells. The Neuroscientist (2022) doi: 10.1177/1073858420987208. PMID: 33567971 

Kamen Y#, Káradóttir RT#. Combining whole-cell patch clamp and dye loading in acute brain slices with bulk RNA sequencing in embryonic to aged mice. STAR Protocols (2021) doi: 10.1016/j.xpro.2021.100439. PMID: 33899020   #co-corresponding author 

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Zhu Y, Tan W., W.-L. Lee (2018). An in vitro Microscopy-based Assay for Microtubule-binding and Microtubule-crosslinking by Budding Yeast Microtubule-associated Protein. Bio-protocol 8(23): e3110. doi: 10.21769/BioProtoc.3110.

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Leinonen, P.H., M.J. Salmela, K. Greenham, C.R. McClung, & J.H. Willis. 2020. Populations are differentiated in biological rhythms without explicit elevational clines in the plant Mimulus laciniatus. J. Biol. Rhythms 35: 452-464. doi: 10.1177/0748730420936408.

Guadagno, C.R., D. Millar, R. Lai, D.S. Mackay, J.R. Pleban, C.R. McClung, C. Weinig D.R. Wang & B.E. Ewers. 2020. Use of transcriptomic data to inform biophysical models via Bayesian networks.  Ecol. Modelling 429: 109086. doi: 10.1016/j.ecolmodel.2020.109086.

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Park, H.J., D. Baek, J.-Y. Cha, X. Liao, S.-H. Kang, C.R. McClung, S.Y. Lee, D.-J. Yun & W.-Y. Kim.. 2019. HOS15 interacts with the histone deacetylase HDA9 and the Evening Complex to epigenetically regulate the floral activator GIGANTEA.  Plant Cell 31:37-51. doi: 10.1105/tpc.18.00721.

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Kim, H., H.J. Kim, Q.T. Vu, S. Jung, C.R. McClung, S. Hong & H.G. Nam. 2018. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. USA 115: 8448-8453. doi 10.1073/pnas.1722407115.

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Greenham, K., C.R. Guadagno, M.A. Gehan, T.C. Mockler, C. Weinig, B.E. Ewers & C.R. McClung. 2017. Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa. eLIFE 6: e29655

Lu, H., C.R. McClung, & C. Zhang. 2017. Tick Tock: Circadian regulation of plant innate immunity. Annu. Rev. Phytopathol. 55:  287–311. doi: 10.1146/annurev-phyto-080516-035451.Lu, H., C.R. McClung, & C. Zhang. 2017. Tick Tock: Circadian regulation of plant innate immunity. Annu. Rev. Phytopathol. 55:  287–311. doi: 10.1146/annurev-phyto-080516-035451.

Salmela, M.J., K. Greenham, P. Lou, C.R. McClung, B.E. Ewers & C. Weinig. 2016. Variation in circadian rhythms is maintained among and within populations in Boechera stricta in Wyoming. Plant Cell Environ. 39: 1293-1303.

Yarkhunova,, Y., C.E. Edwards, B.E. Ewers, R.L. Baker, T.L. Aston, C.R. McClung, P. Lou & C. Weinig. 2016. Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa. New. Phytol. 210:133-144.

Kim, J.A., H.-e. Jung, J.K. Hong, V. Hermand, C.R. McClung, Y.-H. Lee, J.Y. Kim, S.I. Lee, M.-J. Jeong, J. Kim, D.J. Yun & W.-Y. Kim. 2016. Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance. Plant Cell Rep. 35:1943-1954. doi: 10.1007/s00299-016-2008-9.

Greenham, K., P. Lou, H. Farid, S.E. Remsen & C.R. McClung. 2015.  TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation.  Plant Methods 11:33.

Gehan, M.A., K. Greenham, T.C. Mockler & C.R. McClung. 2015. Transcriptional networks – crops, clocks, and abiotic stress. Curr. Op. Plant Biol. 24: 39-46.

Greenham, K. & C.R. McClung. 2015. Integrating circadian dynamics with physiological processes in plants. Nature Rev. Genet. 16: 598-610.

Xie, Q., P. Lou, V. Hermand, R. Aman, H.J. Park, D.-J Yun, W.Y. Kim, M.J. Salmela, B.E. Ewers, C. Weinig, S.L. Khan*, D.L.P. Schaible*, & C.R. McClung. 2015. Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa. Proc. Natl. Acad. Sci. USA 112:3829-3834.

Bond MC, Vidakovic L, Singh PK, Drescher K, Nadell CD†. (2021). Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells. eLife 10:e65355

Kasetty D, Mould DL, Hogan DA, Nadell CD†. (2021). Both Pseudomonas aeruginosa and Candida albicans accumulate greater biomass in dual-species biofilm under flow. mSphere 6(3): e00416-21

Kowalski CH, Morelli KA, Stajich JE, Nadell CD, Cramer RA (2021). A heterogeneously expressed gene family modulates the biofilm architecture and hypoxic growth of Aspergillus fumigatus. mBio 12(1): e03579-20

Koeppen K, Nymon A, Barnaby R, Bashor L, Li Z, Hampton TH, Liefield AE, Kolling FW, LaCroix IS, Gerber S, Hogan DA, Kasetty K, Nadell CD, Stanton BA. (2021). Let-7b-5c in vesicles secreted by human airway cells reduces biofilm formation and increases antibiotic susceptibility of P. aeruginosa. Proceedings of the National Academy of Sciences USA 118(28): e2105370118

Kowalski CH, Morelli KA, Schultz D, Nadell CD, Cramer RA. (2020) Fungal biofilm architecture produces hypoxic microenvironments that drive antifungal resistance. Proceedings of the National Academy of Sciences USA.  Sep 8;117(36):22473-22483

Simmons EL, Bond MC, Koskella B, Drescher K, Bucci V, Nadell CD. (2020) Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria. mSystems. Jun 23;5(3):e00877

Díaz-Pascual F, Hartmann R, Lempp M, Vidakovic L, Song B, Jeckel H, Thormann KM, Yildiz FH, Dunkel J, Link H, Nadell CD, Drescher K. (2019) Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function. Nature Microbiology. Dec;4(12):2136-2145

Kitts G, Giglio KM, Zamorano-Sánchez D, Park JH, Townsley L, Cooley RB, Wucher BR, Klose KE, Nadell CD, Yildiz FH, Sondermann H. (2019) A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae. mBio. Dec 3;10(6):e02822-19

Wucher BW, Bartlett TM, Persat A, Nadell CD (2019). Vibrio cholerae filamentation promotes chitin surface attachment at the expense of competition in biofilms. Proceedings of the National Academy of Sciences USA 116(28): 14216-14221

Rossy T, Nadell CD, Persat A. (2018). Cellular advection-diffusion drives emergence of bacterial surface colonization patterns and heterogeneity. Nature Communications 10(1): 2471

Martinez-Garcia R, Nadell CD, Hartmann R, Drescher K, Bonachela J† (2018). Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms. PLoS Computational Biology 14(4): e1006094

Vidakovic L, Singh PK, Hartmann R, Nadell CD, Drescher K. (2018). Dynamic biofilm architecture confers individual and collective mechanisms of viral protection. Nature Microbiology 3: 26-31

Simmons M, Drescher K, Nadell CD, Bucci V.  (2017). Phage mobility is a core determinant of phage–bacteria coexistence in biofilms. ISME Journal 12: 531-543

Singh PK, Hartmann R, Bartolomej S, Nadell CD, Drescher K. (2017). Vibrio cholerae combines individual and collective sensing to trigger biofilm dispersal. Current Biology 27: 1-8

Yan J, Nadell CD, Stone HA, Wingreen NS, Bassler BL (2017). Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion. Nature Communications 8: 327

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Peterson, K. J., and Eernisse, D. J. (2016) The phylogeny, evolutionary developmental biology, and paleobiology of the Deuterostomia: 25 years of new techniques, new discoveries, and new ideas. Organisms, Diversity & Evolution 16, 401-418.

Tarver, J. E., dos Reis, M., Mirarab, S., Moran, R. J., Parker, S., O'Reilly, J. E., King, B., L., O'Connell, M. J., Asher, R. J., Warnow, T., Peterson, K. J., Donoghue, P. C. J., and Pisani, D. (2016) The interrelationships of placental mammals and the limits of phylogenetic inference. Genome Biology and Evolution 8, 330-344.

Fromm, B., Billipp, T., Peck, L. E., Johansen, M., Tarver, J. E., King, B., L., Newcomb, J. M., Sempere, L. F., Flatmark, K., Hovig, E., and Peterson, K. J. (2015) A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome. Annual Review of Genetics 49, 213-242.

Robinson, J. M., Sperling, E. A., Bergum, B., Adamski, M., Nichols, S. A., Adamska, M., and Peterson, K. J. (2013). The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. Journal of Experimental Zoology (Molecular and Developmental Evolution) 320B 84-93.

Tarver, J. E., Donoghue, P. C. J., and Peterson, K. J. (2012). Do miRNAs have a deep evolutionary history? Bioessays 34, 857-866.

Erwin, D. H. Laflamme, M., Tweedt, S. M., Pisani, D., and Peterson, K. J. (2011). The Cambrian conundrum: Early divergence and later ecological success in the early history of animals. Science, 334, 1091-1097.

Campbell, L. I., Rota-Stabellli, O., Marchioro, T., Longhorn, S. J., Edgecombe, G. D., Telford, M. J., Philippe, H., Rebecchi, L., Peterson, K. J., and Pisani, D. (2011). MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest the velvet worms are the sister group of Arthropoda. Proceedings of the National Academy of Sciences, USA 108, 15920-15924.

Anderson, B. M., Pisani, D., Miller, A. I., and Peterson, K. J. (2011). The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record. Geology 2011, 971-974.

Campo-Paysaa, F., Sémon, M., Cameron, R. A., Peterson, K. J., and Schubert, M. (2011). miRNA complements in deuterostomes: origin and evolution of miRNAs. Evolution & Development 13, 15-27.

Philippe, H., Brinkmann, H., Copley, R. R., Moroz, L. L., Nakano, H., Poustka, A. J., Wallberg, A., Peterson, K. J., and Telford, M. J. (2011). Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470, 255-258.

Sperling, E. A., Peterson, K. J., and LaFlamme, M. (2010). Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran ocean Geobiology 9, 24-33.

Hydra Genome Consortium (2010). The dynamic genome of Hydra. Nature 464, 592-596.

Rota-Stabellli, O., Campbell, L., Brinkmann, H., Edgecombe, G. D., Longhorn, S. J., Peterson, K. J., Pisani, D., Philippe, H., and Telford, M. (2010). A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proceedings of the Royal Society of London B Biological Sciences 278, 298-306.

Heimberg, A. M., Cowper-Sal lari, R., Sémon, M., Donoghue, P. C. J., and Peterson, K. J. (2010). microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. Proceedings of the National Academy of Sciences, USA 107, 19379-19383.

Sperling, E. A., Robinson, J. M., Pisani, D., and Peterson, K. J. (2010). Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Mry missing Precambrian fossil record of siliceous-sponge spicules. Geobiology 8, 24-36.

Sperling, E. A., Vinther, J., Moy, V. N., Wheeler, B. M., Sémon, M., Briggs, D. E. G., and Peterson, K. J. (2009). MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings of the Royal Society of London B Biological Sciences 276, 4315-4322.

Sperling, E. A., Peterson, K. J., and Pisani, D. (2009). Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution 26, 2261-2274.

Peterson, K. J., Dietrich, M. R., and McPeek, M. A. (2009). MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 31, 736-747.

Wheeler, B. M., Heimberg, A. M., Moy, V. N., Sperling, E. A., Holstein, T. W., Heber, S., and Peterson, K. J. (2009). The deep evolution of metazoan microRNAs. Evolution & Development 11, 50-68.

Yamburenko, M.V., Worthen, J.M., Zeenat, A., Azhar, B.J., Swain, S., Couitt, A.R., Shakeel, S.N., Kieber, J.J., Schaller, G.E. Functional Analysis of the Rice Type-B Response Regulator RR22. (2020) Frontiers of Plant Science. 0;11:577676.

Burr, C.A., Sun, J., Yamburenko, M.V. Willoughby, A., Hodgens, C., Boeshore, S.L., Elmore, A., Atkinson, J., Nimchuk, Z.L., Bishopp, A.,Schaller, G.E., Kieber, J.J. (2020) The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice. Development. Oct 27;147(20):dev191734

Zubo, Y.O., Schaller, G.E. (2020) Role of the Cytokinin-Activated Type-B Response Regulators in Hormone Crosstalk.  Plants (Basel). Jan 30;9(2):166.

Worthen, J.M., Yamburenko, M.V., Lim, J., Nimchuk, Z.L., Kieber, J.J., Schaller, G.E. (2019) Type-B response regulators of rice play key roles in growth, development and cytokinin signaling. Development. Jul 10;146(13):dev174870.

Binder, B.M., Kim, H.J., Mathews, D.E., Hutchison, C.E., Kieber, J.J., Schaller, G.E. (2018) A role for two-component signaling elements in the Arabidopsis growth recovery response to ethylene. Plant Direct. May 9;2(5):e00058

Potter, K.C., Wang, J., Schaller, G.E., Kieber, J.J. (2018) Cytokinin modulates context-dependent chromatin accessibility through the type-B response regulators. Nature Plants. Dec;4(12):1102-1111.

Zubo, Y.O., Blakley, I.C., Franco-Zorrilla, J.M., Yamburenko, M.V., Solano, R., Kieber, J.J., Loraine, A.E., and Schaller, G.E. (2018) Coordination of chloroplast development through the action of the GNC and GLK transcription factor families. Plant Physiol. 178:130-147. 

Kieber, J.J., and Schaller, G.E. (2018) Cytokinin signaling in plant development. Development. 145:dev149344  

Zubo, Y.O., Blakley, I.C., Yamburenko, M.V., Worthen, J.M., Street, I.H., Franco-Zorrilla, J.M., Zhang, W., Hill, K., Raines, T., Solano, R., Kieber, J.J., Loraine, A.E., and Schaller, G.E. (2017) Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis. Proc. Natl. Acad. Sci. USA 114:E5995-E6004.

Yamburenko, M.V., Kieber, J.J., Schaller, G.E. (2017) Dynamic patterns of expression for genes regulating cytokinin metabolism and signaling during rice inflorescence development. PLoS ONE. 12: e0176060.

Binder, B.M. and Schaller, G.E., co-editors. (2017) Ethylene Signaling: Methods and Protocols Methods Mol. Biol. Vol. 1573. Humana Press, Springer Science+Business Media LLC, New York.

Street, I.H., Mathews, D.E., Yamburenko, M.V., Sorooshzadeh, A., John, R.T., Swarup, R., Bennett, M.J., Kieber, J.J., and Schaller, G.E. (2016) Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root. Development 143:3982-3993.

Street, I.H., Aman, S., Zubo, Y., Ramzan, A., Wang, X., Shakeel, S.N., Kieber, J.J., and Schaller, G.E. (2015) Ethylene inhibits cell proliferation of the Arabidopsis root meristem. Plant Physiol. 169:338-350.

Rai, M.I., Wang, X., Thibault, D.M., Kim, H.J., Bombyk, M.M., Binder, B.M., Shakeel, S., and Schaller, G.E. (2015) The ARGOS gene family functions in a negative feedback loop to desensitize plants to ethylene. BMC Plant Biol. 15:157.

Shakeel, S.N., Gao, Z., Amir, M., Chen Y.-F., Rai, M.I., Haq, N.U., and Schaller, G.E. (2015) Ethylene regulates levels of the ethylene receptor/CTR1 signaling complex in Arabidopsis thaliana. J. Biol. Chem. 290:12415-12424

Schaller, G.E., Bishopp, A., and Kieber, J.J. (2015) The yin-yang of hormones: Cytokinin and auxin interactions in plant development. Plant Cell. 27: 44-63

Kieber, J.J. and Schaller, G.E. (2014) Cytokinins. Arabidopsis Book. 12:e0168 doi: 10.1199/tab.0168

Kim, H.J., Chiang, Y.-H., Kieber, J.J., and Schaller, G.E. (2013) SCFKMD controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc. Natl. Acad. Sci. USA. 110:10028-10033.

Hill, K., Mathews, D.E., Kim, H.J., Street, I.H., Wildes, S.L., Chiang, Y.H., Mason, M.G., Alonso, J.M., Ecker, J.R., Kieber, J.J., and Schaller, G.E. (2013) Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiol. 162:212-224.

Shakeel, S.N., Wang, X., Binder, B.M., and Schaller, G.E. (2013) Mechanisms of signal transduction by ethylene: Overlapping and non-overlapping signaling roles in a receptor family. AoB PLANTS. doi: 10.1093/aobpla/plt010

Chiang, Y.-H., Zubo, Y.O., Tapken, W., Kim, H.J., Lavanway, A.M., Howard, L., Pilon, M., Kieber, J.J., Schaller, G.E. (2012) Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis. Plant Physiol. 160: 332-348.

Hall, B.P., Shakeel, S.N., Amir, M., Haq, N.U., Qu, X. and Schaller, G.E. (2012) Histidine-kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol. 159:682-95

Tsai, Y.-C., Weir, N.R., Hill, K., Zhang, W., Kim, H.J., Shiu, S.-H., Schaller, G. E., Kieber, J.J. (2012) Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiol. 158:1666-84

Schaller, G.E., Shiu, S.H., and Armitage, J.P. (2011) Two-component systems and their co-option for eukaryotic signal transduction. Current Biology. 21:R320-R330

Mason M.G., Jha D., Salt D.E., Tester M., Hill K., Kieber J.J., Schaller G.E. (2010) Type-B response regulators ARR1 and ARR12 regulate expression of AtHKT1;1 and accumulation of sodium in Arabidopsis shoots. Plant J. 64:753-763

Chen, Y.-F., Gao, Z., Kerris III, R.J., Wang, W., Binder, B.M., Schaller, G.E. (2010) Ethylene receptors function as components of high-molecular-mass protein complexes in Arabidopsis. PLoS ONE, 5:e8640. doi:10.1371/journal.pone.0008640.

Kieber, J.J., and Schaller, G.E. (2010) The perception of cytokinin: A story 50 years in the making. Plant Physiology.154: 487-492.

Argyros, R.D., Mathews, D.E., Chiang, Y.-H., Palmer, C.M., Thibault, D.M., Etheridge, N., Argyros, D.A., Mason, M.G., Kieber, J.J., and Schaller, G.E. (2008) Type-B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20:2102-2116

Gao, Z., Wen, C.-K., Binder, B.M.,, Chen, Y.-F., Chang, J., Chiang, Y.-H., Kerris III, R.J., Chang, C., Schaller, G.E. (2008) Heteromeric interactions among ethylene receptors mediate signaling in Arabidopsis. J. Biol. Chem. 283:23081-23810

Chen, Y.-F., Shakeel, S.N., Bowers, J., Zhao-X.-C., Etheridge, N., and Schaller, G.E. (2007) Ligand-induced degradation of the ethylene receptor ETR2 through a proteasome-dependent pathway in Arabidopsis. J. Biol. Chem. 282: 24752 – 24758

First Person – Robert Bloodgood and Roger Sloboda. (2019). Journal of Cell Science 132, jcs237461. doi:10.1242/jcs.23746

Mizuno, Katsutoshi and Sloboda, Roger D. (2017).  Protein arginine methyltransferases interact with intraflagellar transport particles and change location during flagellar growth and resorption. Molecular Biology of the Cell, 28(9):1208-1222. doi: 10.1091/mbc.E16-11-0774. PMID: 28298486

Sloboda, Roger D. (2016).  Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in: Cytoskeleton; Methods and Protocols, 3rd ed., pp. 119-137.  doi 10.1007/978-1-4939-3124-8_6

Sloboda, Roger D. (2015).  Isolation and Analysis of Microtubules and Associated Proteins, In: Subcellular Fractionation: A Laboratory Manual, edited by Paul R. Pryor, Cold Spring Harbor Press, New York, pp: 115-140.  doi: 10.1101/pdb.top074526

Kull, F. Jon and Roger D. Sloboda (2014).  A Slow Dance for Microtubule Acetylation.  Cell, 157:1255-1256.  doi: 10.1016/j.cell.2014.05.021

Werner-Petersen, Rita and Sloboda, Roger D.  (2013).  Methylation of Structural Components of the Axoneme Occurs During Flagellar Disassembly,  Biochemistry, 52:8501-09.  doi 10.1021/bi4011623

Sloboda, Roger D.  (2009). Flagella and Cilia: The Long and the Short of It.  Current Biology, 19:R1084-1087.  doi 10.1016/j.cell.2014.05.021

Sloboda, Roger D.  (2009).  Post-Translational Protein Modifications in Cilia and Flagella.  Methods in Cell Biology, 94:347-363.  doi:10.1016/S0091-679X(08)94018-8

Sloboda, Roger D.  (2009). Purification and Localization of Intraflagellar Transport Particles and Polypeptides, in Methods in Molecular Biology: Cytoskeleton Methods and Protocols, ed. by Ray Gavin, Humana Press, 586:207-225.  doi: 10.1007/978-1-4939-3124-8_6

Sloboda, Roger D. and Louisa Howard (2009). Protein Methylation in Full Length Chlamydomonas Flagella.  Cell Motility and the Cytoskeleton, 66:650-660.  doi: 10.1002/cm.20387

Schneider, Mark J., Megan Ulland, and Roger D. Sloboda (2008). A Protein Methylation Pathway in Chlamydomonas Flagella Is Active During Flagellar Resorption, Molecular Biology of the Cell, 19:4319-4327. doi: 10.1091/mbc.E08-05-0470

Dymek, E.E., Lin, J., Fu, G., Porter, M.E., Nicastro, D. and E.F. Smith (2019)  PACRG and FAP20 form the inner junction of axonemal doublet microtubules and regulate ciliary motility. Molecular Biology of the Cell, 2019 Jul 15;30(15):1805-1816. doi: 10.1091/mbc.E19-01-0063. Epub 2019 May 22. PMID: 31116684

Fu, G., Zhao, L., Dymek, E.E., Hou, Y., Song, K, Phan, N., Shang, Z., Smith, E.F., Witman, G., Nicastro, D. Structural organization of the C1a-e-c supercomplex within the ciliary central apparatus. (submitted)

Loreng, T.D. and E.F. Smith. (2017) The central apparatus of cilia and eukaryotic flagella. In Cilia and Flagella. Wallace Marshall ed. Cold Spring Harbor Laboratory Press. 9(2)

Mizuno, K., E.E. Dymek and E.F. Smith. (2016) Microtubule binding protein PACRG plays a role in regulating specific ciliary dyneins during microtubule sliding. Cytoskeleton.Dec;73(12):703-711. doi: 10.1002/cm.21340.

Vasudevan, K.K., Song, K.,  Alford, L.M., Sale, W.S.,  Dymek, E.E., Smith, E.F., Hennessey, T.,  Joachimiak, E.,  Urbanska, P., Wloga, D., Dentler, W., Nicastro, D. and J. Gaertig. (2015) FAP206 is a microtubule-docking adapter for ciliary radial spoke 2 and dynein c.  Molecular Biology of the Cell. Feb 15;26(4):696-710.

Wren, K.N., Craft, J.M., Tritschler, D., Schauer, A., Patel, D.K., Smith, E.F., Porter, M.E., Kner, P., and K.F. Lechtreck. (2013) A differential cargo-loading model of ciliary length regulation by IFT.  Current Biology. Dec 16;23(24):2463-71.

DiPetrillo, C. and E.F. Smith. (2013) Methods for analysis of calcium / calmodulin signaling in cilia and flagella.  Methods in Enzymology, 524: 37-57.

Dymek, E.E., Heuser, T.,  Lin, J.,  Smith,  E.F. and D. Nicastro. (2012) The CSC connects three major axonemal complexes involved in dynein regulation. Molecular Biology of the Cell 23(16):3143-55

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38 .

Brown J.M., DiPetrillo, C. , Smith, E.F. and G.B. Witman. (2012) A FAP46 mutant provides new insights into the function and assembly of the C1d complex of the ciliary central apparatus.  Journal of Cell Science 125(16):3904-13

Dymek, E.E. and E.F. Smith. (2012) PF19 encodes the p60 catalytic subunit of katanin and is required for assembly of the flagellar central apparatus in Chlamydomonas. J. Cell Science 125(Pt 14):3357-66

DiPetrillo, C. and E.F. Smith. (2011) The Pcdp1 complex coordinates the activity of dynein isoforms to produce wild-type ciliary motility. Molecular Biology of the Cell 22(23):4527-38

Dymek, E.E.,  Heuser, T., Nicastro, D. and E.F. Smith. (2011) The CSC is required for complete radial spoke assembly and wild-type ciliary motility. Molecular Biology of the Cell 22(14):2520-31

Smith, E.F. and R. Rohatgi. (2011) Cilia 2010: The surprise organelle of the decade. Science Signaling. 4:55 mr1. 

Straschil, U., Talman, A., Ferguson, D., Bunting, K., Xu, Z., Bailes, L., Coates, J., Holder, T., Smith, E.F. and R. Tewari. (2010) The Armadillo repeat protein PF16 is essential for flagellar structure and function in Plasmodium male gametes. PLoS ONE . Vol. 5:10 e12901

DiPetrillo, C., and E.F. Smith. (2010) Pcdp1 is a central apparatus protein that binds Ca 2+ -calmodulin and regulates ciliary motility. Journal of Cell Biology 189(3):601-612

Barre, L, Richardson, C, Hirshman, MF, Brozinick, Fiering, S, Kemp, BE, Goodyear, LJ and Witters, LA (2007) A genetic model for the chronic activation of skeletal muscle AMP-activated protein kinase leads to glycogen accumulation, Am J Physiol Endo Metab, 292, E802-811

Gleason, CE, Lu, D, Witters, LA, Newgard, CB and Birnbaum, MJ, (2007) The role of AMPK and mTOR in nutrient sensing in pancreatic β-cells, J. Biol. Chem., 282, 10341-103451

Roecki, KSC, Hirshman, MF, Brandauer, J, Fujii, N.. Witters, LA and Goodyear, LJ (2007), Skeletal Muscle Adaptation to Exercise Training AMP-Activated Protein Kinase Mediates Muscle Fiber Type Shift, Diabetes, 56, 2062-2069

Anderson, KA, Riber, T, Lin, F, Noeldner, P, Green, M, Murhlbauer, MJ, Witters LA, Kemp, BE and Means, AM (2008) A role for CaMKK2 in hypothalamic regulation of energy balance, Cell Metabolism, 7, 377-388

Folmes, KD, Witters LA, Allard, MF, Young ME and Dyck, JRB (2007) The AMPK gamma-1 R70Q mutant regulated multiple metabolic and growth pathways in the cardiac myocyte, Am J Physiol Heart Circ Physiol., 293(6):H3456-64

Vadasz, I, Dada, LA, Briva, A, C hen, J, Welch, LC, Diaz, I, Lecuona, E, Chandel, NS, Witters, LA, Seeger, W and Sznajder, JI (2008) AMP-activated protein kinase mediates the high CO2-induced alveolar epithelial dysfunction by down-regulating the Na,K-ATPase, J Clin Invest, 118(2):752-62

Ho, RC, Fujii, N, Witters, La, Hirshman, MF and Goodyear, LJ (2007) Dissociation of AMP-activated protein kinase and p38 mitogen-activated protein kinase signaling in skeletal muscle, Biochem Biophys Res Comm, 362(2):354-9

Iseli, TJ, Oakhill, JS, Bailey, MF, Wee, S, Walter, M, van Denderen, BJ, Castelli, LA, Katsis, F, Witters, LA, Stapeton, D, Macauley, SL, Mickhell, BJ and Kemp, BE (2008) AMPK subunit interactions: β1 Thr-263 and Tyr-267 are required for β1:γ1 association, J Biol Chem, 283(8):4799-807

Witters, LA (2008) A Diligent Effort, Dartmouth Medicine, 32, 52-65

Witters, LA, Luciano, M, Williams, C and Yang, J (2008), Diabetes Detective, Dartmouth Medicine, 33, 36-41

Gusarova, GA, Dada, LA, Kelly, A, Brodie, C, Witters, LA and Sznajder, JI (2009) α-1-AMP-activated protein kinase (AMPK) regulates hypoxia-induced NaK-ATPase encocytosis via direct phosphorylation of PKCζ, Mol Cell Biol, 29, 3455-3464

Joly, E, Roduit, R, Peyot, M-L, Habinowski, SA, Ruderman, N, Witters, LA and Prentki, M (2009) Glucose represses peroxisome proliferator-activated receptor α gene expression via AMP-activated protein kinase but not via p38 mitogen-activated protein kinase in the pancreatic β-cell, J Diabetes, 1. 263-272

Baumrin, E, Corbett, W, Kulkarni, A and Witters LA (2009) The most unspeakable terror, Dartmouth Medicine, 34, 44-57

Farrell AA, Nesbø CL, Zhaxybayeva O. (2025): "Bacterial Growth Temperature as a Horizontally Acquired Polygenic Trait". Genome Biol Evol. 17: evae277.

Kogay R, Zhaxybayeva O. (2024) Co-evolution of gene transfer agents and their alphaproteobacterial hosts. J Bacteriol., 206: e0039823.

Farrell AA, Nesbø CL and Zhaxybayeva O. (2023) "Early Divergence and Gene Exchange Highways in the Evolutionary History of Mesoaciditogales." Genome Biol Evol., 15: evad156.

Blum LN, Colman DR, Eloe-Fadrosh EA, Kellom M, Boyd ES, Zhaxybayeva O, Leavitt WD. (2023): "Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH". Environ Microbiol., 25:1644-1658.

Roman Kogay, Sonja Koppenhöfer, J Thomas Beatty, Jens H Kuhn, Andrew S Lang, Olga Zhaxybayeva (2022): "Formal recognition and classification of gene transfer agents as viriforms." Virus Evolution, 8: veac100.

Roman Kogay and Olga Zhaxybayeva (2022): "Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents." mSystems, 7: e0089222.

Zhengshuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke, and Olga Zhaxybayeva (2021): "Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus", ISME Journal, 15: 2843-2864

Emma S. Esterman, Yuri I. Wolf, Roman Kogay, Eugene V. Koonin, and Olga Zhaxybayeva (2021): "Evolution of DNA packaging in gene transfer agents", Virus Evolution, 7: veab015.

Roman Kogay, Yuri I Wolf, Eugene V Koonin, and Olga Zhaxybayeva (2020): "Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents", mBio, 11:e01206-20.

Chase WR, Zhaxybayeva O, Rocha J, Cosgrove DJ, Shapiro LR. (2020) "Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution." New Phytol., 226:921-938.

Complete list of publications is available at https://labofoz.host.dartmouth.edu/2.0/publications-2/